Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 2.2e-260 901.7 456 100.0
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 7.5e-256 886.7 456 98.0
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 3.5e-221 771.5 460 85.2
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 7.8e-221 770.4 457 84.9
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 2.3e-220 768.8 461 85.7
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 1.1e-219 766.5 462 84.4
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 4.4e-216 754.6 463 84.2
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 5.8e-216 754.2 462 84.8
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 3.2e-214 748.4 462 84.0
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 2.1e-213 745.7 460 82.8
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 9.2e-206 720.3 390 91.8
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 4.0e-201 704.9 460 78.0
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 1.1e-198 696.8 460 77.2
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 5.4e-198 694.5 388 89.7
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 4.6e-197 691.4 450 77.3
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 1.3e-196 689.9 454 78.0
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 2.3e-196 689.1 457 77.2
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 8.7e-196 687.2 416 81.5
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 1.1e-195 686.8 459 76.3
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 1.5e-195 686.4 453 76.4
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 1.6e-194 682.9 437 79.6
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 1.4e-193 679.9 457 77.2
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 2.4e-193 679.1 447 78.3
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 3.1e-193 678.7 450 76.2
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 3.1e-193 678.7 433 79.7
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 4.0e-193 678.3 428 80.1
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 1.2e-192 676.8 450 76.9
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 4.5e-192 674.9 463 75.4
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 7.6e-192 674.1 451 76.5
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 1.3e-191 673.3 467 73.9
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 2.2e-191 672.5 450 76.0
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 2.9e-191 672.2 450 76.0
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 1.1e-190 670.2 451 74.7
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.1e-190 670.2 450 75.6
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 1.4e-190 669.8 452 75.0
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 1.9e-190 669.5 437 78.9
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 1.9e-190 669.5 441 78.0
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 1.9e-190 669.5 457 75.3
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 2.4e-190 669.1 451 75.8
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 2.4e-190 669.1 449 75.3
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 2.4e-190 669.1 465 74.6
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 3.2e-190 668.7 457 75.1
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 4.2e-190 668.3 450 75.3
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 7.1e-190 667.5 450 75.1
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 7.1e-190 667.5 407 80.8
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 9.3e-190 667.2 451 75.2
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 1.2e-189 666.8 450 74.7
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 1.2e-189 666.8 450 74.9
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 1.2e-189 666.8 452 75.2
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 1.6e-189 666.4 393 83.7
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 2.1e-189 666.0 450 74.7
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 2.1e-189 666.0 465 73.5
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 2.7e-189 665.6 451 75.4
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 3.5e-189 665.2 454 76.0
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 6.0e-189 664.5 456 74.1
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 6.0e-189 664.5 452 74.6
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 6.0e-189 664.5 416 79.6
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 1.0e-188 663.7 451 74.9
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 1.3e-188 663.3 457 74.4
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 1.8e-188 662.9 405 81.7
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 1.8e-188 662.9 422 78.4
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 2.3e-188 662.5 452 74.6
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 5.1e-188 661.4 451 74.9
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 8.7e-188 660.6 413 79.2
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 1.1e-187 660.2 433 76.9
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 1.1e-187 660.2 446 75.3
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 1.9e-187 659.4 448 74.6
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 2.5e-187 659.1 452 73.9
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 7.4e-187 657.5 446 75.1
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 6.2e-186 654.4 385 83.9
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 8.1e-186 654.1 382 84.8
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 1.1e-185 653.7 383 84.6
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 1.4e-185 653.3 452 74.3
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 2.4e-185 652.5 391 81.8
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 2.4e-185 652.5 452 73.0
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 4.0e-185 651.7 412 78.4
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 1.2e-184 650.2 385 82.6
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 1.2e-184 650.2 453 73.7
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 1.5e-184 649.8 409 78.2
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 2.0e-184 649.4 394 79.9
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 3.4e-184 648.7 382 82.5
