Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0026442 Lotus japonicus HOM05D001069 ORTHO05D007586 6.0e-62 240.7 128 100.0
VMungo0720G0790 Vigna mungo HOM05D001069 ORTHO05D007586 4.2e-55 218.0 125 90.4
Glyma.20G225500 Glycine max HOM05D001069 ORTHO05D007586 5.5e-55 217.6 125 89.6
Glyma.10G162900 Glycine max HOM05D001069 ORTHO05D007586 3.5e-54 214.9 125 88.0
Lalb_Chr21g0311011 Lupinus albus HOM05D001069 ORTHO05D007586 1.0e-53 213.4 125 88.8
Haze_04370 Corylus avellana HOM05D001069 ORTHO05D007586 1.3e-53 213.0 126 87.3
Phvul.007G187900 Phaseolus vulgaris HOM05D001069 ORTHO05D007586 1.3e-53 213.0 125 87.2
Manes.09G151800 Manihot esculenta HOM05D001069 ORTHO05D007586 1.8e-53 212.6 125 88.0
Manes.08G135700 Manihot esculenta HOM05D001069 ORTHO05D007586 3.0e-53 211.8 125 88.0
CSS0013670 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 5.1e-53 211.1 125 87.2
CSS0018717 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 5.1e-53 211.1 125 87.2
Psat6g145040 Pisum sativum HOM05D001069 ORTHO05D007586 5.1e-53 211.1 125 88.0
ECA233G1896 Erigeron canadensis HOM05D000316 ORTHO05D000374 6.7e-53 210.7 128 84.4
Medtr1g080770 Medicago truncatula HOM05D001069 ORTHO05D007586 6.7e-53 210.7 125 87.2
Thecc.05G281200 Theobroma cacao HOM05D001069 ORTHO05D007586 6.7e-53 210.7 128 85.9
Actinidia32808 Actinidia chinensis HOM05D001069 ORTHO05D007586 1.5e-52 209.5 125 87.2
Prupe.6G344500 Prunus persica HOM05D001069 ORTHO05D007586 1.9e-52 209.1 125 87.2
TPR.G12907 Trifolium pratense HOM05D001069 ORTHO05D007586 1.9e-52 209.1 125 86.4
QL03p027238 Quercus lobata HOM05D001069 ORTHO05D007586 2.5e-52 208.8 124 87.9
arahy.Tifrunner.gnm1.ann1.SY74BB Arachis hypogaea HOM05D001069 ORTHO05D007586 3.3e-52 208.4 125 85.6
CANSAT54G2612 Cannabis sativa HOM05D001069 ORTHO05D007586 3.3e-52 208.4 127 85.0
Cfa006409 Carpinus fangiana HOM05D001069 ORTHO05D001549 3.3e-52 208.4 124 87.1
Duzib128G0644 Durio zibethinus HOM05D001069 ORTHO05D007586 3.3e-52 208.4 128 84.4
GSVIVG01036275001 Vitis vinifera HOM05D001069 ORTHO05D007586 3.3e-52 208.4 125 86.4
Lalb_Chr06g0168091 Lupinus albus HOM05D001069 ORTHO05D007586 5.7e-52 207.6 125 86.4
CiPaw.08G122900 Carya illinoinensis HOM05D001069 ORTHO05D007586 7.4e-52 207.2 125 85.6
PGR004G2600 Punica granatum HOM05D001069 ORTHO05D007586 7.4e-52 207.2 125 86.4
Nn1g02583 Nelumbo nucifera HOM05D001069 ORTHO05D007586 9.6e-52 206.8 125 84.8
FAN09G0270 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.3e-51 206.5 125 84.8
Ca_10042_v3 Cicer arietinum L. HOM05D001069 ORTHO05D007586 1.6e-51 206.1 124 86.3
MD12G1242900 Malus domestica HOM05D001069 ORTHO05D007586 1.6e-51 206.1 125 85.6
TAR636G2667 Trochodendron aralioides HOM05D001069 ORTHO05D001549 1.6e-51 206.1 125 84.0
Duzib177G1121 Durio zibethinus HOM05D001069 ORTHO05D007586 2.1e-51 205.7 128 84.4
FvH4_6g02700 Fragaria vesca HOM05D001069 ORTHO05D007586 2.1e-51 205.7 125 85.6
