Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0024678 Lotus japonicus HOM05D006057 ORTHO05D007224 2.8e-65 251.9 137 100.0
Medtr1g085440 Medicago truncatula HOM05D006057 ORTHO05D007224 2.3e-51 205.7 136 83.1
Medtr4g118050 Medicago truncatula HOM05D006057 ORTHO05D007224 5.1e-51 204.5 136 83.8
TPR.G3097 Trifolium pratense HOM05D006057 ORTHO05D007224 1.1e-50 203.4 136 83.1
Psat6g157560 Pisum sativum HOM05D006057 ORTHO05D007224 7.4e-50 200.7 136 80.9
Medtr1g085355 Medicago truncatula HOM05D006057 ORTHO05D007224 4.8e-49 198.0 137 82.5
arahy.Tifrunner.gnm1.ann1.78VVNS Arachis hypogaea HOM05D006057 ORTHO05D007224 1.2e-47 193.4 135 77.0
arahy.Tifrunner.gnm1.ann1.TF3SPP Arachis hypogaea HOM05D006057 ORTHO05D007224 1.5e-47 193.0 135 77.0
Lalb_Chr02g0147311 Lupinus albus HOM05D006057 ORTHO05D007224 3.4e-47 191.8 135 80.7
Glyma.10G140400 Glycine max HOM05D006057 ORTHO05D007224 1.9e-45 186.0 134 77.6
Ca_10224_v3 Cicer arietinum L. HOM05D006057 ORTHO05D007224 7.2e-45 184.1 129 79.1
Phvul.007G207500 Phaseolus vulgaris HOM05D006057 ORTHO05D007224 2.1e-44 182.6 137 74.5
VMungo0720G1137 Vigna mungo HOM05D006057 ORTHO05D007224 2.2e-38 162.5 116 73.3
Glyma.20G089200 Glycine max HOM05D006057 ORTHO05D007224 2.5e-37 159.1 147 66.7
Potri.014G110300 Populus trichocarpa HOM05D006057 ORTHO05D007224 1.0e-35 153.7 122 70.5
QL09p037524 Quercus lobata HOM05D006057 ORTHO05D007224 3.9e-35 151.8 122 68.9
Gohir.D12G122500 Gossypium hirsutum HOM05D006057 ORTHO05D007224 2.6e-34 149.1 130 67.7
Gorai.008G133300 Gossypium raimondii HOM05D006057 ORTHO05D007224 2.6e-34 149.1 130 67.7
COL.COLO4_23092 Corchorus olitorius HOM05D006057 ORTHO05D007224 9.7e-34 147.1 120 67.5
Manes.05G006500 Manihot esculenta HOM05D006057 ORTHO05D007224 2.2e-33 146.0 125 68.0
Duzib138G1502 Durio zibethinus HOM05D006057 ORTHO05D007224 4.8e-33 144.8 119 66.4
Atru.chr5.830 Acer truncatum HOM05D006057 ORTHO05D007224 4.1e-32 141.7 119 65.5
Sp6g39640 Schrenkiella parvula HOM05D006057 ORTHO05D007224 9.1e-32 140.6 123 63.4
TWI14G0531 Tripterygium wilfordii HOM05D006057 ORTHO05D007224 9.1e-32 140.6 126 65.9
Eucgr.A00985 Eucalyptus grandis HOM05D006057 ORTHO05D007224 2.6e-31 139.0 121 62.8
Gohir.A12G118700 Gossypium hirsutum HOM05D006057 ORTHO05D007224 3.5e-31 138.7 130 63.1
CSS0031729 Camellia sinensis var. sinensis HOM05D006057 ORTHO05D007224 5.9e-31 137.9 131 61.8
BcaB05g21854 Brassica carinata HOM05D006057 ORTHO05D007224 7.7e-31 137.5 123 61.8
CARHR210270 Cardamine hirsuta HOM05D006057 ORTHO05D007224 1.0e-30 137.1 125 61.6
MD17G1156700 Malus domestica HOM05D006057 ORTHO05D007224 1.0e-30 137.1 129 61.2
BraA02t04741Z Brassica rapa HOM05D006057 ORTHO05D007224 1.3e-30 136.7 123 61.0
Ciclev10023548m.g Citrus clementina HOM05D006057 ORTHO05D007224 1.3e-30 136.7 97 72.2