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 4.5e-184 648.3 390 82.1
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 1.3e-183 646.7 378 83.1
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 1.7e-183 646.4 415 76.6
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 2.2e-183 646.0 456 72.4
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 3.8e-183 645.2 419 75.7
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 4.9e-183 644.8 412 77.7
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 8.4e-183 644.0 431 75.2
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 1.4e-182 643.3 443 74.5
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.9e-182 642.9 396 79.0
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 1.9e-182 642.9 417 79.4
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 2.4e-182 642.5 380 82.4
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 5.5e-182 641.3 388 82.0
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 1.6e-181 639.8 442 73.3
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 6.7e-180 634.4 431 74.2
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 1.5e-179 633.3 385 80.8
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 1.5e-179 633.3 419 74.9
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 1.3e-178 630.2 410 76.8
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 3.7e-178 628.6 403 76.9
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 3.7e-178 628.6 459 70.4
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 1.8e-177 626.3 520 63.8
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 1.1e-174 617.1 471 68.4
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 2.3e-172 609.4 414 73.4
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 4.8e-170 601.7 412 72.1
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 7.9e-165 584.3 413 70.2
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 1.8e-156 556.6 438 68.3
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.4e-153 547.0 357 73.9
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 1.0e-151 540.8 413 66.6
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 6.7e-148 528.1 451 63.6
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 6.7e-148 528.1 409 66.5
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 7.4e-147 524.6 453 63.6
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 2.4e-145 519.6 351 73.2
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 1.2e-144 517.3 352 71.6
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 1.0e-143 514.2 438 63.9
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 2.8e-138 496.1 344 74.4
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 3.1e-137 492.7 417 61.2
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.2e-136 490.7 375 64.3
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 1.6e-133 480.3 359 67.4
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 5.2e-132 475.3 276 83.7
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 8.8e-132 474.6 379 62.0
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 4.8e-130 468.8 276 81.9
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 2.4e-121 439.9 268 79.5
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 5.9e-120 435.3 289 73.0
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 7.3e-118 428.3 438 55.0
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 8.3e-114 414.8 319 66.5
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 7.0e-113 411.8 327 66.4
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 8.6e-111 404.8 252 78.2
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 8.0e-109 398.3 280 70.0
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.2e-99 367.9 321 63.9
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 6.4e-98 362.1 210 86.2
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 8.3e-98 361.7 355 53.0
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 8.3e-98 361.7 322 63.7
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 3.3e-94 349.7 331 52.9
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 1.1e-92 344.7 218 79.4
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 6.6e-87 325.5 201 75.1
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 9.6e-86 321.6 226 73.9
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 1.3e-79 301.2 211 70.1
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 3.4e-75 286.6 174 80.5
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 6.4e-66 255.8 180 70.6
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 6.7e-63 245.7 180 68.9
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 2.1e-61 240.7 343 41.4
Atru.chr2.2696 Acer truncatum HOM05D004538 ORTHO05D006068 1.2e-59 235.0 135 87.4
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 7.6e-59 232.3 124 85.5
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 7.9e-56 222.2 291 41.9
SHI05856 Sapria himalayana HOM05D004538 ORTHO05D006068 1.8e-47 194.5 134 73.1
Duzib268G1762 Durio zibethinus HOM05D004538 ORTHO05D006068 2.6e-38 164.1 112 78.6
Atru.chr2.2627 Acer truncatum HOM05D000397 ORTHO05D002023 6.3e-37 159.5 111 77.5
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.8e-36 157.9 84 86.9
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 6.5e-34 149.4 112 69.6
MSTRG.9065 Avicennia marina HOM05D004538 ORTHO05D006068 6.1e-32 142.9 93 75.3
MSTRG.9077 Avicennia marina HOM05D004538 ORTHO05D006068 4.5e-27 126.7 77 83.1
QL10p039376 Quercus lobata HOM05D004538 ORTHO05D006068 1.8e-23 114.8 77 74.0
ATR0499G006 Amborella trichopoda HOM05D004538 ORTHO05D066479 5.7e-22 109.8 123 54.5
Atru.chr2.2679 Acer truncatum HOM05D004538 ORTHO05D052265 2.2e-21 107.8 65 78.5
MD02G1271500 Malus domestica HOM05D004538 ORTHO05D006068 1.5e-17 95.1 59 84.7
RcHm_v2.0_Chr6g0267421 Rosa chinensis HOM05D004538 ORTHO05D006068 7.2e-17 92.8 59 84.7
Cc02_g29820 Coffea canephora HOM05D004538 ORTHO05D006068 1.4e-15 88.6 68 66.2
ATR0499G019 Amborella trichopoda HOM05D004538 ORTHO05D006068 2.3e-15 87.8 58 63.8
QL02p081848 Quercus lobata HOM05D007814 ORTHO05D009902 5.2e-15 86.7 50 80.0
Atru.chr2.2641 Acer truncatum HOM05D004538 ORTHO05D052874 6.6e-10 69.7 44 75.0
Oeu026585.1 Olea europaea HOM05D004538 ORTHO05D289065 6.8e-07 59.7 220 25.9


User provided reference genes

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