Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0025072 Lotus japonicus HOM05D004095 ORTHO05D003197 1.8e-146 522.7 290 100.0
Medtr1g034990 Medicago truncatula HOM05D013708 ORTHO05D003197 1.3e-51 207.6 311 53.7
Ca_13423_v3 Cicer arietinum L. HOM05D013708 ORTHO05D003197 2.3e-48 196.8 330 47.6
Ca_13439_v3 Cicer arietinum L. HOM05D013708 ORTHO05D003197 2.3e-48 196.8 330 47.6
Medtr1g025620 Medicago truncatula HOM05D013708 ORTHO05D003197 6.2e-46 188.7 362 46.1
TPR.G26385 Trifolium pratense HOM05D013708 ORTHO05D003197 4.0e-45 186.0 445 39.6
TPR.G32858 Trifolium pratense HOM05D013708 ORTHO05D003197 6.0e-41 172.2 314 47.5
Lalb_Chr08g0246191 Lupinus albus HOM05D004095 ORTHO05D003197 6.6e-40 168.7 314 47.5
arahy.Tifrunner.gnm1.ann1.I59WU7 Arachis hypogaea HOM05D004095 ORTHO05D003197 2.9e-35 153.3 316 45.3
Glyma.17G259300 Glycine max HOM05D013708 ORTHO05D003197 4.1e-34 149.4 472 30.9
Glyma.14G220400 Glycine max HOM05D013708 ORTHO05D003197 1.6e-33 147.5 436 31.7
arahy.Tifrunner.gnm1.ann1.VNIF6J Arachis hypogaea HOM05D004095 ORTHO05D003197 2.1e-33 147.1 322 45.0
VMungo0647G0628 Vigna mungo HOM05D013708 ORTHO05D003197 9.5e-31 138.3 240 51.7
Psat6g003360 Pisum sativum HOM05D013708 ORTHO05D003197 2.8e-30 136.7 537 31.7
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 7.6e-28 128.6 321 37.7
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 4.6e-25 119.4 307 37.8
Phvul.001G004700 Phaseolus vulgaris HOM05D013708 ORTHO05D003197 6.0e-25 119.0 238 47.9
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 1.0e-24 118.2 317 36.3
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 1.7e-24 117.5 327 35.5
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 1.7e-24 117.5 315 38.4
Duzib093G1456 Durio zibethinus HOM05D004095 ORTHO05D003197 1.1e-23 114.8 312 36.5
Potri.002G019200 Populus trichocarpa HOM05D004095 ORTHO05D003197 2.1e-22 110.5 302 31.1
Lj4A21T58 Lonicera japonica HOM05D004095 ORTHO05D003197 2.8e-22 110.2 352 36.1
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 3.6e-22 109.8 317 38.2
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 4.7e-22 109.4 330 33.9
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 1.1e-21 108.2 315 37.8
Dinv31870 Davidia involucrata HOM05D004095 ORTHO05D003197 1.4e-21 107.8 330 33.3
Peaxi162Scf00860g00422 Petunia axillaris HOM05D004095 ORTHO05D003197 3.1e-21 106.7 305 36.7
Cfa007004 Carpinus fangiana HOM05D004095 ORTHO05D003197 4.0e-21 106.3 334 35.6
CiPaw.07G146700 Carya illinoinensis HOM05D004095 ORTHO05D003197 1.5e-20 104.4 322 32.6
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 2.0e-20 104.0 325 35.4
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 2.6e-20 103.6 330 33.6
