Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0024591 Lotus japonicus HOM05D006544 ORTHO05D008757 1.2e-58 229.6 109 100.0
Lj5g0006333 Lotus japonicus HOM05D006544 ORTHO05D008757 3.0e-46 188.3 94 93.6
Dinv37314 Davidia involucrata HOM05D006544 ORTHO05D008757 2.8e-44 181.8 94 88.3
Medtr1g063350 Medicago truncatula HOM05D006544 ORTHO05D008757 3.7e-44 181.4 94 88.3
Cfa017605 Carpinus fangiana HOM05D006544 ORTHO05D008757 4.8e-44 181.0 94 88.3
Ca_11495_v3 Cicer arietinum L. HOM05D006544 ORTHO05D008757 4.8e-44 181.0 94 88.3
MBI18_g04983_MAGBIO Magnolia biondii HOM05D006544 ORTHO05D008757 4.8e-44 181.0 94 88.3
Lalb_Chr06g0171711 Lupinus albus HOM05D006544 ORTHO05D008757 8.2e-44 180.3 94 88.3
Oeu016983.1 Olea europaea HOM05D006544 ORTHO05D008757 8.2e-44 180.3 94 87.2
Prupe.6G232400 Prunus persica HOM05D006544 ORTHO05D008757 1.1e-43 179.9 91 90.1
VMungo0720G1694 Vigna mungo HOM05D006544 ORTHO05D008757 1.1e-43 179.9 94 87.2
GSVIVG01025731001 Vitis vinifera HOM05D006544 ORTHO05D008757 1.1e-43 179.9 94 88.3
Ciclev10012670m.g Citrus clementina HOM05D006544 ORTHO05D008757 1.4e-43 179.5 94 87.2
COL.COLO4_26969 Corchorus olitorius HOM05D006544 ORTHO05D008757 1.4e-43 179.5 95 84.2
Gohir.A09G147100 Gossypium hirsutum HOM05D006544 ORTHO05D008757 1.4e-43 179.5 94 87.2
Manes.09G066600 Manihot esculenta HOM05D006544 ORTHO05D008757 1.4e-43 179.5 94 87.2
QL07p043583 Quercus lobata HOM05D006544 ORTHO05D008757 1.4e-43 179.5 94 88.3
Psat6g072960 Pisum sativum HOM05D006544 ORTHO05D008757 1.8e-43 179.1 94 86.2
Thecc.05G065700 Theobroma cacao HOM05D006544 ORTHO05D008757 1.8e-43 179.1 94 87.2
CiPaw.09G172700 Carya illinoinensis HOM05D006544 ORTHO05D008757 2.4e-43 178.7 94 87.2
Duzib093G0756 Durio zibethinus HOM05D006544 ORTHO05D008757 2.4e-43 178.7 94 86.2
Eucgr.A01683 Eucalyptus grandis HOM05D006544 ORTHO05D008757 2.4e-43 178.7 94 87.2
Actinidia28904 Actinidia chinensis HOM05D006544 ORTHO05D008757 3.1e-43 178.3 94 86.2
Nn2g11585 Nelumbo nucifera HOM05D006544 ORTHO05D008757 3.1e-43 178.3 94 85.1
Cc06_g04210 Coffea canephora HOM05D006544 ORTHO05D008757 4.1e-43 177.9 94 85.1
FAN05G5519 Fragaria x ananassa HOM05D006544 ORTHO05D008757 4.1e-43 177.9 90 90.0
FAN09G3810 Fragaria x ananassa HOM05D006544 ORTHO05D008757 4.1e-43 177.9 90 90.0
Lj2A122G33 Lonicera japonica HOM05D006544 ORTHO05D008757 4.1e-43 177.9 94 87.2
RcHm_v2.0_Chr3g0470171 Rosa chinensis HOM05D006544 ORTHO05D008757 4.1e-43 177.9 90 90.0