FAN14G5212 Fragaria x ananassa HOM05D001069 ORTHO05D007586 2.1e-51 205.7 125 85.6
MD04G1225700 Malus domestica HOM05D001069 ORTHO05D007586 2.1e-51 205.7 125 85.6
arahy.Tifrunner.gnm1.ann1.AYUH3A Arachis hypogaea HOM05D001069 ORTHO05D007586 2.8e-51 205.3 125 84.8
MSTRG.20449 Avicennia marina HOM05D001069 ORTHO05D007586 2.8e-51 205.3 129 84.5
Gohir.A13G104300 Gossypium hirsutum HOM05D001069 ORTHO05D007586 2.8e-51 205.3 128 85.2
RcHm_v2.0_Chr3g0450701 Rosa chinensis HOM05D001069 ORTHO05D007586 2.8e-51 205.3 125 84.8
Dinv20292 Davidia involucrata HOM05D001069 ORTHO05D007586 3.7e-51 204.9 125 85.6
Migut.B01094 Erythranthe guttata HOM05D001069 ORTHO05D007586 4.8e-51 204.5 129 83.7
Eucgr.H04324 Eucalyptus grandis HOM05D001069 ORTHO05D007586 6.2e-51 204.1 125 84.0
HanXRQChr16g0514711 Helianthus annuus HOM05D001069 ORTHO05D007586 6.2e-51 204.1 128 82.8
COL.COLO4_15368 Corchorus olitorius HOM05D001069 ORTHO05D007586 8.2e-51 203.8 126 84.1
FAN02G3324 Fragaria x ananassa HOM05D001069 ORTHO05D007586 8.2e-51 203.8 125 84.8
FAN05G3732 Fragaria x ananassa HOM05D001069 ORTHO05D007586 8.2e-51 203.8 125 84.0
FAN14G1639 Fragaria x ananassa HOM05D001069 ORTHO05D007586 8.2e-51 203.8 125 84.8
FAN14G4385 Fragaria x ananassa HOM05D001069 ORTHO05D007586 8.2e-51 203.8 125 84.8
Oeu002656.1 Olea europaea HOM05D001069 ORTHO05D007586 8.2e-51 203.8 129 83.7
Potri.013G042100 Populus trichocarpa HOM05D001069 ORTHO05D007586 1.8e-50 202.6 125 83.2
Potri.005G054500 Populus trichocarpa HOM05D001069 ORTHO05D007586 2.4e-50 202.2 125 84.0
Rhsim07G0074100 Rhododendron simsii HOM05D001069 ORTHO05D007586 2.4e-50 202.2 125 82.4
CiPaw.07G068400 Carya illinoinensis HOM05D001069 ORTHO05D007586 3.1e-50 201.8 125 82.4
Sc09g0003960 Simmondsia chinensis HOM05D001069 ORTHO05D007586 3.1e-50 201.8 125 84.0
Gohir.D13G107700 Gossypium hirsutum HOM05D001069 ORTHO05D007586 4.1e-50 201.4 128 82.8
Nitab4.5_0001592g0010 Nicotiana tabacum HOM05D001069 ORTHO05D007586 4.1e-50 201.4 129 83.7
PSO210G4375 Papaver somniferum HOM05D001069 ORTHO05D007586 5.3e-50 201.1 128 81.2
Peaxi162Scf00282g00417 Petunia axillaris HOM05D001069 ORTHO05D007586 6.9e-50 200.7 129 82.2
Sabra05G0047400 Salix brachista HOM05D001069 ORTHO05D001549 6.9e-50 200.7 125 84.0
SGA_v2.0_scaffold5G02970 Striga asiatica HOM05D001069 ORTHO05D007586 6.9e-50 200.7 129 81.4
DCAR_006651 Daucus carota HOM05D001069 ORTHO05D007586 9.0e-50 200.3 128 81.2
Nitab4.5_0008996g0040 Nicotiana tabacum HOM05D001069 ORTHO05D007586 9.0e-50 200.3 129 82.9
Atru.chr2.835 Acer truncatum HOM05D001069 ORTHO05D007586 1.2e-49 199.9 127 80.3
Gorai.013G120600 Gossypium raimondii HOM05D001069 ORTHO05D007586 1.5e-49 199.5 123 84.6
Aqoxy2G00949 Aquilegia oxysepala HOM05D001069 ORTHO05D007586 2.0e-49 199.1 128 78.1
Nn3g19512 Nelumbo nucifera HOM05D001069 ORTHO05D007586 2.0e-49 199.1 125 81.6
PSO832G3124 Papaver somniferum HOM05D001069 ORTHO05D007586 2.0e-49 199.1 128 80.5
