Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0023497 Lotus japonicus HOM05D007140 ORTHO05D008539 1.9e-70 270.4 335 100.0
Glyma.20G123800 Glycine max HOM05D007140 ORTHO05D008539 4.8e-26 122.9 338 58.3
Ca_23696_v3 Cicer arietinum L. HOM05D007140 ORTHO05D008539 1.9e-19 100.9 337 59.3
VMungo0720G0754 Vigna mungo HOM05D007140 ORTHO05D008539 2.8e-18 97.1 336 56.5
TPR.G4844 Trifolium pratense HOM05D007140 ORTHO05D008539 6.9e-17 92.4 337 63.5
Psat6g222160 Pisum sativum HOM05D007140 ORTHO05D008539 3.4e-16 90.1 318 66.4
Lalb_Chr21g0308581 Lupinus albus HOM05D007140 ORTHO05D008539 5.9e-16 89.4 311 59.8
Phvul.007G035100 Phaseolus vulgaris HOM05D007140 ORTHO05D008539 3.8e-15 86.7 336 56.8
Glyma.10G266900 Glycine max HOM05D007140 ORTHO05D008539 1.6e-13 81.3 337 67.7
Medtr1g108700 Medicago truncatula HOM05D007140 ORTHO05D008539 2.4e-09 67.4 79 63.3
QL01p002793 Quercus lobata HOM05D007140 ORTHO05D008539 2.0e-08 64.3 88 83.0
Cc11_g09160 Coffea canephora HOM05D007140 ORTHO05D008539 3.4e-08 63.5 36 88.9
EL10Ac6g14263 Beta vulgaris HOM05D007140 ORTHO05D008539 4.5e-08 63.2 36 86.1
MELO3C012294.2 Cucumis melo HOM05D007140 ORTHO05D008539 7.7e-08 62.4 36 86.1
CsaV3_5G034830 Cucumis sativus L. HOM05D007140 ORTHO05D008539 7.7e-08 62.4 36 86.1
Sc04g0005790 Simmondsia chinensis HOM05D007140 ORTHO05D008539 7.7e-08 62.4 36 86.1
Ah.02g128120 Amaranthus hybridus HOM05D007140 ORTHO05D008539 1.0e-07 62.0 36 86.1
Lalb_Chr06g0165691 Lupinus albus HOM05D007140 ORTHO05D008539 1.0e-07 62.0 317 55.5
THA.LOC104824159 Tarenaya hassleriana HOM05D007140 ORTHO05D008539 1.0e-07 62.0 36 86.1
HPP92_004883 Vanilla planifolia HOM05D007140 ORTHO05D008539 1.0e-07 62.0 36 83.3
Cfa015795 Carpinus fangiana HOM05D007140 ORTHO05D008539 1.3e-07 61.6 36 86.1
CiPaw.05G246200 Carya illinoinensis HOM05D007140 ORTHO05D008539 1.3e-07 61.6 36 86.1
CDE06G2249 Ceratophyllum demersum HOM05D007140 ORTHO05D008539 1.3e-07 61.6 36 83.3
CDE07G0564 Ceratophyllum demersum HOM05D007140 ORTHO05D008539 1.3e-07 61.6 36 83.3
Haze_00698 Corylus avellana HOM05D007140 ORTHO05D008539 1.3e-07 61.6 36 86.1
Rhsim09G0068700 Rhododendron simsii HOM05D067272 ORTHO05D008539 1.3e-07 61.6 36 83.3
Sed0020048 Sechium edule HOM05D007140 ORTHO05D008539 1.3e-07 61.6 36 83.3
Ciclev10015782m.g Citrus clementina HOM05D007140 ORTHO05D008539 1.7e-07 61.2 36 86.1
Thhalv10001024m.g Eutrema salsugineum HOM05D007140 ORTHO05D008539 1.7e-07 61.2 36 83.3
Hma1.2p1_0114F.1_g055420 Hydrangea macrophylla HOM05D007140 ORTHO05D008539 1.7e-07 61.2 36 83.3
MD13G1031200 Malus domestica HOM05D007140 ORTHO05D008539 1.7e-07 61.2 36 83.3
