Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0026283 Lotus japonicus HOM05D006753 ORTHO05D008521 1.4e-58 229.6 130 100.0
Glyma.10G288900 Glycine max HOM05D006753 ORTHO05D008521 6.0e-41 171.0 132 75.0
Lalb_Chr02g0144111 Lupinus albus HOM05D006753 ORTHO05D008521 3.0e-40 168.7 131 74.0
Medtr1g115255 Medicago truncatula HOM05D006753 ORTHO05D008521 1.1e-39 166.8 130 74.6
Ca_11278_v3 Cicer arietinum L. HOM05D006753 ORTHO05D008521 7.3e-39 164.1 130 76.2
Phvul.007G012200 Phaseolus vulgaris HOM05D006753 ORTHO05D008521 1.1e-37 160.2 116 77.6
VMungo0720G0065 Vigna mungo HOM05D006753 ORTHO05D008521 1.4e-37 159.8 132 75.0
MD13G1001300 Malus domestica HOM05D006753 ORTHO05D008521 1.9e-34 149.4 129 65.9
MELO3C011766.2 Cucumis melo HOM05D006753 ORTHO05D008521 2.1e-33 146.0 130 66.9
FAN17G2405 Fragaria x ananassa HOM05D006753 ORTHO05D008521 2.7e-33 145.6 121 66.9
Duzib132G0454 Durio zibethinus HOM05D006753 ORTHO05D008521 3.5e-33 145.2 114 71.9
Psat6g234480 Pisum sativum HOM05D006753 ORTHO05D008521 4.6e-33 144.8 131 68.7
QL01p000327 Quercus lobata HOM05D006753 ORTHO05D008521 4.6e-33 144.8 128 62.5
Duzib052G0750 Durio zibethinus HOM05D006753 ORTHO05D008521 7.8e-33 144.1 114 71.9
CANSAT78G0938 Cannabis sativa HOM05D006753 ORTHO05D008521 1.0e-32 143.7 115 67.8
FvH4_4g37311 Fragaria vesca HOM05D006753 ORTHO05D008521 1.0e-32 143.7 121 66.1
Manes.04G161100 Manihot esculenta HOM05D006753 ORTHO05D008521 1.0e-32 143.7 114 70.2
Nn3g18540 Nelumbo nucifera HOM05D006753 ORTHO05D008521 1.0e-32 143.7 129 65.1
PGR044G1510 Punica granatum HOM05D006753 ORTHO05D008521 1.3e-32 143.3 114 71.9
FAN07G1749 Fragaria x ananassa HOM05D006753 ORTHO05D008521 2.3e-32 142.5 121 66.1
Cfa018673 Carpinus fangiana HOM05D006753 ORTHO05D008521 5.1e-32 141.4 114 71.1
CsaV3_5G029140 Cucumis sativus L. HOM05D006753 ORTHO05D008521 5.1e-32 141.4 130 63.1
RcHm_v2.0_Chr4g0447151 Rosa chinensis HOM05D006753 ORTHO05D008521 6.6e-32 141.0 121 66.1
TWI53G0448 Tripterygium wilfordii HOM05D006753 ORTHO05D008521 6.6e-32 141.0 129 65.1
Thecc.02G152400 Theobroma cacao HOM05D006753 ORTHO05D008521 8.6e-32 140.6 126 66.7
GSVIVG01034354001 Vitis vinifera HOM05D006753 ORTHO05D008521 1.9e-31 139.4 114 67.5
Sed0019092 Sechium edule HOM05D006753 ORTHO05D008521 4.3e-31 138.3 130 62.3
Lj6g0020021 Lotus japonicus HOM05D006753 ORTHO05D008521 1.6e-30 136.3 133 63.9
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 2.1e-30 136.0 128 60.9
TAR629G2108 Trochodendron aralioides HOM05D006753 ORTHO05D008521 2.8e-30 135.6 114 64.0
TPR.G4104 Trifolium pratense HOM05D006753 ORTHO05D008521 6.2e-30 134.4 130 63.1
MSTRG.13663 Avicennia marina HOM05D006753 ORTHO05D008521 8.1e-30 134.0 126 61.9
CiPaw.16G000900 Carya illinoinensis HOM05D006753 ORTHO05D008521 1.4e-29 133.3 114 67.5
ClCG11G012760 Citrullus lanatus HOM05D006753 ORTHO05D008521 1.4e-29 133.3 130 61.5
Nitab4.5_0000075g0200 Nicotiana tabacum HOM05D006753 ORTHO05D008521 3.1e-29 132.1 132 57.6
MBI03_g11899_MAGBIO Magnolia biondii HOM05D006753 ORTHO05D008521 5.2e-29 131.3 112 65.2
Sabra08G0001000 Salix brachista HOM05D006753 ORTHO05D008521 5.2e-29 131.3 138 58.0
Os10g0491900 Oryza sativa ssp. japonica HOM05D006753 ORTHO05D008521 6.8e-29 131.0 114 65.8
Sc21g0003760 Simmondsia chinensis HOM05D006753 ORTHO05D008521 8.9e-29 130.6 114 65.8