CAN.G134.94 Capsicum annuum HOM05D001069 ORTHO05D007586 2.6e-49 198.7 122 86.1
Cc02_g30720 Coffea canephora HOM05D001069 ORTHO05D007586 1.4e-47 193.0 129 79.1
unitig_52.g17389 Utricularia gibba HOM05D001069 ORTHO05D007586 1.4e-47 193.0 122 82.8
THA.LOC104823751 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 1.9e-47 192.6 125 78.4
THA.LOC104805822 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 5.5e-47 191.0 125 78.4
TWI12G0612 Tripterygium wilfordii HOM05D001069 ORTHO05D007586 5.5e-47 191.0 125 79.2
MELO3C004390.2 Cucumis melo HOM05D001069 ORTHO05D007586 7.1e-47 190.7 125 76.0
Os03g0628900 Oryza sativa ssp. japonica HOM05D001069 ORTHO05D007586 2.1e-46 189.1 125 75.2
ClCG02G016730 Citrullus lanatus HOM05D001069 ORTHO05D007586 2.7e-46 188.7 124 75.8
Ciclev10029576m.g Citrus clementina HOM05D001069 ORTHO05D007586 2.7e-46 188.7 129 77.5
AUR62004967 Chenopodium quinoa HOM05D001069 ORTHO05D007586 4.6e-46 188.0 125 78.4
Sed0025346 Sechium edule HOM05D001069 ORTHO05D007586 4.6e-46 188.0 125 76.0
AUR62000994 Chenopodium quinoa HOM05D001069 ORTHO05D007586 6.1e-46 187.6 125 77.6
Hund22103 Selenicereus undatus HOM05D001069 ORTHO05D007586 7.9e-46 187.2 124 76.6
CARHR008700 Cardamine hirsuta HOM05D001069 ORTHO05D007586 1.8e-45 186.0 131 76.3
CDE06G2591 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 3.0e-45 185.3 125 75.2
BcaB07g34137 Brassica carinata HOM05D001069 ORTHO05D007586 8.7e-45 183.7 130 76.2
Aa31sc20G40 Aethionema arabicum HOM05D001069 ORTHO05D007586 1.1e-44 183.3 128 74.2
EL10Ac4g09163 Beta vulgaris HOM05D001069 ORTHO05D007586 2.5e-44 182.2 125 75.2
C05p06850 Brassica napus HOM05D001069 ORTHO05D007586 2.5e-44 182.2 128 74.2
A06p05680 Brassica napus HOM05D001069 ORTHO05D007586 4.3e-44 181.4 130 74.6
Sp1g07420 Schrenkiella parvula HOM05D001069 ORTHO05D007586 9.7e-44 180.3 131 74.0
AL1G19210 Arabidopsis lyrata HOM05D001069 ORTHO05D007586 1.3e-43 179.9 130 73.8
AT1G08780 Arabidopsis thaliana HOM05D001069 ORTHO05D007586 1.3e-43 179.9 130 73.8
CsaV3_2G004010 Cucumis sativus L. HOM05D001069 ORTHO05D007586 4.8e-43 177.9 125 72.0
Carub.0001s0812 Capsella rubella HOM05D001069 ORTHO05D007586 6.3e-43 177.6 118 78.8
Thhalv10009095m.g Eutrema salsugineum HOM05D001069 ORTHO05D007586 6.3e-43 177.6 131 72.5
A08p34980 Brassica napus HOM05D001069 ORTHO05D007586 1.8e-42 176.0 122 73.0
BraA08t35409Z Brassica rapa HOM05D001069 ORTHO05D007586 2.4e-42 175.6 122 73.0
Sed0020567 Sechium edule HOM05D001069 ORTHO05D007586 2.4e-42 175.6 125 71.2
BolC5t29444H Brassica oleracea HOM05D001069 ORTHO05D007586 3.1e-42 175.3 118 77.1
BcaNung06267 Brassica carinata HOM05D001069 ORTHO05D007586 4.1e-42 174.9 131 68.7
BcaC07g38446 Brassica carinata HOM05D001069 ORTHO05D007586 6.9e-42 174.1 132 68.9
C08p12160 Brassica napus HOM05D001069 ORTHO05D007586 6.9e-42 174.1 132 68.9
BraA06t23778Z Brassica rapa HOM05D001069 ORTHO05D007586 6.9e-42 174.1 118 76.3