Manes.18G010907 Manihot esculenta HOM05D004095 ORTHO05D003197 9.9e-20 101.7 316 33.9
Sc15g0004790 Simmondsia chinensis HOM05D004095 ORTHO05D003197 3.8e-19 99.8 352 36.4
Thecc.08G047900 Theobroma cacao HOM05D004095 ORTHO05D003197 1.4e-18 97.8 305 35.1
DCAR_009498 Daucus carota HOM05D004095 ORTHO05D003197 5.4e-18 95.9 381 34.4
Potri.005G242400 Populus trichocarpa HOM05D004095 ORTHO05D003197 7.1e-18 95.5 307 32.9
Eucgr.I02328 Eucalyptus grandis HOM05D004095 ORTHO05D003197 1.2e-17 94.7 330 34.2
EL10Ac3g06641 Beta vulgaris HOM05D004095 ORTHO05D003197 2.1e-17 94.0 394 32.5
PGR031G2559 Punica granatum HOM05D004095 ORTHO05D003197 3.5e-17 93.2 329 34.3
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.0e-16 91.7 338 34.6
Haze_22667 Corylus avellana HOM05D004095 ORTHO05D003197 1.3e-16 91.3 326 35.3
TAR376G0784 Trochodendron aralioides HOM05D004095 ORTHO05D003197 1.3e-16 91.3 326 32.2
Duzib041G0318 Durio zibethinus HOM05D004095 ORTHO05D003197 1.7e-16 90.9 300 37.3
MSTRG.25264 Avicennia marina HOM05D004095 ORTHO05D003197 3.0e-16 90.1 362 31.8
Duzib187G0006 Durio zibethinus HOM05D004095 ORTHO05D003197 3.0e-16 90.1 336 34.5
Sed0017695 Sechium edule HOM05D004095 ORTHO05D003197 3.9e-16 89.7 317 34.1
CAN.G1517.6 Capsicum annuum HOM05D004095 ORTHO05D003197 5.1e-16 89.4 329 37.4
Aqoxy5G01820 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 6.6e-16 89.0 329 35.9
MELO3C011353.2 Cucumis melo HOM05D004095 ORTHO05D003197 6.6e-16 89.0 339 31.9
Lj4A799T84 Lonicera japonica HOM05D004095 ORTHO05D003197 1.5e-15 87.8 304 35.5
SGA_v2.0_scaffold11G05941 Striga asiatica HOM05D004095 ORTHO05D003197 1.5e-15 87.8 309 35.0
MSTRG.1174 Avicennia marina HOM05D004095 ORTHO05D003197 3.3e-15 86.7 349 33.5
Sabra02G0015500 Salix brachista HOM05D004095 ORTHO05D003197 4.3e-15 86.3 223 32.7
Duzib147G0922 Durio zibethinus HOM05D004095 ORTHO05D003197 5.6e-15 85.9 332 31.3
TWI36G1615 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 5.6e-15 85.9 241 34.0
BolC1t00292H Brassica oleracea HOM05D004095 ORTHO05D003197 9.6e-15 85.1 317 32.2
Duzib264G0091 Durio zibethinus HOM05D004095 ORTHO05D003197 9.6e-15 85.1 334 32.0
ClCG08G014140 Citrullus lanatus HOM05D004095 ORTHO05D003197 1.3e-14 84.7 338 32.2
Oeu061977.1 Olea europaea HOM05D004095 ORTHO05D003197 1.3e-14 84.7 349 34.4
AUR62040566 Chenopodium quinoa HOM05D004095 ORTHO05D003197 1.6e-14 84.3 339 28.9
Sabra05G0187500 Salix brachista HOM05D004095 ORTHO05D003197 1.6e-14 84.3 225 31.1
unitig_749.g13901 Utricularia gibba HOM05D004095 ORTHO05D003197 2.1e-14 84.0 315 34.9
Cfa013982 Carpinus fangiana HOM05D004095 ORTHO05D003197 2.8e-14 83.6 309 29.1
Gorai.009G193100 Gossypium raimondii HOM05D004095 ORTHO05D003197 3.6e-14 83.2 301 35.2