Potri.008G003100 Populus trichocarpa HOM05D006753 ORTHO05D008521 1.2e-28 130.2 140 57.1
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 1.5e-28 129.8 114 64.0
Sopen03g009600 Solanum pennellii HOM05D006753 ORTHO05D008521 3.4e-28 128.6 113 61.1
Oeu006328.1 Olea europaea HOM05D006753 ORTHO05D008521 4.4e-28 128.3 113 62.8
Atru.chr11.42 Acer truncatum HOM05D006753 ORTHO05D008521 9.9e-28 127.1 129 59.7
COL.COLO4_33141 Corchorus olitorius HOM05D006753 ORTHO05D008521 9.9e-28 127.1 134 59.7
Migut.E00658 Erythranthe guttata HOM05D006753 ORTHO05D008521 3.7e-27 125.2 113 60.2
Migut.E00593 Erythranthe guttata HOM05D006753 ORTHO05D008521 4.9e-27 124.8 113 60.2
ATR0124G001 Amborella trichopoda HOM05D006753 ORTHO05D008521 8.3e-27 124.0 114 64.0
Nitab4.5_0008337g0010 Nicotiana tabacum HOM05D006753 ORTHO05D008521 1.1e-26 123.6 118 59.3
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 1.1e-26 123.6 113 61.9
EL10Ac9g23017 Beta vulgaris HOM05D006753 ORTHO05D008521 1.4e-26 123.2 114 62.3
Ciclev10017207m.g Citrus clementina HOM05D006753 ORTHO05D008521 1.4e-26 123.2 129 58.1
CAN.G815.2 Capsicum annuum HOM05D006753 ORTHO05D008521 2.4e-26 122.5 124 55.6
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 2.4e-26 122.5 113 61.9
Thhalv10002245m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 2.4e-26 122.5 114 59.6
Nitab4.5_0001307g0130 Nicotiana tabacum HOM05D006753 ORTHO05D008521 5.4e-26 121.3 118 58.5
PGSC0003DMG400018762 Solanum tuberosum HOM05D006753 ORTHO05D008521 5.4e-26 121.3 113 57.5
CDE05G2438 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 7.1e-26 120.9 114 58.8
Rhsim05G0152000 Rhododendron simsii HOM05D006753 ORTHO05D008521 1.2e-25 120.2 105 61.0
CDE05G0871 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 1.6e-25 119.8 113 58.4
SGA_v2.0_scaffold119G32769 Striga asiatica HOM05D006753 ORTHO05D008521 1.6e-25 119.8 123 57.7
Aqoxy3G04333 Aquilegia oxysepala HOM05D006753 ORTHO05D008521 2.1e-25 119.4 105 61.9
Sp6g34360 Schrenkiella parvula HOM05D006753 ORTHO05D008521 2.7e-25 119.0 131 58.8
ECA238G1815 Erigeron canadensis HOM05D006753 ORTHO05D008521 7.8e-25 117.5 114 60.5
Gohir.D12G135600 Gossypium hirsutum HOM05D006753 ORTHO05D008521 1.0e-24 117.1 114 59.6
Dinv25482 Davidia involucrata HOM05D006753 ORTHO05D008521 6.6e-24 114.4 124 54.0
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 1.1e-23 113.6 113 60.2
Gohir.A12G132000 Gossypium hirsutum HOM05D006753 ORTHO05D008521 1.5e-23 113.2 113 58.4
Gorai.008G146800 Gossypium raimondii HOM05D006753 ORTHO05D008521 2.5e-23 112.5 114 57.9
AUR62020818 Chenopodium quinoa HOM05D006753 ORTHO05D008521 3.3e-23 112.1 124 58.1
Lsat_1_v5_gn_2_64221 Lactuca sativa HOM05D006753 ORTHO05D008521 7.3e-23 110.9 134 54.5
SEGI_09956 Sequoiadendron giganteum HOM05D006753 ORTHO05D008521 1.2e-22 110.2 114 54.4
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 1.6e-22 109.8 111 56.8
Carub.0005s1869 Capsella rubella HOM05D006753 ORTHO05D008521 2.8e-22 109.0 126 53.2
PSO782G2482 Papaver somniferum HOM05D006753 ORTHO05D008521 3.6e-22 108.6 114 57.0
AT3G52350 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 4.7e-22 108.2 130 50.8
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 8.1e-22 107.5 111 55.9
PSO063G2822 Papaver somniferum HOM05D006753 ORTHO05D008521 1.1e-21 107.1 114 56.1
