Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 6.8e-155 550.8 318 100.0
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 9.1e-152 540.4 320 98.4
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 3.7e-129 465.3 321 86.9
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 1.4e-128 463.4 321 86.6
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 7.3e-125 451.1 322 84.8
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 2.2e-121 439.5 281 81.1
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 1.2e-119 433.7 286 79.0
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 1.2e-119 433.7 286 79.0
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 2.7e-119 432.6 328 80.5
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 7.8e-119 431.0 284 81.3
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 4.3e-117 425.2 281 80.1
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 1.6e-116 423.3 321 80.1
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 3.1e-115 419.1 282 76.6
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 1.2e-114 417.2 283 75.6
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 2.3e-102 376.3 327 72.2
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 1.6e-100 370.2 289 70.6
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 3.6e-100 369.0 322 71.4
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 3.2e-96 355.9 325 68.0
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 5.4e-96 355.1 284 66.5
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 1.6e-95 353.6 323 70.3
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 2.1e-95 353.2 295 66.4
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 1.8e-94 350.1 284 66.2
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 8.7e-94 347.8 336 68.5
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 1.9e-93 346.7 285 66.0
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 2.8e-92 342.8 285 67.0
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.8e-92 342.8 285 67.0
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.8e-92 342.8 285 67.0
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 3.1e-91 339.3 285 67.0
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 4.0e-91 339.0 285 67.0
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.5e-90 337.0 285 66.3
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 1.5e-90 337.0 288 63.2
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 4.5e-90 335.5 324 69.1
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 5.8e-90 335.1 287 64.5
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 5.8e-90 335.1 335 66.3
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 9.3e-88 327.8 303 62.0
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 4.6e-87 325.5 321 67.0
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 5.1e-86 322.0 285 61.4
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 6.7e-86 321.6 265 64.5
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 9.0e-83 311.2 324 64.8
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 3.4e-82 309.3 286 61.2
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 4.9e-81 305.4 280 61.1
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 2.5e-80 303.1 322 62.4
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 7.1e-80 301.6 299 58.2
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 4.8e-76 288.9 291 57.7
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 1.3e-73 280.8 280 57.9
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 2.9e-73 279.6 326 60.7
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 1.4e-72 277.3 287 55.7
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 7.2e-72 275.0 284 57.4
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 2.7e-71 273.1 287 57.1
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 3.6e-71 272.7 293 54.9
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 6.1e-71 271.9 293 54.9
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.3e-70 270.0 281 55.2
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 2.3e-70 270.0 290 57.6
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 3.0e-70 269.6 289 55.0
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 3.9e-70 269.2 277 56.3
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 5.1e-70 268.9 293 56.0
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 6.7e-70 268.5 285 55.4
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 6.7e-70 268.5 294 56.5
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 8.8e-70 268.1 286 55.2
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 4.3e-69 265.8 285 55.1
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 5.7e-69 265.4 287 54.0
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 1.3e-68 264.2 290 54.5
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 6.3e-68 261.9 284 56.3
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 1.1e-67 261.2 287 54.4
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 1.8e-67 260.4 293 53.2
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 4.1e-67 259.2 284 54.9
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 4.1e-67 259.2 307 53.7
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 9.1e-67 258.1 320 51.2
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 2.0e-66 256.9 292 54.5
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 3.4e-66 256.1 293 53.9
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 5.9e-66 255.4 315 50.5
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 5.9e-66 255.4 315 50.5
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 1.3e-65 254.2 295 53.6
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 2.2e-65 253.4 283 54.8
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 2.2e-65 253.4 283 51.9
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 5.0e-65 252.3 296 51.7
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 6.5e-65 251.9 285 52.6
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 8.5e-65 251.5 283 53.7
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 3.2e-64 249.6 305 50.2
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 3.2e-64 249.6 285 52.3
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 9.4e-64 248.1 287 52.6
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 4.7e-63 245.7 278 52.2
