Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0026151 Lotus japonicus HOM05D007188 ORTHO05D009102 1.4e-119 433.0 212 100.0
Phvul.007G099300 Phaseolus vulgaris HOM05D007188 ORTHO05D009102 4.0e-79 298.5 215 73.0
Glyma.20G183500 Glycine max HOM05D007188 ORTHO05D009102 2.6e-78 295.8 213 72.3
Medtr1g094160 Medicago truncatula HOM05D007188 ORTHO05D009102 9.9e-78 293.9 218 71.6
VMungo0720G2339 Vigna mungo HOM05D007188 ORTHO05D009102 1.4e-76 290.0 215 71.2
TPR.G10293 Trifolium pratense HOM05D007188 ORTHO05D009102 2.1e-72 276.2 216 69.4
Glyma.10G207400 Glycine max HOM05D007188 ORTHO05D009102 4.5e-70 268.5 209 67.0
Ca_10538_v3 Cicer arietinum L. HOM05D007188 ORTHO05D009102 6.5e-69 264.6 217 65.9
arahy.Tifrunner.gnm1.ann1.3RW2WH Arachis hypogaea HOM05D007188 ORTHO05D009102 3.9e-66 255.4 162 78.4
arahy.Tifrunner.gnm1.ann1.CRM3NE Arachis hypogaea HOM05D007188 ORTHO05D009102 3.9e-66 255.4 162 78.4
Psat6g181120 Pisum sativum HOM05D007188 ORTHO05D009102 1.5e-65 253.4 216 64.4
Manes.07G133140 Manihot esculenta HOM05D007188 ORTHO05D009102 4.3e-65 251.9 220 61.8
TAR623G0008 Trochodendron aralioides HOM05D007188 ORTHO05D009102 7.4e-65 251.1 196 65.3
Nn6g35269 Nelumbo nucifera HOM05D007188 ORTHO05D009102 1.6e-64 250.0 210 62.9
Lalb_Chr21g0313651 Lupinus albus HOM05D007188 ORTHO05D009102 6.2e-64 248.1 161 77.6
Sabra08G0023300 Salix brachista HOM05D007188 ORTHO05D009102 1.8e-63 246.5 212 62.7
GSVIVG01016213001 Vitis vinifera HOM05D007188 ORTHO05D009102 1.8e-63 246.5 192 65.1
QL08p054189 Quercus lobata HOM05D007188 ORTHO05D009102 1.2e-62 243.8 219 61.6
Potri.008G034900 Populus trichocarpa HOM05D007188 ORTHO05D009102 4.5e-62 241.9 217 62.2
Actinidia38870 Actinidia chinensis HOM05D007188 ORTHO05D009102 5.8e-62 241.5 173 68.2
CiPaw.02G171800 Carya illinoinensis HOM05D007188 ORTHO05D009102 5.8e-62 241.5 198 62.1
Gohir.A05G293300 Gossypium hirsutum HOM05D007188 ORTHO05D009102 6.5e-61 238.0 201 61.7
Eucgr.G02872 Eucalyptus grandis HOM05D007188 ORTHO05D009102 8.4e-61 237.7 159 71.7
TWI38G2147 Tripterygium wilfordii HOM05D007188 ORTHO05D009102 8.4e-61 237.7 170 70.6
Cfa001805 Carpinus fangiana HOM05D007188 ORTHO05D009102 1.1e-60 237.3 217 60.8
Gohir.D05G294000 Gossypium hirsutum HOM05D007188 ORTHO05D009102 1.9e-60 236.5 201 61.2
Duzib106G0123 Durio zibethinus HOM05D007188 ORTHO05D009102 9.3e-60 234.2 161 70.8
Gorai.009G310600 Gossypium raimondii HOM05D007188 ORTHO05D009102 9.3e-60 234.2 201 60.7
CsaV3_5G036040 Cucumis sativus L. HOM05D007188 ORTHO05D009102 1.6e-59 233.4 165 67.9
MELO3C012404.2 Cucumis melo HOM05D007188 ORTHO05D009102 4.6e-59 231.9 165 67.9
MD01G1102700 Malus domestica HOM05D007188 ORTHO05D009102 7.9e-59 231.1 193 62.7
RcHm_v2.0_Chr1g0362491 Rosa chinensis HOM05D007188 ORTHO05D009102 1.0e-58 230.7 211 58.8
Sed0000210 Sechium edule HOM05D007188 ORTHO05D009102 1.8e-58 229.9 165 66.7
CANSAT56G0643 Cannabis sativa HOM05D007188 ORTHO05D009102 5.1e-58 228.4 222 56.8
ClCG05G021230 Citrullus lanatus HOM05D007188 ORTHO05D009102 6.7e-58 228.0 191 61.3
Aqoxy1G01136 Aquilegia oxysepala HOM05D007188 ORTHO05D009102 1.5e-57 226.9 166 65.7
Ah.06g188920 Amaranthus hybridus HOM05D006516 ORTHO05D008083 1.9e-57 226.5 164 67.7
CSS0007320 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 4.3e-57 225.3 165 66.1