AUR62040358 Chenopodium quinoa HOM05D006544 ORTHO05D008757 5.3e-43 177.6 94 85.1
FvH4_6g16320 Fragaria vesca HOM05D006544 ORTHO05D008757 5.3e-43 177.6 90 88.9
FAN14G3080 Fragaria x ananassa HOM05D006544 ORTHO05D008757 5.3e-43 177.6 90 88.9
Nitab4.5_0010279g0020 Nicotiana tabacum HOM05D006544 ORTHO05D008757 5.3e-43 177.6 94 86.2
TAR636G3123 Trochodendron aralioides HOM05D006544 ORTHO05D008757 5.3e-43 177.6 94 85.1
arahy.Tifrunner.gnm1.ann1.4P9CL0 Arachis hypogaea HOM05D006544 ORTHO05D008757 7.0e-43 177.2 94 85.1
arahy.Tifrunner.gnm1.ann1.8Z8BZM Arachis hypogaea HOM05D006544 ORTHO05D008757 7.0e-43 177.2 94 85.1
CANSAT80G1747 Cannabis sativa HOM05D006544 ORTHO05D008757 7.0e-43 177.2 94 85.1
Cpa.g.sc54.75 Carica papaya HOM05D006544 ORTHO05D008757 7.0e-43 177.2 91 87.9
Gohir.D09G142700 Gossypium hirsutum HOM05D006544 ORTHO05D008757 7.0e-43 177.2 94 85.1
Gorai.006G164200 Gossypium raimondii HOM05D006544 ORTHO05D008757 7.0e-43 177.2 94 85.1
Sabra16G0097900 Salix brachista HOM05D006544 ORTHO05D008757 7.0e-43 177.2 94 85.1
TPR.G11258 Trifolium pratense HOM05D006544 ORTHO05D008757 7.0e-43 177.2 94 85.1
Aqoxy2G01774 Aquilegia oxysepala HOM05D006544 ORTHO05D008757 9.1e-43 176.8 94 87.2
Sc02g0001640 Simmondsia chinensis HOM05D006544 ORTHO05D008757 9.1e-43 176.8 94 85.1
Solyc10g084040.2 Solanum lycopersicum HOM05D006544 ORTHO05D008757 9.1e-43 176.8 94 86.2
Sopen10g033470 Solanum pennellii HOM05D006544 ORTHO05D008757 9.1e-43 176.8 94 86.2
TWI74G1602 Tripterygium wilfordii HOM05D006544 ORTHO05D008757 9.1e-43 176.8 94 86.2
EL10Ac7g16625 Beta vulgaris HOM05D006544 ORTHO05D008757 1.6e-42 176.0 94 84.0
ECA233G4064 Erigeron canadensis HOM05D006544 ORTHO05D008757 1.6e-42 176.0 94 85.1
HanXRQChr13g0401051 Helianthus annuus HOM05D006544 ORTHO05D008757 1.6e-42 176.0 94 85.1
Phvul.007G219800 Phaseolus vulgaris HOM05D006544 ORTHO05D008757 1.6e-42 176.0 94 85.1
Potri.016G092300 Populus trichocarpa HOM05D006544 ORTHO05D008757 1.6e-42 176.0 94 84.0
CAN.G1169.17 Capsicum annuum HOM05D006544 ORTHO05D008757 2.6e-42 175.3 94 85.1
PSO339G0933 Papaver somniferum HOM05D006544 ORTHO05D008757 2.6e-42 175.3 94 84.0
PSO801G0526 Papaver somniferum HOM05D006544 ORTHO05D008757 2.6e-42 175.3 94 84.0
PGR004G0128 Punica granatum HOM05D006544 ORTHO05D008757 2.6e-42 175.3 94 84.0
Rhsim03G0092100 Rhododendron simsii HOM05D006544 ORTHO05D008757 2.6e-42 175.3 96 83.3
SalBow5G2848 Salvia bowleyana HOM05D006544 ORTHO05D008757 2.6e-42 175.3 90 85.6