RcHm_v2.0_Chr2g0148291 Rosa chinensis HOM05D006057 ORTHO05D007224 1.3e-30 136.7 119 58.8
Hma1.2p1_0350F.1_g132530 Hydrangea macrophylla HOM05D006057 ORTHO05D007224 1.7e-30 136.3 129 61.2
Lj1C4G2 Lonicera japonica HOM05D006057 ORTHO05D007224 2.2e-30 136.0 122 63.9
TAR633G2394 Trochodendron aralioides HOM05D006057 ORTHO05D007224 2.2e-30 136.0 125 62.4
Lju2566A1T37 Lonicera japonica HOM05D006057 ORTHO05D007224 2.9e-30 135.6 125 62.4
Sabra02G0131200 Salix brachista HOM05D006057 ORTHO05D007224 2.9e-30 135.6 128 60.2
Haze_05170 Corylus avellana HOM05D006057 ORTHO05D007224 3.8e-30 135.2 117 65.0
vmacro02351 Vaccinium macrocarpon HOM05D006057 ORTHO05D007224 3.8e-30 135.2 138 57.2
BcaC03g13034 Brassica carinata HOM05D006057 ORTHO05D007224 6.5e-30 134.4 123 60.2
BcaC03g13036 Brassica carinata HOM05D006057 ORTHO05D007224 6.5e-30 134.4 123 60.2
PGR042G0310 Punica granatum HOM05D006057 ORTHO05D007224 6.5e-30 134.4 119 63.0
Cpa.g.sc57.50 Carica papaya HOM05D006057 ORTHO05D007224 8.5e-30 134.0 131 61.8
GSVIVG01028268001 Vitis vinifera HOM05D006057 ORTHO05D007224 1.4e-29 133.3 111 64.0
AT5G03050 Arabidopsis thaliana HOM05D006057 ORTHO05D007224 1.9e-29 132.9 124 59.7
Nn4g25242 Nelumbo nucifera HOM05D006057 ORTHO05D007224 2.5e-29 132.5 129 57.4
Rhsim01G0001300 Rhododendron simsii HOM05D006057 ORTHO05D007224 2.5e-29 132.5 132 56.1
AL6G12340 Arabidopsis lyrata HOM05D006057 ORTHO05D007224 3.2e-29 132.1 124 58.9
BcaC06g32027 Brassica carinata HOM05D006057 ORTHO05D007224 9.4e-29 130.6 121 61.2
BcaNung04734 Brassica carinata HOM05D006057 ORTHO05D007224 9.4e-29 130.6 121 61.2
BolC9t60103H Brassica oleracea HOM05D006057 ORTHO05D007224 9.4e-29 130.6 121 61.2
FvH4_6g36280 Fragaria vesca HOM05D006057 ORTHO05D007224 9.4e-29 130.6 123 57.7
MBI18_g03875_MAGBIO Magnolia biondii HOM05D006057 ORTHO05D007224 9.4e-29 130.6 123 58.5
Carub.0006s0184 Capsella rubella HOM05D006057 ORTHO05D007224 1.2e-28 130.2 124 59.7
Prupe.3G028700 Prunus persica HOM05D006057 ORTHO05D007224 1.2e-28 130.2 130 59.2
Sopen03g037330 Solanum pennellii HOM05D006057 ORTHO05D007224 1.2e-28 130.2 126 58.7
TWI59G0504 Tripterygium wilfordii HOM05D006057 ORTHO05D007224 1.2e-28 130.2 123 66.7
BraA10t45317Z Brassica rapa HOM05D006057 ORTHO05D007224 1.6e-28 129.8 120 60.8
Thhalv10015298m.g Eutrema salsugineum HOM05D006057 ORTHO05D007224 2.1e-28 129.4 122 59.0
Solyc03g118440.3 Solanum lycopersicum HOM05D006057 ORTHO05D007224 2.1e-28 129.4 126 58.7
C09p73700 Brassica napus HOM05D006057 ORTHO05D007224 2.7e-28 129.0 121 61.2
BolC9t60100H Brassica oleracea HOM05D006057 ORTHO05D007224 2.7e-28 129.0 121 61.2
PGSC0003DMG400014183 Solanum tuberosum HOM05D006057 ORTHO05D007224 4.7e-28 128.3 126 57.9
