Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0024082 Lotus japonicus HOM05D006710 ORTHO05D008353 5.7e-130 467.6 242 100.0
Glyma.10G157000 Glycine max HOM05D006710 ORTHO05D008353 6.8e-91 337.8 245 72.2
VMungo0720G2835 Vigna mungo HOM05D006710 ORTHO05D008353 6.8e-91 337.8 244 71.7
Phvul.007G182300 Phaseolus vulgaris HOM05D006710 ORTHO05D008353 2.9e-89 332.4 244 70.5
Ca_10089_v3 Cicer arietinum L. HOM05D006710 ORTHO05D008353 9.6e-85 317.4 248 68.1
Lalb_Chr02g0148381 Lupinus albus HOM05D006710 ORTHO05D008353 1.8e-83 313.2 244 70.1
arahy.Tifrunner.gnm1.ann1.KZLY5F Arachis hypogaea HOM05D006710 ORTHO05D008353 2.4e-83 312.8 242 69.4
arahy.Tifrunner.gnm1.ann1.ACRB0G Arachis hypogaea HOM05D006710 ORTHO05D008353 5.3e-83 311.6 242 69.0
Lalb_Chr15g0077091 Lupinus albus HOM05D006710 ORTHO05D008353 1.1e-80 303.9 232 71.1
Psat6g148920 Pisum sativum HOM05D006710 ORTHO05D008353 1.5e-77 293.5 248 62.9
QL03p004347 Quercus lobata HOM05D006710 ORTHO05D008353 1.3e-76 290.4 247 65.2
Cpa.g.sc48.8 Carica papaya HOM05D006710 ORTHO05D008353 1.6e-76 290.0 241 63.5
Manes.09G163400 Manihot esculenta HOM05D006710 ORTHO05D008353 2.1e-76 289.7 251 64.9
CSS0006596 Camellia sinensis var. sinensis HOM05D006710 ORTHO05D008353 4.0e-75 285.4 219 67.1
Sabra13G0027300 Salix brachista HOM05D006710 ORTHO05D008353 9.0e-75 284.3 233 64.8
AUR62005111 Chenopodium quinoa HOM05D006710 ORTHO05D008353 1.2e-74 283.9 251 61.8
CSS0018519 Camellia sinensis var. sinensis HOM05D006710 ORTHO05D008353 1.5e-74 283.5 219 66.7
AUR62000864 Chenopodium quinoa HOM05D006710 ORTHO05D008353 2.0e-74 283.1 230 63.9
Actinidia23607 Actinidia chinensis HOM05D006710 ORTHO05D008353 2.6e-74 282.7 232 64.2
CiPaw.08G166900 Carya illinoinensis HOM05D006710 ORTHO05D008353 2.6e-74 282.7 251 62.2
Dinv40255 Davidia involucrata HOM05D006710 ORTHO05D008353 4.5e-74 282.0 252 60.7
MSTRG.20477 Avicennia marina HOM05D006710 ORTHO05D008353 7.6e-74 281.2 238 61.8
Gohir.D13G178900 Gossypium hirsutum HOM05D006710 ORTHO05D008353 9.9e-74 280.8 247 61.5
Potri.013G026500 Populus trichocarpa HOM05D006710 ORTHO05D008353 2.9e-73 279.3 235 62.6
CsaV3_2G004900 Cucumis sativus L. HOM05D006710 ORTHO05D008353 3.8e-73 278.9 251 59.0
Actinidia05724 Actinidia chinensis HOM05D006710 ORTHO05D008353 6.4e-73 278.1 232 64.2
Medtr1g082430 Medicago truncatula HOM05D006710 ORTHO05D008353 6.4e-73 278.1 254 61.4
Gorai.013G204100 Gossypium raimondii HOM05D006710 ORTHO05D008353 8.4e-73 277.7 247 60.7
Cfa006542 Carpinus fangiana HOM05D006710 ORTHO05D008353 2.4e-72 276.2 237 62.9
Haze_04239 Corylus avellana HOM05D006710 ORTHO05D008353 4.2e-72 275.4 237 62.4