PGSC0003DMG401019457 Solanum tuberosum HOM05D001069 ORTHO05D007586 1.5e-41 172.9 129 74.4
ATR0665G433 Amborella trichopoda HOM05D001069 ORTHO05D007586 2.6e-41 172.2 125 71.2
HanXRQChr17g0559331 Helianthus annuus HOM05D001069 ORTHO05D007586 3.8e-40 168.3 125 72.8
Solyc01g097300.4 Solanum lycopersicum HOM05D001069 ORTHO05D007586 1.1e-39 166.8 129 72.1
Sopen01g040970 Solanum pennellii HOM05D001069 ORTHO05D007586 1.1e-39 166.8 129 72.1
MBI04_g44868_MAGBIO Magnolia biondii HOM05D001069 ORTHO05D007586 9.4e-39 163.7 125 68.8
CDE07G0518 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 1.2e-38 163.3 125 68.8
HPP92_026288 Vanilla planifolia HOM05D001069 ORTHO05D007586 1.6e-38 162.9 125 68.0
Zm00001eb051110 Zea mays HOM05D001069 ORTHO05D007586 6.1e-38 161.0 125 67.2
BolC8t48854H Brassica oleracea HOM05D001069 ORTHO05D007586 7.9e-38 160.6 147 59.9
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 2.3e-37 159.1 148 62.8
Zm00001eb218870 Zea mays HOM05D001069 ORTHO05D007586 1.5e-36 156.4 125 65.6
Pp3c16_6640 Physcomitrium patens HOM05D001069 ORTHO05D007586 3.8e-32 141.7 125 60.8
arahy.Tifrunner.gnm1.ann1.VQ2WN5 Arachis hypogaea HOM05D001069 ORTHO05D007586 5.0e-32 141.4 89 78.7
CBR_g8595 Chara braunii HOM05D001069 ORTHO05D007586 3.2e-31 138.7 125 57.6
AagrBONN_evm.TU.Sc2ySwM_369.398 Anthoceros agrestis HOM05D001069 ORTHO05D007586 2.7e-30 135.6 125 56.8
Sabra13G0038700 Salix brachista HOM05D001069 ORTHO05D007586 2.7e-30 135.6 88 81.8
Lsat_1_v5_gn_5_68360 Lactuca sativa HOM05D001069 ORTHO05D007586 6.1e-30 134.4 87 80.5
Mapoly0094s0008 Marchantia polymorpha HOM05D001069 ORTHO05D007586 1.1e-28 130.2 125 55.2
vmacro13808 Vaccinium macrocarpon HOM05D001069 ORTHO05D007586 1.5e-28 129.8 87 79.3
SMO356G0364 Selaginella moellendorffii HOM05D001069 ORTHO05D007586 2.2e-27 125.9 133 54.9
SHI18420 Sapria himalayana HOM05D001069 ORTHO05D007586 1.3e-24 116.7 87 69.0
MCO16G237 Micromonas commoda HOM05D001069 ORTHO05D007586 1.6e-22 109.8 120 47.5
PRCOL_00003582 Prasinoderma coloniale HOM05D001069 ORTHO05D007586 9.1e-18 94.0 121 43.0
Cre16.g671750 Chlamydomonas reinhardtii HOM05D001069 ORTHO05D007586 4.5e-17 91.7 121 45.5
TAR365G0807 Trochodendron aralioides HOM05D001069 ORTHO05D007586 1.0e-16 90.5 61 75.4
arahy.Tifrunner.gnm1.ann1.X5I3PL Arachis hypogaea HOM05D001069 ORTHO05D007586 4.0e-13 78.6 46 87.0
arahy.Tifrunner.gnm1.ann1.JAH3YR Arachis hypogaea HOM05D001069 ORTHO05D007586 5.7e-12 74.7 39 87.2
Sabra13G0038600 Salix brachista HOM05D000002 ORTHO05D000001 4.8e-11 71.6 38 89.5
arahy.Tifrunner.gnm1.ann1.VDJK8S Arachis hypogaea HOM05D001069 ORTHO05D007586 1.1e-10 70.5 50 76.0
TAR633G2811 Trochodendron aralioides HOM05D001069 ORTHO05D007586 1.3e-08 63.5 31 90.3
SHI18422 Sapria himalayana HOM05D001069 ORTHO05D007586 1.1e-07 60.5 41 70.7
Cfa022668 Carpinus fangiana HOM05D013358 ORTHO05D124219 6.1e-06 54.7 119 32.8


User provided reference genes

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