Gohir.A02G172400 Gossypium hirsutum HOM05D004095 ORTHO05D003197 4.8e-14 82.8 340 32.9
CsaV3_2G024280 Cucumis sativus L. HOM05D004095 ORTHO05D003197 6.2e-14 82.4 335 34.9
Gohir.D03G007700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 6.2e-14 82.4 335 33.4
Nitab4.5_0006505g0050 Nicotiana tabacum HOM05D004095 ORTHO05D003197 6.2e-14 82.4 366 32.2
PGSC0003DMG400029333 Solanum tuberosum HOM05D004095 ORTHO05D003197 6.2e-14 82.4 314 31.8
Actinidia15439 Actinidia chinensis HOM05D004095 ORTHO05D003197 8.1e-14 82.0 179 45.3
Gohir.D05G187800 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.4e-13 81.3 301 34.6
MSTRG.22345 Avicennia marina HOM05D004095 ORTHO05D003197 1.8e-13 80.9 316 32.6
Hund01666 Selenicereus undatus HOM05D004095 ORTHO05D003197 1.8e-13 80.9 359 34.3
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 2.4e-13 80.5 326 32.2
COL.COLO4_22466 Corchorus olitorius HOM05D004095 ORTHO05D003197 3.1e-13 80.1 317 26.8
C01p03060 Brassica napus HOM05D004095 ORTHO05D003197 4.0e-13 79.7 327 31.8
Gohir.A05G185000 Gossypium hirsutum HOM05D004095 ORTHO05D003197 4.0e-13 79.7 301 32.9
Atru.chr3.863_Atru.chr3.864 Acer truncatum HOM05D004095 ORTHO05D003197 5.3e-13 79.3 376 26.3
Gohir.A01G110100 Gossypium hirsutum HOM05D004095 ORTHO05D003197 5.3e-13 79.3 303 34.3
Sed0007913 Sechium edule HOM05D004095 ORTHO05D003197 6.9e-13 79.0 320 33.4
C07p23350 Brassica napus HOM05D008819 ORTHO05D003197 9.0e-13 78.6 307 31.3
PSO675G0587 Papaver somniferum HOM05D004095 ORTHO05D003197 9.0e-13 78.6 316 33.9
Aa31LG7G4540 Aethionema arabicum HOM05D008819 ORTHO05D003197 1.2e-12 78.2 312 28.5
Gohir.D01G096700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.2e-12 78.2 303 35.0
SalBow7G2790 Salvia bowleyana HOM05D004095 ORTHO05D003197 1.2e-12 78.2 382 32.5
THA.LOC104813782 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 1.5e-12 77.8 318 34.9
BcaNung03339 Brassica carinata HOM05D008819 ORTHO05D003197 2.0e-12 77.4 307 31.3
Hma1.2p1_0023F.1_g015650 Hydrangea macrophylla HOM05D004095 ORTHO05D003197 2.0e-12 77.4 235 31.1
Potri.005G242300 Populus trichocarpa HOM05D004095 ORTHO05D003197 3.4e-12 76.6 293 29.0
PSO541G2818 Papaver somniferum HOM05D004095 ORTHO05D003197 5.8e-12 75.9 317 32.8
SGA_v2.0_scaffold19G08554 Striga asiatica HOM05D004095 ORTHO05D003197 9.9e-12 75.1 347 31.4
CiPaw.08G067700 Carya illinoinensis HOM05D004095 ORTHO05D003197 1.7e-11 74.3 327 31.2
Prupe.1G362800 Prunus persica HOM05D004095 ORTHO05D003197 2.9e-11 73.6 236 28.4
BcaNung00778 Brassica carinata HOM05D004095 ORTHO05D003197 4.9e-11 72.8 329 32.5
Actinidia17001 Actinidia chinensis HOM05D004095 ORTHO05D003197 6.4e-11 72.4 182 41.2
COL.COLO4_26117 Corchorus olitorius HOM05D004095 ORTHO05D003197 6.4e-11 72.4 303 28.1