Gohir.A13G173100 Gossypium hirsutum HOM05D006710 ORTHO05D008353 7.1e-72 274.6 247 60.7
TWI12G0766 Tripterygium wilfordii HOM05D006710 ORTHO05D008353 7.1e-72 274.6 233 63.9
RcHm_v2.0_Chr3g0454051 Rosa chinensis HOM05D006710 ORTHO05D008353 9.3e-72 274.2 252 59.5
TWI56G0551 Tripterygium wilfordii HOM05D006710 ORTHO05D008353 9.3e-72 274.2 248 60.1
FAN05G4089 Fragaria x ananassa HOM05D006710 ORTHO05D008353 1.2e-71 273.9 251 60.6
Atru.chr2.492 Acer truncatum HOM05D006710 ORTHO05D008353 3.5e-71 272.3 246 62.2
Duzib177G0772 Durio zibethinus HOM05D006710 ORTHO05D008353 3.5e-71 272.3 225 62.2
MD04G1209500 Malus domestica HOM05D006710 ORTHO05D008353 3.5e-71 272.3 251 59.8
PGR031G3544 Punica granatum HOM05D006710 ORTHO05D008353 1.0e-70 270.8 213 65.3
FAN14G5365 Fragaria x ananassa HOM05D006710 ORTHO05D008353 1.3e-70 270.4 267 57.7
Rhsim07G0179500 Rhododendron simsii HOM05D006710 ORTHO05D008353 1.3e-70 270.4 234 60.3
vmacro05032 Vaccinium macrocarpon HOM05D006710 ORTHO05D008353 1.8e-70 270.0 229 61.1
MD12G1224100 Malus domestica HOM05D006710 ORTHO05D008353 3.0e-70 269.2 254 59.1
EL10Ac4g09302 Beta vulgaris HOM05D006710 ORTHO05D008353 3.9e-70 268.9 253 57.7
Peaxi162Scf00071g00728 Petunia axillaris HOM05D006710 ORTHO05D008353 3.9e-70 268.9 236 61.9
Gohir.D11G272800 Gossypium hirsutum HOM05D006710 ORTHO05D008353 6.7e-70 268.1 243 61.3
Gorai.007G294100 Gossypium raimondii HOM05D006710 ORTHO05D008353 6.7e-70 268.1 243 61.3
Nitab4.5_0010747g0020 Nicotiana tabacum HOM05D006710 ORTHO05D008353 6.7e-70 268.1 241 58.9
Ciclev10002268m.g Citrus clementina HOM05D006710 ORTHO05D008353 1.5e-69 266.9 239 59.0
Nn4g26145 Nelumbo nucifera HOM05D006710 ORTHO05D008353 1.5e-69 266.9 238 61.3
Thecc.05G308800 Theobroma cacao HOM05D006710 ORTHO05D008353 1.5e-69 266.9 250 59.2
SalBow8G3090 Salvia bowleyana HOM05D006710 ORTHO05D008353 1.9e-69 266.5 238 59.7
Nitab4.5_0000424g0030 Nicotiana tabacum HOM05D006710 ORTHO05D008353 5.6e-69 265.0 236 60.2
MBI19_g27535_MAGBIO Magnolia biondii HOM05D006710 ORTHO05D008353 1.3e-68 263.8 227 61.2
PGSC0003DMG400026653 Solanum tuberosum HOM05D006710 ORTHO05D008353 1.6e-68 263.5 243 59.7
COL.COLO4_13519 Corchorus olitorius HOM05D000735 ORTHO05D000838 2.1e-68 263.1 232 62.5
Sed0009429 Sechium edule HOM05D006710 ORTHO05D008353 2.8e-68 262.7 262 55.3
Prupe.6G330500 Prunus persica HOM05D006710 ORTHO05D008353 8.1e-68 261.2 253 57.7
Solyc08g043180.3 Solanum lycopersicum HOM05D006710 ORTHO05D008353 1.1e-67 260.8 178 71.3
CARHR185990 Cardamine hirsuta HOM05D006710 ORTHO05D008353 1.4e-67 260.4 243 56.8
CDE08G1170 Ceratophyllum demersum HOM05D006710 ORTHO05D008353 2.4e-67 259.6 246 58.5