CSS0035829 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 5.7e-57 224.9 165 65.5
Cc02_g10880 Coffea canephora HOM05D007188 ORTHO05D009102 2.2e-56 223.0 162 68.5
SalBow4G2327 Salvia bowleyana HOM05D007188 ORTHO05D009102 2.2e-56 223.0 164 67.1
Lsat_1_v5_gn_8_20860 Lactuca sativa HOM05D007188 ORTHO05D009102 3.7e-56 222.2 180 60.6
RhsimUnG0185400 Rhododendron simsii HOM05D007188 ORTHO05D009102 4.8e-56 221.9 179 63.7
Rhsim09G0148000 Rhododendron simsii HOM05D007188 ORTHO05D009102 1.1e-55 220.7 179 63.7
CDE09G0470 Ceratophyllum demersum HOM05D007188 ORTHO05D009102 1.4e-55 220.3 169 61.5
FAN01G3175 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.4e-55 220.3 214 56.1
SGA_v2.0_scaffold62G21381 Striga asiatica HOM05D007188 ORTHO05D009102 2.4e-55 219.5 163 66.3
Atru.chr12.855 Acer truncatum HOM05D007188 ORTHO05D009102 6.9e-55 218.0 159 69.8
Aa31LG3G3010 Aethionema arabicum HOM05D007188 ORTHO05D009102 1.2e-54 217.2 170 62.9
FAN06G0953 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.2e-54 217.2 212 56.1
FAN06G2123 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.2e-54 217.2 212 56.1
HanXRQChr08g0218401 Helianthus annuus HOM05D007188 ORTHO05D009102 1.2e-54 217.2 205 56.1
PGSC0003DMG400023370 Solanum tuberosum HOM05D007188 ORTHO05D009102 1.2e-54 217.2 215 57.2
FAN03G0393 Fragaria x ananassa HOM05D007188 ORTHO05D009102 2.6e-54 216.1 214 55.1
FAN10G2630 Fragaria x ananassa HOM05D007188 ORTHO05D009102 2.6e-54 216.1 212 55.7
Sopen05g034000 Solanum pennellii HOM05D007188 ORTHO05D009102 2.6e-54 216.1 216 56.9
C03p44120 Brassica napus HOM05D007188 ORTHO05D009102 5.9e-54 214.9 217 53.0
Migut.F01952 Erythranthe guttata HOM05D007188 ORTHO05D009102 5.9e-54 214.9 197 55.8
BolC3t16687H Brassica oleracea HOM05D007188 ORTHO05D009102 7.7e-54 214.5 215 53.5
AUR62014280 Chenopodium quinoa HOM05D007188 ORTHO05D009102 1.3e-53 213.8 170 64.1
Sp3g08680 Schrenkiella parvula HOM05D007188 ORTHO05D009102 1.3e-53 213.8 171 61.4
ECA233G0714 Erigeron canadensis HOM05D007188 ORTHO05D009102 1.7e-53 213.4 172 61.6
BraA03t12819Z Brassica rapa HOM05D007188 ORTHO05D009102 2.2e-53 213.0 178 59.0
Thhalv10021497m.g Eutrema salsugineum HOM05D007188 ORTHO05D009102 5.0e-53 211.8 172 61.6
A03p36520 Brassica napus HOM05D007188 ORTHO05D009102 6.5e-53 211.5 178 58.4
Sc06g0002050 Simmondsia chinensis HOM05D007188 ORTHO05D009102 6.5e-53 211.5 152 67.8
Solyc05g055550.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 8.5e-53 211.1 171 63.2
AL3G21760 Arabidopsis lyrata HOM05D007188 ORTHO05D009102 1.1e-52 210.7 171 60.2
unitig_88.g27814 Utricularia gibba HOM05D007188 ORTHO05D009102 1.9e-52 209.9 195 55.4
AT3G10405 Arabidopsis thaliana HOM05D007188 ORTHO05D009102 2.5e-52 209.5 171 60.2
Solyc02g033060.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 7.2e-52 208.0 216 55.6
Zm00001eb022660 Zea mays HOM05D007188 ORTHO05D009102 7.2e-52 208.0 157 67.5
CAN.G694.38 Capsicum annuum HOM05D007188 ORTHO05D009102 9.4e-52 207.6 196 57.1
Os10g0545100 Oryza sativa ssp. japonica HOM05D007188 ORTHO05D009102 9.4e-52 207.6 156 66.0
PSO063G4012 Papaver somniferum HOM05D007188 ORTHO05D009102 1.2e-51 207.2 162 61.7
Peaxi162Scf00176g01519 Petunia axillaris HOM05D007188 ORTHO05D009102 1.2e-51 207.2 164 62.8