CARHR204450 Cardamine hirsuta HOM05D006753 ORTHO05D008521 4.0e-21 105.1 125 53.6
arahy.Tifrunner.gnm1.ann1.IW7U68 Arachis hypogaea HOM05D006753 ORTHO05D008521 5.2e-21 104.8 77 72.7
Prupe.1G351400 Prunus persica HOM05D006753 ORTHO05D008521 1.2e-20 103.6 129 52.7
arahy.Tifrunner.gnm1.ann1.RGG8YR Arachis hypogaea HOM05D006753 ORTHO05D008521 2.6e-20 102.4 77 71.4
BraA09t41301Z Brassica rapa HOM05D006753 ORTHO05D008521 2.6e-20 102.4 114 55.3
C09p68400 Brassica napus HOM05D006753 ORTHO05D008521 7.6e-20 100.9 131 51.9
Peaxi162Scf00003g02334 Petunia axillaris HOM05D006753 ORTHO05D008521 9.9e-20 100.5 104 55.8
A10p28190 Brassica napus HOM05D006753 ORTHO05D008521 2.9e-19 99.0 128 51.6
BraA10t44868Z Brassica rapa HOM05D006753 ORTHO05D008521 2.9e-19 99.0 128 51.6
BolC9t59587H Brassica oleracea HOM05D006753 ORTHO05D008521 4.9e-19 98.2 128 52.3
AL5G33000 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 6.4e-19 97.8 127 48.8
Pp3c15_7650 Physcomitrium patens HOM05D006753 ORTHO05D008521 8.4e-19 97.4 128 46.1
BcaC07g41240 Brassica carinata HOM05D006753 ORTHO05D008521 1.1e-18 97.1 114 53.5
C08p42460 Brassica napus HOM05D006753 ORTHO05D008521 1.1e-18 97.1 114 53.5
BolC8t51807H Brassica oleracea HOM05D006753 ORTHO05D008521 1.1e-18 97.1 114 53.5
A09p59170 Brassica napus HOM05D006753 ORTHO05D008521 1.4e-18 96.7 115 54.8
Eucgr.J00331 Eucalyptus grandis HOM05D006753 ORTHO05D008521 2.4e-18 95.9 177 40.1
AT5G08535 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 7.1e-18 94.4 112 50.9
BcaB08g34880 Brassica carinata HOM05D006753 ORTHO05D008521 7.1e-18 94.4 128 48.4
Cc11_g04160 Coffea canephora HOM05D006753 ORTHO05D008521 7.1e-18 94.4 60 81.7
AL6G19240 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 1.3e-16 90.1 110 50.9
Nitab4.5_0002355g0040 Nicotiana tabacum HOM05D006753 ORTHO05D008521 1.7e-16 89.7 132 47.0
Aa31LG3G18000 Aethionema arabicum HOM05D006753 ORTHO05D008521 1.1e-15 87.0 124 48.4
BcaB08g37248 Brassica carinata HOM05D006753 ORTHO05D008521 1.9e-15 86.3 116 54.3
Mapoly0001s0293 Marchantia polymorpha HOM05D006753 ORTHO05D008521 4.3e-15 85.1 113 48.7
SMO166G0033 Selaginella moellendorffii HOM05D006753 ORTHO05D008521 2.8e-14 82.4 107 49.5
Thhalv10015604m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 1.4e-13 80.1 87 58.6
HanXRQChr14g0446421 Helianthus annuus HOM05D006753 ORTHO05D008521 1.4e-13 80.1 60 70.0
SMO115G0110 Selaginella moellendorffii HOM05D000422 ORTHO05D002369 3.1e-13 79.0 105 48.6
SHI21226 Sapria himalayana HOM05D000843 ORTHO05D000698 1.2e-12 77.0 61 63.9
HPP92_003487 Vanilla planifolia HOM05D006753 ORTHO05D008521 1.2e-12 77.0 114 46.5
HPP92_026885 Vanilla planifolia HOM05D006753 ORTHO05D008521 1.2e-12 77.0 114 46.5
Carub.0006s0749 Capsella rubella HOM05D006753 ORTHO05D008521 1.3e-11 73.6 130 42.3
COL.COLO4_21663 Corchorus olitorius HOM05D006753 ORTHO05D008521 2.1e-06 56.2 86 48.8
Haze_17401 Corylus avellana HOM05D006753 ORTHO05D008521 2.1e-06 56.2 48 62.5
Cre02.g085200 Chlamydomonas reinhardtii HOM05D006753 ORTHO05D008521 3.6e-06 55.5 47 48.9
CSS0023466 Camellia sinensis var. sinensis HOM05D006753 ORTHO05D008521 6.2e-06 54.7 27 92.6
Cre02.g105287 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D008521 8.1e-06 54.3 53 45.3


User provided reference genes

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