Eucgr.H04455 Eucalyptus grandis HOM05D006710 ORTHO05D008353 2.4e-67 259.6 211 62.6
CAN.G809.16 Capsicum annuum HOM05D006710 ORTHO05D008353 3.1e-67 259.2 240 59.6
Aqoxy2G03215 Aquilegia oxysepala HOM05D006710 ORTHO05D008353 5.3e-67 258.5 211 62.1
Sopen08g012960 Solanum pennellii HOM05D006710 ORTHO05D008353 5.3e-67 258.5 243 59.3
AT5G27390 Arabidopsis thaliana HOM05D006710 ORTHO05D008353 9.0e-67 257.7 243 56.4
CANSAT54G0344 Cannabis sativa HOM05D006710 ORTHO05D008353 9.0e-67 257.7 248 58.9
unitig_0.g2209 Utricularia gibba HOM05D006710 ORTHO05D008353 9.0e-67 257.7 210 61.0
ClCG02G016080 Citrullus lanatus HOM05D006710 ORTHO05D008353 1.5e-66 256.9 251 57.0
AL6G39620 Arabidopsis lyrata HOM05D006710 ORTHO05D008353 2.0e-66 256.5 243 56.8
Carub.0006s2515 Capsella rubella HOM05D006710 ORTHO05D008353 3.4e-66 255.8 243 56.0
FAN09G4503 Fragaria x ananassa HOM05D006710 ORTHO05D008353 5.8e-66 255.0 292 52.1
HanXRQChr09g0258761 Helianthus annuus HOM05D006710 ORTHO05D008353 5.8e-66 255.0 243 58.4
Lj9A681T40 Lonicera japonica HOM05D006710 ORTHO05D008353 5.8e-66 255.0 261 54.0
PSO170G1405 Papaver somniferum HOM05D006710 ORTHO05D008353 5.8e-66 255.0 252 54.8
THA.LOC104802809 Tarenaya hassleriana HOM05D006710 ORTHO05D008353 1.7e-65 253.4 252 56.0
PSO407G0185 Papaver somniferum HOM05D006710 ORTHO05D008353 2.2e-65 253.1 247 54.3
Thhalv10004765m.g Eutrema salsugineum HOM05D006710 ORTHO05D008353 2.9e-65 252.7 249 55.4
Ah.06g190140 Amaranthus hybridus HOM05D006710 ORTHO05D008353 3.8e-65 252.3 229 59.8
ECA232G0378 Erigeron canadensis HOM05D006710 ORTHO05D008353 4.9e-65 251.9 220 60.0
Migut.B01148 Erythranthe guttata HOM05D006710 ORTHO05D008353 8.4e-65 251.1 178 70.2
FAN14G4294 Fragaria x ananassa HOM05D006710 ORTHO05D008353 8.4e-65 251.1 254 57.9
Sp2g20620 Schrenkiella parvula HOM05D006710 ORTHO05D008353 1.6e-63 246.9 251 54.2
Os05g0401300 Oryza sativa ssp. japonica HOM05D006710 ORTHO05D008353 2.1e-63 246.5 182 66.5
BcaNung04366 Brassica carinata HOM05D006710 ORTHO05D008353 6.7e-62 241.5 252 53.6
ATR0626G338 Amborella trichopoda HOM05D006710 ORTHO05D008353 1.5e-61 240.4 215 60.0
BcaNung02465 Brassica carinata HOM05D006710 ORTHO05D008353 1.5e-61 240.4 250 54.0
Hund07043 Selenicereus undatus HOM05D006710 ORTHO05D008353 1.6e-60 236.9 252 53.6
Sc09g0003360 Simmondsia chinensis HOM05D006710 ORTHO05D006029 2.1e-60 236.5 162 67.9
HPP92_013667 Vanilla planifolia HOM05D006710 ORTHO05D008353 3.7e-60 235.7 211 59.2
Zm00001eb346790 Zea mays HOM05D006710 ORTHO05D008353 3.7e-60 235.7 182 62.6
SGA_v2.0_scaffold244G44356 Striga asiatica HOM05D006710 ORTHO05D008353 7.6e-58 228.0 218 55.5
