Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0026303 Lotus japonicus HOM05D004499 ORTHO05D004928 3.4e-165 585.1 330 100.0
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 4.5e-61 239.2 330 50.0
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 8.0e-58 228.4 344 48.0
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 1.4e-54 217.6 332 48.8
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 1.4e-54 217.6 324 49.7
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 1.8e-54 217.2 342 49.7
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.2e-53 214.5 344 44.2
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 2.0e-53 213.8 331 49.8
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 2.7e-53 213.4 347 47.3
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 7.7e-53 211.8 333 45.6
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 1.7e-52 210.7 341 48.1
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 3.8e-52 209.5 346 45.7
FvH4_6g15510 Fragaria vesca HOM05D004499 ORTHO05D004928 6.5e-52 208.8 338 43.5
FAN09G3365 Fragaria x ananassa HOM05D004499 ORTHO05D004928 6.5e-52 208.8 338 43.5
FAN14G2800 Fragaria x ananassa HOM05D004499 ORTHO05D004928 6.5e-52 208.8 338 43.5
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.1e-51 208.0 341 43.7
Lalb_Chr01g0018981 Lupinus albus HOM05D004499 ORTHO05D004928 1.1e-51 208.0 343 43.4
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 2.1e-50 203.8 348 46.8
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 3.6e-50 203.0 353 44.2
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 4.0e-49 199.5 334 45.2
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.5e-48 197.6 339 48.4
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 1.5e-48 197.6 339 47.5
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 2.2e-47 193.7 341 43.7
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 2.2e-47 193.7 347 43.2
Medtr7g100830 Medicago truncatula HOM05D004499 ORTHO05D004928 8.3e-47 191.8 333 43.5
Psat6g070200 Pisum sativum HOM05D004499 ORTHO05D004928 1.8e-46 190.7 324 47.5
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 2.4e-46 190.3 340 43.8
Glyma.03G178700 Glycine max HOM05D004499 ORTHO05D004928 2.4e-46 190.3 321 42.4
Lj1g0000961 Lotus japonicus HOM05D004499 ORTHO05D004928 3.1e-46 189.9 334 42.5
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 9.1e-46 188.3 332 44.9
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 9.1e-46 188.3 341 41.6
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 1.2e-45 188.0 334 43.4
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.6e-45 187.6 329 43.5
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 1.6e-45 187.6 341 42.8
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 2.7e-45 186.8 340 42.4
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 1.3e-44 184.5 329 42.2
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 3.8e-44 183.0 331 42.6
Sed0022446 Sechium edule HOM05D004499 ORTHO05D004928 6.6e-44 182.2 342 41.5
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 2.5e-43 180.3 337 42.7
Psat3g044200 Pisum sativum HOM05D004499 ORTHO05D004928 7.2e-43 178.7 337 45.4
MELO3C009326.2 Cucumis melo HOM05D004499 ORTHO05D004928 1.6e-42 177.6 349 40.7
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.6e-42 177.6 329 41.6
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 1.6e-42 177.6 340 43.2
CsaV3_3G035670 Cucumis sativus L. HOM05D004499 ORTHO05D004928 2.8e-42 176.8 356 41.6
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 2.8e-42 176.8 330 40.9
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 3.6e-42 176.4 321 44.9
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 3.6e-42 176.4 335 40.6
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 3.0e-41 173.3 318 41.5
Lalb_Chr20g0112851 Lupinus albus HOM05D004499 ORTHO05D004928 4.0e-41 172.9 324 42.6
Ca_08832_v3 Cicer arietinum L. HOM05D004499 ORTHO05D004928 5.2e-41 172.6 310 44.2
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 8.9e-41 171.8 338 42.9
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 8.9e-41 171.8 338 43.8
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 2.6e-40 170.2 328 39.3