AL8G27480 Arabidopsis lyrata HOM05D006544 ORTHO05D008757 3.5e-42 174.9 99 80.8
AT5G52970 Arabidopsis thaliana HOM05D006544 ORTHO05D008757 3.5e-42 174.9 99 80.8
Ah.15g092510 Amaranthus hybridus HOM05D006544 ORTHO05D008757 4.5e-42 174.5 94 84.0
Carub.0008s1316 Capsella rubella HOM05D006544 ORTHO05D008757 4.5e-42 174.5 99 80.8
Migut.L01701 Erythranthe guttata HOM05D006544 ORTHO05D008757 4.5e-42 174.5 94 83.0
Glyma.10G056700 Glycine max HOM05D006544 ORTHO05D008757 4.5e-42 174.5 94 83.0
MD12G1113500 Malus domestica HOM05D006544 ORTHO05D008757 4.5e-42 174.5 90 87.8
PGSC0003DMG400010472 Solanum tuberosum HOM05D006544 ORTHO05D008757 4.5e-42 174.5 94 84.0
vmacro07290 Vaccinium macrocarpon HOM05D006544 ORTHO05D008757 4.5e-42 174.5 94 85.1
DCAR_020819 Daucus carota HOM05D006544 ORTHO05D008757 5.9e-42 174.1 94 84.0
Thhalv10014610m.g Eutrema salsugineum HOM05D006544 ORTHO05D008757 5.9e-42 174.1 99 78.8
Lsat_1_v5_gn_6_25121 Lactuca sativa HOM05D006544 ORTHO05D008757 7.7e-42 173.7 94 84.0
ClCG04G009280 Citrullus lanatus HOM05D006544 ORTHO05D008757 1.0e-41 173.3 94 86.2
Sed0018427 Sechium edule HOM05D006544 ORTHO05D008757 1.0e-41 173.3 94 87.2
MELO3C024463.2 Cucumis melo HOM05D006544 ORTHO05D008757 1.3e-41 172.9 90 88.9
Nitab4.5_0000063g0030 Nicotiana tabacum HOM05D006544 ORTHO05D008757 1.3e-41 172.9 94 84.0
Sp6g39380 Schrenkiella parvula HOM05D006544 ORTHO05D008757 1.3e-41 172.9 99 79.8
Aa31LG1G21780 Aethionema arabicum HOM05D006544 ORTHO05D008757 1.7e-41 172.6 94 83.0
THA.LOC104816347 Tarenaya hassleriana HOM05D006544 ORTHO05D008757 1.7e-41 172.6 94 80.9
CsaV3_6G039870 Cucumis sativus L. HOM05D006544 ORTHO05D008757 2.2e-41 172.2 90 88.9
SEGI_20985 Sequoiadendron giganteum HOM05D006544 ORTHO05D008757 2.2e-41 172.2 96 79.2
CARHR265950 Cardamine hirsuta HOM05D006544 ORTHO05D008757 2.9e-41 171.8 99 78.8
SGA_v2.0_scaffold224G42946 Striga asiatica HOM05D006544 ORTHO05D008757 2.9e-41 171.8 94 81.9
BcaB05g21832 Brassica carinata HOM05D006544 ORTHO05D008757 5.0e-41 171.0 94 83.0
BcaC03g13011 Brassica carinata HOM05D006544 ORTHO05D008757 5.0e-41 171.0 94 81.9
BraA02t04758Z Brassica rapa HOM05D006544 ORTHO05D008757 5.0e-41 171.0 94 81.9
ATR1093G019 Amborella trichopoda HOM05D006544 ORTHO05D008757 6.5e-41 170.6 94 79.8
SEGI_38453 Sequoiadendron giganteum HOM05D006544 ORTHO05D008757 8.5e-41 170.2 94 79.8
AUR62042496 Chenopodium quinoa HOM05D006544 ORTHO05D008757 1.1e-40 169.9 103 77.7