Aa31LG1G21980 Aethionema arabicum HOM05D006057 ORTHO05D007224 6.1e-28 127.9 123 58.5
SHI19776 Sapria himalayana HOM05D006057 ORTHO05D007224 8.0e-28 127.5 109 61.5
TPR.G3076 Trifolium pratense HOM05D006057 ORTHO05D007224 8.0e-28 127.5 95 75.8
BcaC06g32028 Brassica carinata HOM05D006057 ORTHO05D007224 1.4e-27 126.7 124 59.7
Migut.L00999 Erythranthe guttata HOM05D006057 ORTHO05D007224 1.4e-27 126.7 96 66.7
Migut.L01023 Erythranthe guttata HOM05D006057 ORTHO05D007224 1.4e-27 126.7 116 60.3
CANSAT25G1403 Cannabis sativa HOM05D006057 ORTHO05D007224 1.8e-27 126.3 120 60.0
Peaxi162Scf00314g00430 Petunia axillaris HOM05D006057 ORTHO05D007224 2.3e-27 125.9 129 55.8
C02p00760 Brassica napus HOM05D006057 ORTHO05D007224 3.0e-27 125.6 123 58.5
BolC2t06074H Brassica oleracea HOM05D006057 ORTHO05D007224 3.0e-27 125.6 123 58.5
ClCG10G013240 Citrullus lanatus HOM05D006057 ORTHO05D007224 3.0e-27 125.6 127 57.5
Migut.L00831 Erythranthe guttata HOM05D006057 ORTHO05D007224 3.9e-27 125.2 94 66.0
Gohir.A07G132650 Gossypium hirsutum HOM05D006057 ORTHO05D007224 3.9e-27 125.2 97 66.0
Nitab4.5_0002450g0080 Nicotiana tabacum HOM05D006057 ORTHO05D007224 5.2e-27 124.8 126 56.3
ECA238G2998 Erigeron canadensis HOM05D006057 ORTHO05D007224 2.6e-26 122.5 131 55.7
Nitab4.5_0002046g0150 Nicotiana tabacum HOM05D006057 ORTHO05D007224 4.4e-26 121.7 126 55.6
BcaNung05509 Brassica carinata HOM05D006057 ORTHO05D007224 5.7e-26 121.3 84 73.8
MELO3C026900.2 Cucumis melo HOM05D006057 ORTHO05D007224 5.7e-26 121.3 116 59.5
CsaV3_3G043390 Cucumis sativus L. HOM05D006057 ORTHO05D007224 9.7e-26 120.6 116 58.6
HanXRQChr07g0194641 Helianthus annuus HOM05D006057 ORTHO05D007224 9.7e-26 120.6 124 57.3
Sed0018142 Sechium edule HOM05D006057 ORTHO05D007224 9.7e-26 120.6 126 57.1
PSO339G1810 Papaver somniferum HOM05D006057 ORTHO05D007224 3.7e-25 118.6 119 58.0
CDE01G0754 Ceratophyllum demersum HOM05D006057 ORTHO05D007224 6.3e-25 117.9 125 52.8
Oeu048368.1 Olea europaea HOM05D006057 ORTHO05D007224 6.3e-25 117.9 119 58.0
SGA_v2.0_scaffold38G15005 Striga asiatica HOM05D006057 ORTHO05D007224 1.1e-24 117.1 127 56.7
Nitab4.5_0001841g0090 Nicotiana tabacum HOM05D006057 ORTHO05D007224 1.4e-24 116.7 132 54.5
SGA_v2.0_scaffold36G14563 Striga asiatica HOM05D006057 ORTHO05D007224 1.4e-24 116.7 127 55.9
Lsat_1_v5_gn_2_108401 Lactuca sativa HOM05D006057 ORTHO05D007224 2.4e-24 115.9 117 59.0
PSO170G4276 Papaver somniferum HOM05D006057 ORTHO05D007224 2.4e-24 115.9 122 54.9
DCAR_012291 Daucus carota HOM05D006057 ORTHO05D007224 3.1e-24 115.5 129 53.5
DCAR_012292 Daucus carota HOM05D006057 ORTHO05D007224 3.1e-24 115.5 129 52.7
CAN.G843.33 Capsicum annuum HOM05D006057 ORTHO05D007224 7.0e-24 114.4 124 54.0
Aqoxy5G02874 Aquilegia oxysepala HOM05D006057 ORTHO05D007224 9.1e-24 114.0 133 54.9
