Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0023620 Lotus japonicus HOM05D041574 ORTHO05D236101 2.2e-171 605.5 302 100.0
Lj1g0009361 Lotus japonicus HOM05D041574 ORTHO05D236155 2.1e-161 572.4 303 95.7
Lj5g0013726 Lotus japonicus HOM05D041574 ORTHO05D236889 1.1e-119 433.7 259 88.0
arahy.Tifrunner.gnm1.ann1.WU5QTE Arachis hypogaea HOM05D006261 ORTHO05D007979 8.4e-14 82.0 72 56.9
TPR.G11138 Trifolium pratense HOM05D006261 ORTHO05D007979 1.1e-13 81.6 72 55.6
Lalb_Chr10g0095461 Lupinus albus HOM05D006261 ORTHO05D007979 1.9e-13 80.9 72 55.6
arahy.Tifrunner.gnm1.ann1.97F800 Arachis hypogaea HOM05D006261 ORTHO05D007979 2.5e-13 80.5 72 55.6
QL11p038259 Quercus lobata HOM05D006261 ORTHO05D007979 1.2e-12 78.2 72 55.6
Lj2g0017302 Lotus japonicus HOM05D006261 ORTHO05D007979 1.6e-12 77.8 72 55.6
Medtr1g034000 Medicago truncatula HOM05D006261 ORTHO05D007979 1.6e-12 77.8 72 54.2
Peaxi162Scf00684g00565 Petunia axillaris HOM05D006261 ORTHO05D007979 2.7e-12 77.0 72 51.4
Ca_12470_v3 Cicer arietinum L. HOM05D006261 ORTHO05D007979 3.5e-12 76.6 72 54.2
VMungo1215G1075 Vigna mungo HOM05D006261 ORTHO05D007979 3.5e-12 76.6 72 54.2
Hund06186 Selenicereus undatus HOM05D006261 ORTHO05D007979 4.6e-12 76.3 72 48.6
Psat6g096640 Pisum sativum HOM05D006261 ORTHO05D007979 6.1e-12 75.9 72 52.8
Potri.009G106100 Populus trichocarpa HOM05D006261 ORTHO05D007979 6.1e-12 75.9 72 48.6
Haze_01887 Corylus avellana HOM05D006261 ORTHO05D007979 1.0e-11 75.1 72 51.4
Aqoxy6G01433 Aquilegia oxysepala HOM05D006261 ORTHO05D007979 1.3e-11 74.7 72 50.0
CSS0020679 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 1.3e-11 74.7 85 49.4
Cfa005432 Carpinus fangiana HOM05D006261 ORTHO05D007979 2.3e-11 73.9 72 51.4
Dinv23589 Davidia involucrata HOM05D006261 ORTHO05D007979 2.3e-11 73.9 72 51.4
COL.COLO4_11716 Corchorus olitorius HOM05D006261 ORTHO05D007979 3.0e-11 73.6 72 50.0
EL10Ac9g21824 Beta vulgaris HOM05D006261 ORTHO05D007979 5.1e-11 72.8 75 48.0
CsaV3_7G008780 Cucumis sativus L. HOM05D006261 ORTHO05D007979 5.1e-11 72.8 72 50.0
Duzib052G0221 Durio zibethinus HOM05D006261 ORTHO05D007979 6.7e-11 72.4 72 50.0
Glyma.07G178400 Glycine max HOM05D006261 ORTHO05D007979 6.7e-11 72.4 72 48.6
Phvul.003G012500 Phaseolus vulgaris HOM05D006261 ORTHO05D007979 6.7e-11 72.4 73 54.8
TAR381G0774 Trochodendron aralioides HOM05D006261 ORTHO05D007979 6.7e-11 72.4 72 50.0
Lj9C360T7 Lonicera japonica HOM05D006261 ORTHO05D007979 8.7e-11 72.0 72 48.6
Sopen11g020360 Solanum pennellii HOM05D006261 ORTHO05D007979 8.7e-11 72.0 72 45.8
Cc02_g18510 Coffea canephora HOM05D006261 ORTHO05D007979 1.5e-10 71.2 72 45.8
PGSC0003DMG400022938 Solanum tuberosum HOM05D006261 ORTHO05D007979 1.5e-10 71.2 72 45.8
Ciclev10028211m.g Citrus clementina HOM05D006261 ORTHO05D007979 1.9e-10 70.9 72 47.2
Eucgr.I01173 Eucalyptus grandis HOM05D006261 ORTHO05D007979 1.9e-10 70.9 70 47.1