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 6.1e-63 245.4 311 50.8
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.0e-62 244.6 285 51.2
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 2.3e-62 243.4 278 52.9
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 2.3e-62 243.4 280 52.9
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 3.0e-62 243.0 293 51.5
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 8.8e-62 241.5 239 58.6
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 1.1e-61 241.1 286 53.8
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 4.4e-61 239.2 234 56.8
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 5.7e-61 238.8 288 49.0
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 5.7e-61 238.8 292 52.1
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 9.7e-61 238.0 290 50.3
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 8.2e-60 235.0 298 51.0
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 8.2e-60 235.0 292 50.7
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 8.2e-60 235.0 246 57.3
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 1.4e-59 234.2 300 47.7
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 9.1e-59 231.5 277 52.0
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 1.2e-58 231.1 284 50.7
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 1.5e-58 230.7 289 49.1
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 1.5e-58 230.7 296 48.3
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 2.6e-58 229.9 304 50.0
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 3.5e-58 229.6 311 48.9
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 4.5e-58 229.2 282 50.4
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 5.9e-58 228.8 279 48.7
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 1.0e-57 228.0 286 50.3
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 1.0e-57 228.0 289 48.8
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 1.7e-57 227.3 294 51.4
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 3.8e-57 226.1 307 47.2
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 3.2e-56 223.0 303 46.9
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 3.2e-56 223.0 288 50.0
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 9.4e-56 221.5 271 48.3
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 2.7e-55 219.9 263 55.5
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 3.6e-55 219.5 289 47.4
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 1.4e-54 217.6 271 49.8
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 1.8e-54 217.2 284 50.4
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 8.8e-54 214.9 329 41.9
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 1.5e-53 214.2 292 47.3
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 9.7e-53 211.5 288 46.5
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 2.4e-51 206.8 261 48.3
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 7.0e-51 205.3 242 51.7
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 7.0e-51 205.3 291 47.1
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 7.7e-50 201.8 166 66.3
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 2.5e-48 196.8 279 44.8
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 2.5e-48 196.8 220 52.7
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 2.5e-48 196.8 194 53.6
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 9.4e-48 194.9 163 64.4
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 6.1e-47 192.2 300 46.7
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 3.0e-46 189.9 220 51.4
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.5e-45 187.6 283 45.9
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 2.2e-44 183.7 283 42.8
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 3.1e-43 179.9 284 42.6
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 9.1e-43 178.3 176 58.0
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 2.0e-42 177.2 290 42.8
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 5.9e-42 175.6 183 54.1
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 2.9e-41 173.3 135 63.0
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 5.0e-41 172.6 161 59.0
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 1.2e-37 161.4 285 38.6
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 1.5e-37 161.0 279 42.7
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 1.7e-36 157.5 270 40.0
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 5.9e-34 149.1 126 61.1
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 1.0e-33 148.3 282 37.9
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 1.1e-32 144.8 118 59.3
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.9e-32 144.1 160 51.2
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 2.1e-31 140.6 230 43.0
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 2.8e-31 140.2 136 55.9
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 3.6e-31 139.8 129 54.3
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 6.8e-30 135.6 283 35.3
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 6.8e-30 135.6 211 43.1
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 1.7e-28 131.0 273 37.0
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 4.9e-28 129.4 77 77.9
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 7.0e-27 125.6 171 63.2
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 2.8e-23 113.6 174 46.0
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 2.8e-23 113.6 251 34.7
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 2.9e-12 77.0 56 64.3
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 2.4e-11 73.9 161 41.0
Nn091s42875 Nelumbo nucifera HOM05D004323 ORTHO05D005140 4.1e-11 73.2 105 45.7
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 3.9e-09 66.6 48 62.5
Sed0022868 Sechium edule HOM05D004323 ORTHO05D005140 3.9e-09 66.6 53 67.9
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.5e-08 63.9 135 38.5
Medtr7g114200 Medicago truncatula HOM05D063531 ORTHO05D005140 1.6e-07 61.2 40 70.0
SEGI_05570 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 2.1e-07 60.8 106 43.4
QL02p048579 Quercus lobata HOM05D004323 ORTHO05D005140 3.6e-07 60.1 112 40.2
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 3.1e-06 57.0 162 34.0


User provided reference genes

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