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 3.4e-40 169.9 329 41.9
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 9.8e-40 168.3 336 41.7
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 2.2e-39 167.2 355 38.9
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 7.0e-38 162.2 338 40.5
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 2.0e-37 160.6 330 39.7
CSS0015121 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 5.9e-37 159.1 341 42.2
Nn2g13028 Nelumbo nucifera HOM05D004499 ORTHO05D004928 1.3e-36 157.9 358 38.8
Sabra16G0093100 Salix brachista HOM05D004499 ORTHO05D004928 2.3e-36 157.1 348 40.2
VMungo1383G2757 Vigna mungo HOM05D004499 ORTHO05D004928 2.9e-36 156.8 326 38.3
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 5.0e-36 156.0 333 38.1
Phvul.001G175400 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 3.3e-35 153.3 322 39.4
Manes.08G004127 Manihot esculenta HOM05D004499 ORTHO05D004928 3.6e-34 149.8 220 45.0
Manes.08G004131 Manihot esculenta HOM05D004499 ORTHO05D004928 3.6e-34 149.8 220 45.0
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 8.0e-34 148.7 337 39.8
Rhsim04G0149000 Rhododendron simsii HOM05D004499 ORTHO05D004928 1.0e-33 148.3 352 37.5
DCAR_014968 Daucus carota HOM05D004499 ORTHO05D004928 4.0e-33 146.4 313 39.3
Manes.08G004109 Manihot esculenta HOM05D004499 ORTHO05D004928 4.0e-33 146.4 218 44.0
Manes.08G004117 Manihot esculenta HOM05D004499 ORTHO05D004928 4.0e-33 146.4 218 44.0
Oeu029418.1 Olea europaea HOM05D004499 ORTHO05D004928 4.0e-33 146.4 334 35.9
Manes.08G004114 Manihot esculenta HOM05D004499 ORTHO05D004928 5.2e-33 146.0 220 44.5
Manes.08G004120 Manihot esculenta HOM05D004499 ORTHO05D004928 5.2e-33 146.0 220 44.5
Manes.08G004126 Manihot esculenta HOM05D004499 ORTHO05D004928 8.9e-33 145.2 220 44.5
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 1.3e-31 141.4 321 35.8
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 1.1e-30 138.3 349 36.4
Duzib106G0876 Durio zibethinus HOM05D004499 ORTHO05D004928 3.2e-30 136.7 332 37.3
Lsat_1_v5_gn_6_30120 Lactuca sativa HOM05D004499 ORTHO05D004928 3.2e-30 136.7 317 42.0
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 5.4e-30 136.0 375 33.6
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 1.6e-29 134.4 222 42.8
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 4.6e-29 132.9 216 43.1
Cc06_g03680 Coffea canephora HOM05D004499 ORTHO05D004928 7.8e-29 132.1 359 40.4
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 1.0e-28 131.7 342 35.1
THA.LOC104826978 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 5.0e-28 129.4 320 38.1
AUR62042302 Chenopodium quinoa HOM05D004499 ORTHO05D004928 8.6e-28 128.6 326 36.2
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 1.9e-27 127.5 337 36.5
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 9.5e-27 125.2 331 37.8
CARHR210240 Cardamine hirsuta HOM05D004499 ORTHO05D004928 3.6e-26 123.2 322 35.7
Gohir.D04G114901 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.8e-25 120.9 160 47.5
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 2.3e-25 120.6 331 36.0
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 3.1e-25 120.2 330 34.5
PGSC0003DMG400001742 Solanum tuberosum HOM05D004499 ORTHO05D004928 3.1e-25 120.2 330 39.7
Thhalv10014228m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 5.2e-25 119.4 253 36.4
SGA_v2.0_scaffold126G33909 Striga asiatica HOM05D004499 ORTHO05D004928 6.8e-25 119.0 311 37.6
unitig_26.g9218 Utricularia gibba HOM05D004499 ORTHO05D004928 1.2e-24 118.2 330 35.2
C02p00790 Brassica napus HOM05D004499 ORTHO05D004928 2.6e-24 117.1 239 36.0
BolC2t06077H Brassica oleracea HOM05D004499 ORTHO05D004928 2.6e-24 117.1 239 36.0
MSTRG.26719 Avicennia marina HOM05D004499 ORTHO05D004928 7.5e-24 115.5 334 33.2
BcaC03g13031 Brassica carinata HOM05D004499 ORTHO05D004928 1.3e-23 114.8 239 35.6
Dinv35728 Davidia involucrata HOM05D004499 ORTHO05D004928 1.3e-23 114.8 198 46.5
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 1.7e-23 114.4 393 32.1
Oeu060092.2 Olea europaea HOM05D000784 ORTHO05D004928 2.2e-23 114.0 323 32.8
Carub.0006s0191 Capsella rubella HOM05D004499 ORTHO05D004928 1.1e-22 111.7 323 33.7