Prupe.1G320900 Prunus persica HOM05D007140 ORTHO05D008539 1.7e-07 61.2 36 83.3
Os01g0120700 Oryza sativa ssp. japonica HOM05D007140 ORTHO05D008539 2.2e-07 60.8 36 80.6
SEGI_30462 Sequoiadendron giganteum HOM05D007140 ORTHO05D008539 2.2e-07 60.8 36 83.3
Lj3P876T20 Lonicera japonica HOM05D007140 ORTHO05D008539 2.9e-07 60.5 36 80.6
Cpa.g.sc65.99 Carica papaya HOM05D007140 ORTHO05D008539 3.8e-07 60.1 36 83.3
Eucgr.B02880 Eucalyptus grandis HOM05D007140 ORTHO05D008539 3.8e-07 60.1 36 83.3
FvH4_4g26261 Fragaria vesca HOM05D007140 ORTHO05D008539 3.8e-07 60.1 36 80.6
FAN17G0786 Fragaria x ananassa HOM05D007140 ORTHO05D008539 3.8e-07 60.1 36 80.6
FAN22G0565 Fragaria x ananassa HOM05D007140 ORTHO05D008539 3.8e-07 60.1 36 80.6
Gohir.A05G317300 Gossypium hirsutum HOM05D007140 ORTHO05D008539 3.8e-07 60.1 36 83.3
Gohir.D05G319100 Gossypium hirsutum HOM05D007140 ORTHO05D008539 3.8e-07 60.1 36 83.3
Gorai.009G342100 Gossypium raimondii HOM05D007140 ORTHO05D008539 3.8e-07 60.1 36 83.3
Manes.14G110300 Manihot esculenta HOM05D007140 ORTHO05D008539 3.8e-07 60.1 36 83.3
SHI16291 Sapria himalayana HOM05D007140 ORTHO05D008539 3.8e-07 60.1 36 83.3
Sp2g12570 Schrenkiella parvula HOM05D007140 ORTHO05D008539 3.8e-07 60.1 36 80.6
TWI79G1374 Tripterygium wilfordii HOM05D007140 ORTHO05D008539 3.8e-07 60.1 36 83.3
Actinidia31986 Actinidia chinensis HOM05D007140 ORTHO05D008539 5.0e-07 59.7 36 77.8
CiPaw.06G014500 Carya illinoinensis HOM05D007140 ORTHO05D008539 5.0e-07 59.7 36 83.3
COL.COLO4_06026 Corchorus olitorius HOM05D007140 ORTHO05D008539 5.0e-07 59.7 36 80.6
Nn4g24045 Nelumbo nucifera HOM05D007140 ORTHO05D008539 5.0e-07 59.7 36 80.6
PSO017G0369 Papaver somniferum HOM05D007140 ORTHO05D008539 5.0e-07 59.7 36 77.8
Sabra08G0095700 Salix brachista HOM05D007140 ORTHO05D008539 5.0e-07 59.7 36 83.3
ATR0691G199 Amborella trichopoda HOM05D007140 ORTHO05D008539 6.5e-07 59.3 36 77.8
BcaC06g31334 Brassica carinata HOM05D007140 ORTHO05D008539 6.5e-07 59.3 36 77.8
A06p44680 Brassica napus HOM05D007140 ORTHO05D008539 6.5e-07 59.3 36 77.8
C07p31520 Brassica napus HOM05D007140 ORTHO05D008539 6.5e-07 59.3 36 77.8
BraA06t27341Z Brassica rapa HOM05D007140 ORTHO05D008539 6.5e-07 59.3 36 77.8
MBI16_g21172_MAGBIO Magnolia biondii HOM05D007140 ORTHO05D008539 6.5e-07 59.3 80 78.8
unitig_26.g10011 Utricularia gibba HOM05D007140 ORTHO05D008539 6.5e-07 59.3 36 80.6
Atru.chr11.355 Acer truncatum HOM05D007140 ORTHO05D008539 8.5e-07 58.9 36 80.6
Actinidia15238 Actinidia chinensis HOM05D007140 ORTHO05D008539 8.5e-07 58.9 36 80.6