Actinidia17850 Actinidia chinensis HOM05D006261 ORTHO05D007979 2.5e-10 70.5 72 48.6
PGR142G4090 Punica granatum HOM05D006261 ORTHO05D007979 2.5e-10 70.5 72 45.8
CSS0049642 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 4.3e-10 69.7 88 45.5
Cpa.g.sc62.43 Carica papaya HOM05D006261 ORTHO05D007979 4.3e-10 69.7 72 47.2
Sc08g0000100 Simmondsia chinensis HOM05D006261 ORTHO05D007979 4.3e-10 69.7 75 45.3
TWI31G0850 Tripterygium wilfordii HOM05D006261 ORTHO05D007979 4.3e-10 69.7 72 47.2
Nitab4.5_0000736g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 5.7e-10 69.3 72 47.2
Rhsim05G0080700 Rhododendron simsii HOM05D006261 ORTHO05D007979 5.7e-10 69.3 83 43.4
Solyc11g044870.2 Solanum lycopersicum HOM05D006261 ORTHO05D007979 5.7e-10 69.3 72 45.8
vmacro19482 Vaccinium macrocarpon HOM05D006261 ORTHO05D007979 5.7e-10 69.3 70 48.6
Nitab4.5_0002141g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 7.4e-10 68.9 72 45.8
Sabra04G0095700 Salix brachista HOM05D006261 ORTHO05D007979 7.4e-10 68.9 72 41.7
FAN15G2665 Fragaria x ananassa HOM05D006261 ORTHO05D007979 9.7e-10 68.6 72 50.0
FAN20G2731 Fragaria x ananassa HOM05D006261 ORTHO05D007979 9.7e-10 68.6 72 50.0
Gohir.D01G006100 Gossypium hirsutum HOM05D006261 ORTHO05D007979 9.7e-10 68.6 72 45.8
PSO541G6069 Papaver somniferum HOM05D006261 ORTHO05D007979 9.7e-10 68.6 72 44.4
Gorai.002G007100 Gossypium raimondii HOM05D006261 ORTHO05D007979 1.3e-09 68.2 72 45.8
ClCG02G005750 Citrullus lanatus HOM05D006261 ORTHO05D007979 1.6e-09 67.8 72 47.2
FvH4_2g06790 Fragaria vesca HOM05D006261 ORTHO05D007979 1.6e-09 67.8 72 50.0
FAN27G0123 Fragaria x ananassa HOM05D006261 ORTHO05D007979 1.6e-09 67.8 72 50.0
HanXRQChr16g0508741 Helianthus annuus HOM05D006261 ORTHO05D007979 2.2e-09 67.4 75 41.3
AUR62016631 Chenopodium quinoa HOM05D006261 ORTHO05D007979 2.8e-09 67.0 75 46.7
RcHm_v2.0_Chr6g0259011 Rosa chinensis HOM05D006261 ORTHO05D007979 2.8e-09 67.0 77 46.8
Thecc.02G096300 Theobroma cacao HOM05D006261 ORTHO05D007979 2.8e-09 67.0 125 37.6
AUR62011430 Chenopodium quinoa HOM05D006261 ORTHO05D007979 3.7e-09 66.6 75 46.7
Potri.004G144100 Populus trichocarpa HOM05D006261 ORTHO05D007979 3.7e-09 66.6 72 43.1
CANSAT25G2015 Cannabis sativa HOM05D006261 ORTHO05D007979 4.8e-09 66.2 72 48.6
Prupe.8G116700 Prunus persica HOM05D006261 ORTHO05D007979 4.8e-09 66.2 72 47.2
GSVIVG01031798001 Vitis vinifera HOM05D006261 ORTHO05D007979 4.8e-09 66.2 70 48.6
Sed0027300 Sechium edule HOM05D006261 ORTHO05D007979 6.3e-09 65.9 119 39.5
CAN.G406.2 Capsicum annuum HOM05D006261 ORTHO05D007979 8.2e-09 65.5 72 43.1
Manes.15G143000 Manihot esculenta HOM05D006261 ORTHO05D007979 8.2e-09 65.5 72 45.8
MBI02_g21208_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 1.1e-08 65.1 72 44.4
Nn5g30173 Nelumbo nucifera HOM05D006261 ORTHO05D007979 1.4e-08 64.7 72 47.2
MD10G1089700 Malus domestica HOM05D006261 ORTHO05D007979 2.4e-08 63.9 72 47.2