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 1.9e-22 110.9 340 35.3
C04p10830 Brassica napus HOM05D004499 ORTHO05D004928 2.4e-22 110.5 330 35.5
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 2.4e-22 110.5 198 41.4
BcaC02g11837 Brassica carinata HOM05D004499 ORTHO05D004928 3.2e-22 110.2 330 35.5
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 4.1e-22 109.8 326 34.0
Aa31LG5G22320 Aethionema arabicum HOM05D004499 ORTHO05D004928 9.2e-22 108.6 326 33.1
BolC4t22678H Brassica oleracea HOM05D004499 ORTHO05D004928 9.2e-22 108.6 329 36.2
Migut.J00423 Erythranthe guttata HOM05D004499 ORTHO05D004928 9.2e-22 108.6 361 34.3
Manes.12G048251 Manihot esculenta HOM05D004499 ORTHO05D004928 9.2e-22 108.6 198 40.9
AT5G03110 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 1.2e-21 108.2 294 34.4
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 1.6e-21 107.8 76 75.0
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 3.5e-21 106.7 331 34.1
Sp6g39600 Schrenkiella parvula HOM05D004499 ORTHO05D004928 4.6e-21 106.3 288 35.4
A05p08740 Brassica napus HOM05D004499 ORTHO05D004928 6.0e-21 105.9 332 35.5
Lsat_1_v5_gn_1_54160 Lactuca sativa HOM05D004499 ORTHO05D004928 6.0e-21 105.9 316 32.6
Manes.05G197001 Manihot esculenta HOM05D004499 ORTHO05D004928 6.0e-21 105.9 198 40.4
BraA05t19842Z Brassica rapa HOM05D004499 ORTHO05D004928 7.8e-21 105.5 332 35.5
BcaB02g09303 Brassica carinata HOM05D004499 ORTHO05D004928 1.0e-20 105.1 337 33.2
BraA02t04744Z Brassica rapa HOM05D004499 ORTHO05D004928 1.0e-20 105.1 250 36.0
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 2.3e-20 104.0 338 31.4
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 3.0e-20 103.6 300 33.3
AUR62040029 Chenopodium quinoa HOM05D004499 ORTHO05D004928 5.1e-20 102.8 299 35.1
Manes.05G197300 Manihot esculenta HOM05D004499 ORTHO05D004928 1.5e-19 101.3 236 36.4
BcaB05g21851 Brassica carinata HOM05D004499 ORTHO05D004928 2.5e-19 100.5 328 32.3
PSO063G6372 Papaver somniferum HOM05D004499 ORTHO05D004928 2.5e-19 100.5 342 32.5
THA.LOC104816329 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 4.3e-19 99.8 332 33.7
Sed0011318 Sechium edule HOM05D004499 ORTHO05D004928 7.3e-19 99.0 216 40.3
Sc02g0001920 Simmondsia chinensis HOM05D004499 ORTHO05D004928 1.2e-18 98.2 272 34.6
SHI12538 Sapria himalayana HOM05D004499 ORTHO05D004928 8.1e-18 95.5 320 30.9
TPR.G36959 Trifolium pratense HOM05D004499 ORTHO05D004928 3.1e-17 93.6 274 35.0
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 8.9e-17 92.0 317 32.8
Ah.15g092180 Amaranthus hybridus HOM05D004499 ORTHO05D004928 1.2e-16 91.7 189 38.1
PSO339G1230 Papaver somniferum HOM05D004499 ORTHO05D004928 1.2e-16 91.7 330 33.6
ECA233G0353 Erigeron canadensis HOM05D004499 ORTHO05D004928 1.5e-16 91.3 308 37.0
HanXRQChr02g0051991 Helianthus annuus HOM05D004499 ORTHO05D004928 2.0e-16 90.9 81 61.7
Peaxi162Scf00005g04016 Petunia axillaris HOM05D004499 ORTHO05D004928 2.0e-16 90.9 70 61.4
Actinidia40043 Actinidia chinensis HOM05D004499 ORTHO05D004928 3.4e-16 90.1 319 31.7
RhsimUnG0115800 Rhododendron simsii HOM05D004499 ORTHO05D004928 1.7e-15 87.8 282 35.8
DCAR_009280 Daucus carota HOM05D004499 ORTHO05D004928 2.2e-15 87.4 322 30.7
AUR62044753 Chenopodium quinoa HOM05D004499 ORTHO05D004928 1.9e-14 84.3 290 32.1
MSTRG.10304 Avicennia marina HOM05D004499 ORTHO05D004928 5.4e-14 82.8 318 31.1
EL10Ac7g16510 Beta vulgaris HOM05D007360 ORTHO05D008235 1.6e-13 81.3 225 34.2
PSO384G2831 Papaver somniferum HOM05D004499 ORTHO05D004928 2.7e-13 80.5 333 29.4
SGA_v2.0_scaffold94G28675 Striga asiatica HOM05D004499 ORTHO05D004928 6.6e-12 75.9 309 28.2
PSO339G0805 Papaver somniferum HOM05D004499 ORTHO05D004928 1.9e-11 74.3 349 29.2
Oeu059988.1 Olea europaea HOM05D004499 ORTHO05D004928 1.1e-09 68.6 448 26.6
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 9.9e-08 62.0 279 28.0
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 9.9e-08 62.0 292 26.4
Nn4g25115 Nelumbo nucifera HOM05D004499 ORTHO05D004928 2.9e-07 60.5 141 33.3
Actinidia14388 Actinidia chinensis HOM05D004499 ORTHO05D004928 3.8e-07 60.1 52 61.5
HPP92_001043 Vanilla planifolia HOM05D004499 ORTHO05D004928 1.4e-06 58.2 221 29.0


User provided reference genes

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