Nn5g30782 Nelumbo nucifera HOM05D004095 ORTHO05D003197 6.4e-11 72.4 334 33.5
AT1G20100 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 8.4e-11 72.0 314 33.4
A01p02760 Brassica napus HOM05D004095 ORTHO05D003197 8.4e-11 72.0 330 32.7
CARHR244340 Cardamine hirsuta HOM05D004095 ORTHO05D003197 1.1e-10 71.6 333 32.4
AT1G75860 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 1.4e-10 71.2 319 32.9
Aqoxy6G02168 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 2.4e-10 70.5 315 34.0
BolC7t42868H Brassica oleracea HOM05D008819 ORTHO05D003197 2.4e-10 70.5 307 29.6
Peaxi162Scf00064g00737 Petunia axillaris HOM05D004095 ORTHO05D003197 3.2e-10 70.1 201 41.3
Migut.O00908 Erythranthe guttata HOM05D004095 ORTHO05D003197 5.4e-10 69.3 296 26.0
FvH4_2g38160 Fragaria vesca HOM05D004095 ORTHO05D003197 5.4e-10 69.3 306 30.7
THA.LOC104804274 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 7.1e-10 68.9 348 29.0
Haze_03728 Corylus avellana HOM05D004095 ORTHO05D003197 9.3e-10 68.6 268 29.1
FAN27G1813 Fragaria x ananassa HOM05D004095 ORTHO05D003197 9.3e-10 68.6 295 30.2
FAN20G0678 Fragaria x ananassa HOM05D004095 ORTHO05D003197 1.2e-09 68.2 312 29.8
HanXRQChr12g0366821 Helianthus annuus HOM05D004095 ORTHO05D003197 1.6e-09 67.8 231 36.8
Lsat_1_v5_gn_8_29800 Lactuca sativa HOM05D004095 ORTHO05D003197 1.6e-09 67.8 198 42.4
AUR62041467 Chenopodium quinoa HOM05D004095 ORTHO05D003197 2.1e-09 67.4 383 27.9
PSO170G2543 Papaver somniferum HOM05D004095 ORTHO05D003197 2.1e-09 67.4 353 26.9
RcHm_v2.0_Chr6g0303321 Rosa chinensis HOM05D004095 ORTHO05D003197 2.7e-09 67.0 296 33.1
Migut.N03174 Erythranthe guttata HOM05D004095 ORTHO05D003197 4.6e-09 66.2 295 30.2
FAN15G2156 Fragaria x ananassa HOM05D004095 ORTHO05D003197 4.6e-09 66.2 317 25.9
AL2G35870 Arabidopsis lyrata HOM05D008819 ORTHO05D003197 6.0e-09 65.9 243 28.0
CARHR069410 Cardamine hirsuta HOM05D008819 ORTHO05D003197 6.0e-09 65.9 214 26.6
BraA06t24727Z Brassica rapa HOM05D008819 ORTHO05D003197 7.9e-09 65.5 312 30.1
MBI05_g23379_MAGBIO Magnolia biondii HOM05D004095 ORTHO05D003197 7.9e-09 65.5 172 37.8
BcaC05g25908 Brassica carinata HOM05D008819 ORTHO05D003197 1.0e-08 65.1 306 29.7
C05p18590 Brassica napus HOM05D008819 ORTHO05D003197 1.0e-08 65.1 306 29.7
BraA01t00262Z Brassica rapa HOM05D004095 ORTHO05D003197 1.0e-08 65.1 349 31.8
Prupe.1G362500 Prunus persica HOM05D004095 ORTHO05D003197 1.0e-08 65.1 225 27.1
QL02p012206 Quercus lobata HOM05D004095 ORTHO05D003197 1.0e-08 65.1 90 48.9
THA.LOC104809551 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 1.8e-08 64.3 261 29.5
Oeu026642.1 Olea europaea HOM05D004095 ORTHO05D003197 2.3e-08 63.9 242 30.6