CARHR084890 Cardamine hirsuta HOM05D007188 ORTHO05D009102 3.6e-51 205.7 172 58.7
Carub.0003s0959 Capsella rubella HOM05D007188 ORTHO05D009102 1.4e-50 203.8 168 60.1
Nitab4.5_0001760g0020 Nicotiana tabacum HOM05D007188 ORTHO05D009102 3.7e-48 195.7 177 58.2
Haze_16743 Corylus avellana HOM05D007188 ORTHO05D009102 8.2e-48 194.5 217 53.9
THA.LOC104826897 Tarenaya hassleriana HOM05D007188 ORTHO05D009102 1.1e-47 194.1 219 51.1
COL.COLO4_36178 Corchorus olitorius HOM05D007188 ORTHO05D009102 9.1e-47 191.0 204 49.5
Thecc.10G085100 Theobroma cacao HOM05D007188 ORTHO05D009102 1.0e-45 187.6 163 60.1
Dinv31237 Davidia involucrata HOM05D007188 ORTHO05D009102 3.8e-45 185.7 133 69.2
BcaC01g04184 Brassica carinata HOM05D007188 ORTHO05D009102 5.0e-45 185.3 177 54.2
Prupe.2G208300 Prunus persica HOM05D007188 ORTHO05D009102 6.5e-45 184.9 133 69.2
Sopen02g011440 Solanum pennellii HOM05D007188 ORTHO05D009102 1.2e-43 180.6 137 64.2
EL10Ac4g08743 Beta vulgaris HOM05D007188 ORTHO05D009102 5.1e-42 175.3 151 58.9
vmacro04839 Vaccinium macrocarpon HOM05D007188 ORTHO05D009102 2.2e-40 169.9 170 54.7
Pp3c2_18450 Physcomitrium patens HOM05D007188 ORTHO05D009102 2.0e-38 163.3 173 49.1
Hund14950 Selenicereus undatus HOM05D007188 ORTHO05D009102 1.0e-37 161.0 125 64.0
Mapoly0050s0048 Marchantia polymorpha HOM05D007188 ORTHO05D009102 1.6e-35 153.7 157 45.9
Mapoly0278s0008 Marchantia polymorpha HOM05D007188 ORTHO05D009102 1.6e-35 153.7 157 45.9
Nitab4.5_0000096g0330 Nicotiana tabacum HOM05D007188 ORTHO05D009102 2.3e-34 149.8 177 49.7
Ciclev10033195m.g Citrus clementina HOM05D007188 ORTHO05D009102 2.2e-32 143.3 87 77.0
SMO358G0267 Selaginella moellendorffii HOM05D007188 ORTHO05D009102 1.1e-28 131.0 158 42.4
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 5.5e-28 128.6 157 42.7
FvH4_7g18710 Fragaria vesca HOM05D007188 ORTHO05D009102 5.7e-25 118.6 154 46.8
PSO339G6470 Papaver somniferum HOM05D007188 ORTHO05D009102 1.9e-20 103.6 113 46.9
SEGI_08985 Sequoiadendron giganteum HOM05D007188 ORTHO05D009102 1.9e-20 103.6 72 69.4
CBR_g28804 Chara braunii HOM05D007188 ORTHO05D009102 2.5e-20 103.2 191 32.5
Rhsim09G0147800 Rhododendron simsii HOM05D007188 ORTHO05D009102 6.8e-18 95.1 213 36.6
RhsimUnG0185100 Rhododendron simsii HOM05D007188 ORTHO05D009102 2.3e-13 80.1 212 32.5
FAN10G3168 Fragaria x ananassa HOM05D007188 ORTHO05D009102 2.9e-13 79.7 122 44.3
MCO11G330 Micromonas commoda HOM05D007188 ORTHO05D009102 3.8e-13 79.3 144 30.6
PRCOL_00002171 Prasinoderma coloniale HOM05D007188 ORTHO05D009102 4.7e-11 72.4 158 31.6
Cre10.g464650 Chlamydomonas reinhardtii HOM05D007188 ORTHO05D009102 1.2e-09 67.8 131 27.5
Oeu034116.1 Olea europaea HOM05D007188 ORTHO05D009102 1.2e-09 67.8 48 66.7
AUR62034156 Chenopodium quinoa HOM05D007188 ORTHO05D009102 2.6e-09 66.6 53 64.2
HPP92_025582 Vanilla planifolia HOM05D006951 ORTHO05D008594 4.4e-09 65.9 50 54.0
HPP92_025583 Vanilla planifolia HOM05D006951 ORTHO05D008594 5.7e-09 65.5 44 68.2
VMungo1080G0524 Vigna mungo HOM05D007188 ORTHO05D008722 2.9e-08 63.2 32 90.6
vmacro04837 Vaccinium macrocarpon HOM05D000026 ORTHO05D000094 5.4e-07 58.9 39 71.8
CDE02G0641 Ceratophyllum demersum HOM05D000146 ORTHO05D002110 2.7e-06 56.6 65 50.8


User provided reference genes

Program Settings