Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0025661 Lotus japonicus HOM05D005417 ORTHO05D002591 9.0e-143 510.8 304 100.0
Lj1g0009273 Lotus japonicus HOM05D005417 ORTHO05D002591 5.6e-36 156.0 348 41.7
Medtr7g055560 Medicago truncatula HOM05D005417 ORTHO05D002591 2.5e-23 114.0 203 40.9
Medtr7g055747 Medicago truncatula HOM05D005417 ORTHO05D002591 2.5e-23 114.0 203 40.9
Phvul.008G132000 Phaseolus vulgaris HOM05D005417 ORTHO05D002591 3.5e-22 110.2 290 39.3
Psat3g149440 Pisum sativum HOM05D005417 ORTHO05D002591 2.3e-21 107.5 353 32.0
Glyma.08G348101 Glycine max HOM05D005417 ORTHO05D002591 5.7e-20 102.8 275 36.4
Ca_03471_v3 Cicer arietinum L. HOM05D005417 ORTHO05D002591 1.4e-18 98.2 200 43.5
Glyma.18G159700 Glycine max HOM05D005417 ORTHO05D002591 7.6e-17 92.4 279 39.4
VMungo1383G0191 Vigna mungo HOM05D005417 ORTHO05D002591 6.5e-16 89.4 371 33.4
Lalb_Chr03g0041401 Lupinus albus HOM05D005417 ORTHO05D002591 1.4e-15 88.2 151 41.7
CiPaw.14G038800 Carya illinoinensis HOM05D005417 ORTHO05D002591 1.6e-14 84.7 184 37.5
Manes.12G047700 Manihot esculenta HOM05D005417 ORTHO05D002591 7.9e-14 82.4 143 44.1
arahy.Tifrunner.gnm1.ann1.K8JSLF Arachis hypogaea HOM05D005417 ORTHO05D002591 1.0e-13 82.0 336 29.8
COL.COLO4_08651 Corchorus olitorius HOM05D005417 ORTHO05D002591 1.5e-12 78.2 142 38.0
Nitab4.5_0003656g0060 Nicotiana tabacum HOM05D005417 ORTHO05D002591 2.5e-12 77.4 179 41.9
QL09p051098 Quercus lobata HOM05D005417 ORTHO05D002591 2.5e-12 77.4 182 34.6
Potri.002G246400 Populus trichocarpa HOM05D005417 ORTHO05D002591 3.3e-12 77.0 180 35.0
CSS0019537 Camellia sinensis var. sinensis HOM05D005417 ORTHO05D002591 4.3e-12 76.6 145 35.2
QL09p050923 Quercus lobata HOM05D005417 ORTHO05D002591 5.7e-12 76.3 182 34.6
Sabra02G0187500 Salix brachista HOM05D005417 ORTHO05D002591 5.7e-12 76.3 180 34.4
CiPaw.13G049000 Carya illinoinensis HOM05D005417 ORTHO05D002591 9.7e-12 75.5 165 40.6
Thecc.01G219200 Theobroma cacao HOM05D005417 ORTHO05D002591 1.3e-11 75.1 151 46.4
ClCG07G002110 Citrullus lanatus HOM05D005417 ORTHO05D002591 1.6e-11 74.7 134 39.6
MELO3C022719.2 Cucumis melo HOM05D005417 ORTHO05D002591 2.2e-11 74.3 138 43.5
Gorai.007G156400 Gossypium raimondii HOM05D005417 ORTHO05D002591 2.8e-11 73.9 174 37.4
Prupe.8G197900 Prunus persica HOM05D005417 ORTHO05D002591 4.8e-11 73.2 167 40.1
Gohir.D11G145866 Gossypium hirsutum HOM05D005417 ORTHO05D002591 6.3e-11 72.8 174 36.8
Cpa.g.sc34.103 Carica papaya HOM05D005417 ORTHO05D002591 8.2e-11 72.4 160 40.0
Duzib211G0292 Durio zibethinus HOM05D005417 ORTHO05D002591 1.1e-10 72.0 195 32.8