Atru.chr5.2784_Atru.chr5.2785 Acer truncatum HOM05D006261 ORTHO05D007979 3.1e-08 63.5 70 45.7
Atru.chr5.2799_Atru.chr5.2800 Acer truncatum HOM05D006261 ORTHO05D007979 3.1e-08 63.5 70 45.7
Thhalv10025131m.g Eutrema salsugineum HOM05D006261 ORTHO05D007979 3.1e-08 63.5 72 41.7
CARHR242070 Cardamine hirsuta HOM05D006261 ORTHO05D007979 4.1e-08 63.2 72 40.3
BcaB01g01387 Brassica carinata HOM05D006261 ORTHO05D007979 6.9e-08 62.4 73 41.1
Gohir.A01G006000 Gossypium hirsutum HOM05D006261 ORTHO05D007979 6.9e-08 62.4 72 44.4
BcaB01g01385 Brassica carinata HOM05D006261 ORTHO05D007979 9.0e-08 62.0 74 40.5
C01p04840 Brassica napus HOM05D006261 ORTHO05D007979 9.0e-08 62.0 72 40.3
Glyma.20G009900 Glycine max HOM05D006261 ORTHO05D007979 1.2e-07 61.6 54 51.9
SalBow6G7179 Salvia bowleyana HOM05D006261 ORTHO05D007979 1.2e-07 61.6 72 40.3
CiPaw.05G054700 Carya illinoinensis HOM05D006261 ORTHO05D007979 1.5e-07 61.2 103 35.9
Sp7g31680 Schrenkiella parvula HOM05D006261 ORTHO05D007979 1.5e-07 61.2 72 40.3
A01p04450 Brassica napus HOM05D006261 ORTHO05D007979 3.4e-07 60.1 72 38.9
BolC1t00468H Brassica oleracea HOM05D006261 ORTHO05D007979 3.4e-07 60.1 72 38.9
BraA01t00432Z Brassica rapa HOM05D006261 ORTHO05D007979 3.4e-07 60.1 72 38.9
Carub.0007s0647 Capsella rubella HOM05D006261 ORTHO05D007979 3.4e-07 60.1 72 40.3
MELO3C018434.2 Cucumis melo HOM05D006261 ORTHO05D007979 3.4e-07 60.1 65 47.7
ECA236G1018 Erigeron canadensis HOM05D006261 ORTHO05D001911 5.9e-07 59.3 75 38.7
Hma1.2p1_0584F.1_g183110 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 5.9e-07 59.3 89 39.3
Hma1.2p1_3161F.1_g333480 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 5.9e-07 59.3 89 39.3
Oeu007256.2 Olea europaea HOM05D006261 ORTHO05D007979 5.9e-07 59.3 72 40.3
AL7G17470 Arabidopsis lyrata HOM05D006261 ORTHO05D007979 7.7e-07 58.9 72 40.3
Ah.01g020100 Amaranthus hybridus HOM05D006261 ORTHO05D007979 1.0e-06 58.5 61 49.2
AT4G33945 Arabidopsis thaliana HOM05D006261 ORTHO05D007979 1.0e-06 58.5 72 38.9
BcaB06g27277 Brassica carinata HOM05D006261 ORTHO05D007979 1.0e-06 58.5 73 39.7
SGA_v2.0_scaffold58G20611 Striga asiatica HOM05D006261 ORTHO05D007979 1.0e-06 58.5 75 38.7
unitig_21.g20756 Utricularia gibba HOM05D006261 ORTHO05D007979 1.7e-06 57.8 75 38.7
Aa31LG2G16340 Aethionema arabicum HOM05D006261 ORTHO05D007979 2.2e-06 57.4 72 37.5
THA.LOC104807349 Tarenaya hassleriana HOM05D006261 ORTHO05D007979 2.2e-06 57.4 72 37.5
Lsat_1_v5_gn_7_87821 Lactuca sativa HOM05D006261 ORTHO05D007979 2.9e-06 57.0 125 33.6
MSTRG.16765 Avicennia marina HOM05D006261 ORTHO05D007979 3.8e-06 56.6 70 38.6
ATR0097G005 Amborella trichopoda HOM05D006261 ORTHO05D007979 6.5e-06 55.8 73 38.4
CDE10G0955 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 8.5e-06 55.5 72 38.9
Zm00001eb255680 Zea mays HOM05D006261 ORTHO05D007979 8.5e-06 55.5 72 36.1


User provided reference genes

Program Settings