PSO081G0045 Papaver somniferum HOM05D006057 ORTHO05D007224 1.6e-23 113.2 122 55.7
Nitab4.5_0010904g0040 Nicotiana tabacum HOM05D006057 ORTHO05D007224 2.0e-23 112.8 126 54.0
AUR62000136 Chenopodium quinoa HOM05D006057 ORTHO05D007224 2.6e-23 112.5 108 53.7
Actinidia21332 Actinidia chinensis HOM05D006057 ORTHO05D007224 5.9e-23 111.3 128 53.1
Ah.04g162100 Amaranthus hybridus HOM05D006057 ORTHO05D007224 1.7e-22 109.8 118 52.5
EL10Ac4g10232 Beta vulgaris HOM05D006057 ORTHO05D007224 1.7e-22 109.8 90 60.0
Ah.06g194050 Amaranthus hybridus HOM05D006057 ORTHO05D007224 2.2e-22 109.4 132 50.8
Sc09g0000780 Simmondsia chinensis HOM05D006057 ORTHO05D007224 3.8e-22 108.6 125 48.8
Potri.002G184600 Populus trichocarpa HOM05D006057 ORTHO05D007224 5.0e-22 108.2 105 60.0
Hund22023 Selenicereus undatus HOM05D006057 ORTHO05D007224 2.5e-21 105.9 117 48.7
Cc08_g05070 Coffea canephora HOM05D006057 ORTHO05D007224 4.2e-21 105.1 106 58.5
unitig_26.g10007 Utricularia gibba HOM05D006057 ORTHO05D007224 9.4e-21 104.0 121 48.8
AUR62019316 Chenopodium quinoa HOM05D006057 ORTHO05D007224 2.1e-20 102.8 119 47.9
ATR0019G040 Amborella trichopoda HOM05D006057 ORTHO05D007224 3.6e-20 102.1 103 53.4
HPP92_026861 Vanilla planifolia HOM05D006057 ORTHO05D007224 4.0e-19 98.6 128 46.9
CiPaw.07G127700 Carya illinoinensis HOM05D006057 ORTHO05D007224 1.2e-18 97.1 117 51.3
SEGI_31615 Sequoiadendron giganteum HOM05D006057 ORTHO05D007224 3.4e-18 95.5 125 44.8
CDE12G0816 Ceratophyllum demersum HOM05D006057 ORTHO05D007224 1.1e-16 90.5 73 63.0
Zm00001eb000680 Zea mays HOM05D006057 ORTHO05D007224 2.4e-16 89.4 116 44.8
BcaNung05508 Brassica carinata HOM05D006057 ORTHO05D007224 4.1e-16 88.6 111 47.7
Os03g0108700 Oryza sativa ssp. japonica HOM05D006057 ORTHO05D007224 9.1e-16 87.4 88 51.1
Gorai.001G149000 Gossypium raimondii HOM05D006057 ORTHO05D007224 1.2e-15 87.0 63 69.8
Gohir.D07G136950 Gossypium hirsutum HOM05D006057 ORTHO05D007224 1.7e-14 83.2 63 69.8
SMO361G0765 Selaginella moellendorffii HOM05D006057 ORTHO05D007224 8.5e-14 80.9 83 51.8
TPR.G2637 Trifolium pratense HOM05D006057 ORTHO05D007224 1.2e-12 77.0 100 53.0
Dinv05504 Davidia involucrata HOM05D006057 ORTHO05D007224 1.8e-11 73.2 80 56.2
Pp3c25_8550 Physcomitrium patens HOM05D006057 ORTHO05D007224 9.1e-08 60.8 127 33.1
Mapoly0076s0084 Marchantia polymorpha HOM05D006057 ORTHO05D007224 1.3e-06 57.0 114 31.6
CBR_g39249 Chara braunii HOM05D006057 ORTHO05D007224 1.7e-06 56.6 82 35.4
Ah.15g097910 Amaranthus hybridus HOM05D012832 ORTHO05D019522 2.3e-06 56.2 38 63.2
Ah.15g098350 Amaranthus hybridus HOM05D012832 ORTHO05D019522 2.3e-06 56.2 38 63.2


User provided reference genes

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