Cfa010419 Carpinus fangiana HOM05D005417 ORTHO05D002591 1.4e-10 71.6 138 42.8
DCAR_012672 Daucus carota HOM05D005417 ORTHO05D002591 1.8e-10 71.2 157 40.8
Gohir.A11G139800 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.8e-10 71.2 183 34.4
Nitab4.5_0001161g0100 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.8e-10 71.2 140 47.9
Dinv19167 Davidia involucrata HOM05D005417 ORTHO05D002591 2.4e-10 70.9 152 43.4
MD05G1170600 Malus domestica HOM05D005417 ORTHO05D002591 3.1e-10 70.5 140 49.3
Manes.13G049800 Manihot esculenta HOM05D005417 ORTHO05D002591 4.1e-10 70.1 145 37.9
Gohir.A07G092900 Gossypium hirsutum HOM05D005417 ORTHO05D002591 6.9e-10 69.3 146 36.3
FAN15G1498 Fragaria x ananassa HOM05D005417 ORTHO05D002591 9.0e-10 68.9 184 42.4
TWI18G1450 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 2.0e-09 67.8 200 33.5
PGR083G2240 Punica granatum HOM05D005417 ORTHO05D002591 3.4e-09 67.0 141 42.6
Actinidia39427 Actinidia chinensis HOM05D005417 ORTHO05D002591 4.5e-09 66.6 144 31.9
Migut.D02505 Erythranthe guttata HOM05D005417 ORTHO05D002591 4.5e-09 66.6 150 45.3
SGA_v2.0_scaffold156G37265 Striga asiatica HOM05D005417 ORTHO05D002591 5.9e-09 66.2 142 40.1
Peaxi162Scf00068g00216 Petunia axillaris HOM05D005417 ORTHO05D002591 7.7e-09 65.9 139 38.1
Aa31sc95G70 Aethionema arabicum HOM05D005417 ORTHO05D002591 1.3e-08 65.1 136 45.6
Ciclev10024373m.g Citrus clementina HOM05D005417 ORTHO05D002591 1.3e-08 65.1 145 46.9
SalBow6G1220 Salvia bowleyana HOM05D005417 ORTHO05D002591 1.3e-08 65.1 179 30.7
TWI75G1481 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 1.3e-08 65.1 174 35.1
Oeu007785.1 Olea europaea HOM05D005417 ORTHO05D002591 1.7e-08 64.7 138 34.1
MSTRG.18834 Avicennia marina HOM05D005417 ORTHO05D002591 2.2e-08 64.3 138 39.1
Dinv12644 Davidia involucrata HOM05D005417 ORTHO05D002591 2.2e-08 64.3 186 35.5
Solyc06g007790.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 2.2e-08 64.3 139 34.5
Sopen06g002670 Solanum pennellii HOM05D005417 ORTHO05D002591 2.2e-08 64.3 139 34.5
Gohir.D07G097400 Gossypium hirsutum HOM05D005417 ORTHO05D002591 5.0e-08 63.2 146 41.8
Rhsim13G0048000 Rhododendron simsii HOM05D005417 ORTHO05D002591 5.0e-08 63.2 145 37.9
CAN.G181.55 Capsicum annuum HOM05D005417 ORTHO05D002591 6.5e-08 62.8 161 32.3
PGSC0003DMG400022034 Solanum tuberosum HOM05D005417 ORTHO05D002591 8.5e-08 62.4 139 34.5
Nn1g07983 Nelumbo nucifera HOM05D005417 ORTHO05D002591 1.1e-07 62.0 141 41.1
Atru.chr6.1429 Acer truncatum HOM05D005417 ORTHO05D002591 1.4e-07 61.6 194 34.5
Aqoxy2G03972 Aquilegia oxysepala HOM05D005417 ORTHO05D002591 1.4e-07 61.6 140 32.9