FAN12G1559 Fragaria x ananassa HOM05D003680 ORTHO05D004264 8.5e-07 58.9 36 77.8
PGR119G2007 Punica granatum HOM05D007140 ORTHO05D008539 8.5e-07 58.9 36 80.6
RcHm_v2.0_Chr4g0433871 Rosa chinensis HOM05D007140 ORTHO05D008539 8.5e-07 58.9 36 77.8
BcaC03g16993 Brassica carinata HOM05D007140 ORTHO05D008539 1.1e-06 58.5 36 77.8
C02p49020 Brassica napus HOM05D007140 ORTHO05D008539 1.1e-06 58.5 36 77.8
BolC2t10986H Brassica oleracea HOM05D007140 ORTHO05D008539 1.1e-06 58.5 36 77.8
BolC2t10996H Brassica oleracea HOM05D007140 ORTHO05D008539 1.1e-06 58.5 36 77.8
DCAR_030189 Daucus carota HOM05D007140 ORTHO05D008539 1.1e-06 58.5 34 85.3
Duzib251G0133 Durio zibethinus HOM05D007140 ORTHO05D008539 1.1e-06 58.5 35 82.9
Migut.L00827 Erythranthe guttata HOM05D045982 ORTHO05D008539 1.1e-06 58.5 36 77.8
FAN07G2347 Fragaria x ananassa HOM05D007140 ORTHO05D008539 1.1e-06 58.5 36 77.8
Potri.008G126800 Populus trichocarpa HOM05D007140 ORTHO05D008539 1.1e-06 58.5 36 80.6
TAR622G0373 Trochodendron aralioides HOM05D007140 ORTHO05D008539 1.1e-06 58.5 36 75.0
CANSAT01G0870 Cannabis sativa HOM05D007140 ORTHO05D008539 1.4e-06 58.2 36 80.6
Carub.0005s0008 Capsella rubella HOM05D007140 ORTHO05D008539 1.4e-06 58.2 35 77.1
Dinv04892 Davidia involucrata HOM05D007140 ORTHO05D008539 1.4e-06 58.2 36 77.8
PSO478G3468 Papaver somniferum HOM05D007140 ORTHO05D008539 1.4e-06 58.2 36 77.8
Zm00001eb126340 Zea mays HOM05D007140 ORTHO05D008539 1.9e-06 57.8 36 75.0
Oeu004318.1 Olea europaea HOM05D007140 ORTHO05D008539 2.5e-06 57.4 36 75.0
MSTRG.877 Avicennia marina HOM05D007140 ORTHO05D008539 3.2e-06 57.0 36 75.0
A02p31680 Brassica napus HOM05D007140 ORTHO05D008539 3.2e-06 57.0 36 75.0
C02p49060 Brassica napus HOM05D007140 ORTHO05D008539 3.2e-06 57.0 36 75.0
BraA02t08174Z Brassica rapa HOM05D007140 ORTHO05D008539 3.2e-06 57.0 36 75.0
TAR629G2134 Trochodendron aralioides HOM05D007140 ORTHO05D008539 3.2e-06 57.0 36 75.0
AL5G10050 Arabidopsis lyrata HOM05D007140 ORTHO05D008539 4.2e-06 56.6 35 74.3
AT2G01100 Arabidopsis thaliana HOM05D007140 ORTHO05D008539 4.2e-06 56.6 35 74.3
Oeu044323.1 Olea europaea HOM05D007140 ORTHO05D008539 4.2e-06 56.6 36 72.2
SalBow8G0138 Salvia bowleyana HOM05D007140 ORTHO05D008539 4.2e-06 56.6 36 72.2
Zm00001eb334820 Zea mays HOM05D007140 ORTHO05D008539 7.2e-06 55.8 34 76.5
SGA_v2.0_scaffold50G18534 Striga asiatica HOM05D007140 ORTHO05D008539 9.4e-06 55.5 36 75.0
TAR371G0416 Trochodendron aralioides HOM05D007140 ORTHO05D008539 9.4e-06 55.5 35 77.1


User provided reference genes

Program Settings