THA.LOC104807504 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 2.3e-08 63.9 343 30.3
A03p63990 Brassica napus HOM05D004095 ORTHO05D003197 3.0e-08 63.5 366 27.9
CSS0036757 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 3.0e-08 63.5 307 26.1
Oeu007365.1 Olea europaea HOM05D004095 ORTHO05D003197 3.0e-08 63.5 242 29.3
A07p41430 Brassica napus HOM05D008819 ORTHO05D003197 3.9e-08 63.2 226 30.5
Gorai.002G122400 Gossypium raimondii HOM05D004095 ORTHO05D003197 3.9e-08 63.2 241 31.5
PSO700G0117 Papaver somniferum HOM05D004095 ORTHO05D003197 6.7e-08 62.4 362 29.6
BolC5t30570H Brassica oleracea HOM05D008819 ORTHO05D003197 8.7e-08 62.0 308 30.8
Gorai.008G131100 Gossypium raimondii HOM05D004095 ORTHO05D003197 8.7e-08 62.0 241 29.9
Sp1g17870 Schrenkiella parvula HOM05D008819 ORTHO05D003197 8.7e-08 62.0 229 26.6
BraA03t15466Z Brassica rapa HOM05D004095 ORTHO05D003197 1.1e-07 61.6 369 27.4
FAN19G1292 Fragaria x ananassa HOM05D024588 ORTHO05D003197 1.1e-07 61.6 154 39.0
BcaC08g47079 Brassica carinata HOM05D008819 ORTHO05D003197 1.5e-07 61.2 224 29.5
Dinv39538 Davidia involucrata HOM05D004095 ORTHO05D003197 1.5e-07 61.2 139 48.9
AL7G15100 Arabidopsis lyrata HOM05D004095 ORTHO05D003197 2.5e-07 60.5 353 29.2
A06p16240 Brassica napus HOM05D008819 ORTHO05D003197 3.3e-07 60.1 304 30.9
Carub.0007s0428 Capsella rubella HOM05D004095 ORTHO05D003197 3.3e-07 60.1 347 30.5
Migut.C00862 Erythranthe guttata HOM05D004095 ORTHO05D003197 3.3e-07 60.1 367 31.1
HanXRQChr13g0387151 Helianthus annuus HOM05D004095 ORTHO05D003197 5.6e-07 59.3 213 36.2
Aa31LG4G6060 Aethionema arabicum HOM05D008819 ORTHO05D003197 7.4e-07 58.9 312 31.4
HPP92_007327 Vanilla planifolia HOM05D004095 ORTHO05D003197 7.4e-07 58.9 320 24.1
A07p03170 Brassica napus HOM05D004095 ORTHO05D003197 9.6e-07 58.5 318 27.4
Carub.0002s2277 Capsella rubella HOM05D008819 ORTHO05D003197 1.3e-06 58.2 241 28.2
Carub.0001s1963 Capsella rubella HOM05D008819 ORTHO05D003197 1.6e-06 57.8 232 29.3
Cpa.g.sc26.299 Carica papaya HOM05D004095 ORTHO05D003197 1.6e-06 57.8 88 37.5
Thhalv10019693m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 1.6e-06 57.8 233 30.0
Prupe.7G171900 Prunus persica HOM05D004095 ORTHO05D003197 2.1e-06 57.4 152 37.5
QL11p050200 Quercus lobata HOM05D004095 ORTHO05D003197 2.8e-06 57.0 329 32.2
Thhalv10008464m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 6.2e-06 55.8 307 29.6
unitig_747.g21527 Utricularia gibba HOM05D002344 ORTHO05D002954 6.2e-06 55.8 165 41.8
BcaC06g36322 Brassica carinata HOM05D004095 ORTHO05D003197 8.1e-06 55.5 321 27.1
FvH4_1g11400 Fragaria vesca HOM05D024588 ORTHO05D003197 8.1e-06 55.5 154 40.3


User provided reference genes

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