Nitab4.5_0002641g0180 Nicotiana tabacum HOM05D005417 ORTHO05D002591 2.5e-07 60.8 151 32.5
SGA_v2.0_scaffold3G01638 Striga asiatica HOM05D005417 ORTHO05D002591 2.5e-07 60.8 124 37.9
vmacro14737 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 2.5e-07 60.8 146 39.7
ECA248G2280 Erigeron canadensis HOM05D005417 ORTHO05D002591 3.2e-07 60.5 143 44.1
TAR636G0419 Trochodendron aralioides HOM05D005417 ORTHO05D002591 3.2e-07 60.5 126 37.3
MSTRG.20970 Avicennia marina HOM05D005417 ORTHO05D002591 4.2e-07 60.1 151 41.7
RcHm_v2.0_Chr6g0284001 Rosa chinensis HOM05D005417 ORTHO05D002591 4.2e-07 60.1 137 49.6
EL10Ac7g17913 Beta vulgaris HOM05D005417 ORTHO05D002591 5.5e-07 59.7 144 43.8
Lsat_1_v5_gn_9_14981 Lactuca sativa HOM05D005417 ORTHO05D002591 5.5e-07 59.7 142 45.1
Nitab4.5_0002985g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 7.2e-07 59.3 159 30.8
BcaC06g35784 Brassica carinata HOM05D005417 ORTHO05D002591 9.4e-07 58.9 150 41.3
C07p10920 Brassica napus HOM05D005417 ORTHO05D002591 9.4e-07 58.9 150 41.3
BolC7t41558H Brassica oleracea HOM05D005417 ORTHO05D002591 9.4e-07 58.9 150 41.3
Cc01_g16680 Coffea canephora HOM05D005417 ORTHO05D002591 9.4e-07 58.9 145 32.4
Peaxi162Scf00372g00102 Petunia axillaris HOM05D005417 ORTHO05D002591 9.4e-07 58.9 278 25.5
AL3G40820 Arabidopsis lyrata HOM05D005417 ORTHO05D002591 1.2e-06 58.5 147 42.2
PGSC0003DMG400017495 Solanum tuberosum HOM05D005417 ORTHO05D002591 1.2e-06 58.5 153 41.8
AT3G25130 Arabidopsis thaliana HOM05D005417 ORTHO05D002591 1.6e-06 58.2 146 45.9
Eucgr.K02134 Eucalyptus grandis HOM05D005417 ORTHO05D002591 1.6e-06 58.2 312 27.2
FAN27G1148 Fragaria x ananassa HOM05D005417 ORTHO05D002591 1.6e-06 58.2 192 39.6
Sc05g0001930 Simmondsia chinensis HOM05D005417 ORTHO05D002591 2.7e-06 57.4 141 44.7
Rhsim01G0253400 Rhododendron simsii HOM05D005417 ORTHO05D002591 3.6e-06 57.0 145 38.6
Solyc09g059550.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 3.6e-06 57.0 138 44.2
PSO017G4959 Papaver somniferum HOM05D005417 ORTHO05D002591 4.6e-06 56.6 137 43.1
Sp3g22720 Schrenkiella parvula HOM05D005417 ORTHO05D002591 4.6e-06 56.6 135 47.4
TPR.G976 Trifolium pratense HOM05D005417 ORTHO05D002591 4.6e-06 56.6 63 55.6
Carub.0003s2546 Capsella rubella HOM05D005417 ORTHO05D002591 6.1e-06 56.2 145 44.8
FvH4_2g18490 Fragaria vesca HOM05D005417 ORTHO05D002591 6.1e-06 56.2 184 39.7
FAN24G0779 Fragaria x ananassa HOM05D005417 ORTHO05D002591 6.1e-06 56.2 184 39.7
Sopen09g022730 Solanum pennellii HOM05D005417 ORTHO05D002591 7.9e-06 55.8 138 44.2


User provided reference genes

Program Settings