Os07g0534000 Oryza sativa ssp. japonica HOM05D006544 ORTHO05D008757 5.5e-40 167.5 95 77.9
C02p01030 Brassica napus HOM05D006544 ORTHO05D008757 1.2e-39 166.4 95 81.1
BolC2t06093H Brassica oleracea HOM05D006544 ORTHO05D008757 1.2e-39 166.4 95 81.1
HPP92_009890 Vanilla planifolia HOM05D006544 ORTHO05D008757 1.2e-39 166.4 94 80.9
unitig_578.g16041 Utricularia gibba HOM05D006544 ORTHO05D008757 2.7e-39 165.2 94 75.5
MSTRG.10320 Avicennia marina HOM05D006544 ORTHO05D008757 4.7e-39 164.5 92 76.1
Zm00001eb088350 Zea mays HOM05D006544 ORTHO05D008757 8.0e-39 163.7 94 75.5
CDE09G0170 Ceratophyllum demersum HOM05D006544 ORTHO05D008757 1.4e-38 162.9 94 75.5
AagrBONN_evm.TU.Sc2ySwM_228.4577 Anthoceros agrestis HOM05D006544 ORTHO05D008757 1.8e-38 162.5 94 76.6
Peaxi162Scf00311g00059 Petunia axillaris HOM05D006544 ORTHO05D008757 1.8e-38 162.5 120 67.5
AagrBONN_evm.TU.Sc2ySwM_344.816 Anthoceros agrestis HOM05D006544 ORTHO05D008757 2.3e-38 162.2 94 76.6
Cpa.g.sc4277.1 Carica papaya HOM05D006544 ORTHO05D008757 1.5e-37 159.5 93 79.6
Cpa.g.sc54.73 Carica papaya HOM05D006544 ORTHO05D008757 1.5e-37 159.5 93 79.6
Mapoly0064s0090 Marchantia polymorpha HOM05D006544 ORTHO05D008757 2.6e-37 158.7 94 72.3
SMO118G0079 Selaginella moellendorffii HOM05D006544 ORTHO05D008757 5.7e-37 157.5 94 74.5
Cre15.g636050 Chlamydomonas reinhardtii HOM05D006544 ORTHO05D008757 1.3e-36 156.4 94 69.1
CBR_g11899 Chara braunii HOM05D006544 ORTHO05D008757 5.9e-34 147.5 96 66.7
Pp3c13_11800 Physcomitrium patens HOM05D006544 ORTHO05D008757 1.3e-33 146.4 87 71.3
MCO09G250 Micromonas commoda HOM05D006544 ORTHO05D008757 3.6e-31 138.3 92 65.2
PRCOL_00002491 Prasinoderma coloniale HOM05D006544 ORTHO05D008757 1.4e-30 136.3 88 67.0
CSS0000889 Camellia sinensis var. sinensis HOM05D006544 ORTHO05D008757 2.0e-21 105.9 57 82.5
SalBow5G0971 Salvia bowleyana HOM05D008540 ORTHO05D009454 7.3e-16 87.4 47 83.0
CBR_g20266 Chara braunii HOM05D006544 ORTHO05D021234 6.4e-12 74.3 90 42.2
HPP92_009894 Vanilla planifolia HOM05D006544 ORTHO05D008757 6.4e-12 74.3 40 80.0
AagrBONN_evm.TU.Sc2ySwM_368.258 Anthoceros agrestis HOM05D006544 ORTHO05D021234 4.1e-11 71.6 91 36.3
Medtr5g037320 Medicago truncatula HOM05D006544 ORTHO05D008757 4.6e-10 68.2 37 86.5
SEGI_36386 Sequoiadendron giganteum HOM05D006544 ORTHO05D021234 2.3e-09 65.9 87 37.9
Hund20313 Selenicereus undatus HOM05D006544 ORTHO05D008757 6.2e-07 57.8 33 78.8


User provided reference genes

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