Gohir.A11G262800 Gossypium hirsutum HOM05D006710 ORTHO05D008353 2.2e-57 226.5 214 58.4
A06p37590 Brassica napus HOM05D006710 ORTHO05D008353 8.4e-57 224.6 260 51.5
C07p40720 Brassica napus HOM05D006710 ORTHO05D008353 1.4e-56 223.8 262 51.5
BolC7t44600H Brassica oleracea HOM05D006710 ORTHO05D008353 1.4e-56 223.8 262 51.5
Aa31LG11G9170 Aethionema arabicum HOM05D006710 ORTHO05D008353 1.2e-55 220.7 279 49.1
TPR.G327 Trifolium pratense HOM05D006710 ORTHO05D008353 2.7e-55 219.5 188 62.8
SEGI_09082 Sequoiadendron giganteum HOM05D006710 ORTHO05D008353 6.1e-55 218.4 185 56.8
GSVIVG01000003001 Vitis vinifera HOM05D006710 ORTHO05D008353 3.0e-54 216.1 144 75.0
CDE02G4396 Ceratophyllum demersum HOM05D000137 ORTHO05D000503 1.3e-52 210.7 203 58.6
Lsat_1_v5_gn_8_116001 Lactuca sativa HOM05D006710 ORTHO05D008353 2.2e-52 209.9 216 52.3
TAR362G0522 Trochodendron aralioides HOM05D006710 ORTHO05D008353 9.0e-51 204.5 144 71.5
BraA06t26678Z Brassica rapa HOM05D006710 ORTHO05D008353 3.2e-48 196.1 239 50.2
MELO3C004308.2 Cucumis melo HOM05D006710 ORTHO05D008353 3.3e-45 186.0 176 59.1
Glyma.20G231700 Glycine max HOM05D006710 ORTHO05D008353 4.3e-45 185.7 123 72.4
AagrBONN_evm.TU.Sc2ySwM_368.548 Anthoceros agrestis HOM05D006710 ORTHO05D008353 3.1e-43 179.5 216 45.4
FAN05G4701 Fragaria x ananassa HOM05D006710 ORTHO05D008353 7.2e-40 168.3 239 47.3
Mapoly0057s0090 Marchantia polymorpha HOM05D006710 ORTHO05D008353 9.4e-40 167.9 173 46.8
Pp3c11_21800 Physcomitrium patens HOM05D006710 ORTHO05D008353 3.7e-36 156.0 228 39.0
FvH4_6g05310 Fragaria vesca HOM05D006710 ORTHO05D008353 3.1e-35 152.9 164 54.9
Cc02_g32640 Coffea canephora HOM05D006710 ORTHO05D008353 4.2e-32 142.5 95 72.6
SMO356G0400 Selaginella moellendorffii HOM05D006710 ORTHO05D008353 3.6e-31 139.4 213 40.8
Cc02_g32660 Coffea canephora HOM05D006710 ORTHO05D008353 2.0e-29 133.7 151 53.0
DCAR_022246 Daucus carota HOM05D006710 ORTHO05D008353 9.7e-29 131.3 155 49.7
FAN02G1407 Fragaria x ananassa HOM05D006710 ORTHO05D008353 7.7e-26 121.7 136 52.9
EL10Ac7g17500 Beta vulgaris HOM05D006710 ORTHO05D008353 5.5e-24 115.5 96 59.4
Thecc.05G311300 Theobroma cacao HOM05D000126 ORTHO05D008353 7.0e-19 98.6 68 70.6
MCO13G061 Micromonas commoda HOM05D006710 ORTHO05D008353 2.6e-13 80.1 132 32.6
CBR_g32459 Chara braunii HOM05D000019 ORTHO05D000353 1.8e-11 73.9 260 26.5
Cre13.g564050 Chlamydomonas reinhardtii HOM05D006710 ORTHO05D008353 2.8e-07 60.1 143 28.0
PRCOL_00002748 Prasinoderma coloniale HOM05D006710 ORTHO05D008353 6.1e-07 58.9 134 30.6


User provided reference genes

Program Settings