Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0023338 Lotus japonicus HOM05D006169 ORTHO05D007698 2.6e-149 531.9 258 100.0
Glyma.10G150300 Glycine max HOM05D006169 ORTHO05D007698 1.0e-121 440.3 258 85.3
Phvul.007G198500 Phaseolus vulgaris HOM05D006169 ORTHO05D007698 4.9e-119 431.4 254 83.5
Medtr1g083600 Medicago truncatula HOM05D006169 ORTHO05D007698 2.7e-117 425.6 262 81.7
Ca_10150_v3 Cicer arietinum L. HOM05D006169 ORTHO05D007698 4.5e-117 424.9 262 81.3
Lalb_Chr06g0167751 Lupinus albus HOM05D006169 ORTHO05D007698 4.6e-109 398.3 260 79.2
arahy.Tifrunner.gnm1.ann1.NVQ69B Arachis hypogaea HOM05D006169 ORTHO05D007698 2.9e-108 395.6 269 78.8
Peaxi162Scf00484g00066 Petunia axillaris HOM05D006169 ORTHO05D007698 6.8e-105 384.4 262 73.3
Manes.08G114800 Manihot esculenta HOM05D006169 ORTHO05D007698 5.8e-104 381.3 274 70.8
CANSAT54G3053 Cannabis sativa HOM05D006169 ORTHO05D007698 7.5e-104 380.9 247 75.7
MD04G1197600 Malus domestica HOM05D006169 ORTHO05D007698 1.7e-103 379.8 276 70.3
Nitab4.5_0001266g0050 Nicotiana tabacum HOM05D006169 ORTHO05D007698 2.9e-103 379.0 271 72.3
AUR62000726 Chenopodium quinoa HOM05D006169 ORTHO05D007698 4.9e-103 378.3 237 77.6
QL03p019145 Quercus lobata HOM05D006169 ORTHO05D007698 3.2e-102 375.6 272 70.6
Ciclev10001820m.g Citrus clementina HOM05D006169 ORTHO05D007698 4.1e-102 375.2 270 71.5
CsaV3_2G006780 Cucumis sativus L. HOM05D006169 ORTHO05D007698 4.1e-102 375.2 240 76.7
Rhsim05G0136600 Rhododendron simsii HOM05D006169 ORTHO05D007698 5.4e-102 374.8 214 83.6
RcHm_v2.0_Chr3g0456451 Rosa chinensis HOM05D006169 ORTHO05D007698 9.2e-102 374.0 240 76.7
Thecc.05G316900 Theobroma cacao HOM05D006169 ORTHO05D007698 9.2e-102 374.0 269 72.9
Cc02_g34500 Coffea canephora HOM05D006169 ORTHO05D007698 1.2e-101 373.6 268 72.0
Gohir.A11G270300 Gossypium hirsutum HOM05D006169 ORTHO05D007698 1.6e-101 373.2 264 72.7
Duzib177G0247 Durio zibethinus HOM05D006169 ORTHO05D007698 2.7e-101 372.5 270 71.1
Potri.013G012400 Populus trichocarpa HOM05D006169 ORTHO05D007698 2.7e-101 372.5 253 72.7
FvH4_6g06920 Fragaria vesca HOM05D006169 ORTHO05D007698 3.5e-101 372.1 234 76.9
Gorai.007G302700 Gossypium raimondii HOM05D006169 ORTHO05D007698 3.5e-101 372.1 264 72.3
GSVIVG01031157001 Vitis vinifera HOM05D006169 ORTHO05D007698 3.5e-101 372.1 216 81.9
THA.LOC104802790 Tarenaya hassleriana HOM05D006169 ORTHO05D007698 4.6e-101 371.7 257 71.2
Aqoxy5G00801 Aquilegia oxysepala HOM05D006169 ORTHO05D007698 1.0e-100 370.5 248 72.6
Migut.N02103 Erythranthe guttata HOM05D006169 ORTHO05D007698 5.0e-100 368.2 223 79.4
Eucgr.L02153 Eucalyptus grandis HOM05D006169 ORTHO05D007698 5.0e-100 368.2 274 67.9
MELO3C004212.2 Cucumis melo HOM05D006169 ORTHO05D007698 1.1e-99 367.1 239 75.3
TWI56G0200 Tripterygium wilfordii HOM05D006169 ORTHO05D007698 4.3e-99 365.2 272 68.4
Lsat_1_v5_gn_7_73300 Lactuca sativa HOM05D006169 ORTHO05D007698 5.6e-99 364.8 258 70.2
COL.COLO4_10563 Corchorus olitorius HOM05D006169 ORTHO05D007698 7.3e-99 364.4 269 71.4
CAN.G813.8 Capsicum annuum HOM05D006169 ORTHO05D007698 1.6e-98 363.2 216 78.7
HanXRQChr06g0182151 Helianthus annuus HOM05D006169 ORTHO05D007698 1.6e-98 363.2 256 71.5
DCAR_029375 Daucus carota HOM05D006169 ORTHO05D007698 2.1e-98 362.8 213 82.2
Gohir.D11G280500 Gossypium hirsutum HOM05D006169 ORTHO05D007698 2.1e-98 362.8 264 70.8
Sed0028110 Sechium edule HOM05D006169 ORTHO05D007698 3.6e-98 362.1 272 67.6
Hma1.2p1_1441F.1_g283670 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 4.7e-98 361.7 269 70.6
Eucgr.H03261 Eucalyptus grandis HOM05D006169 ORTHO05D007698 1.8e-97 359.8 273 66.7
Lj9C200T3 Lonicera japonica HOM05D006169 ORTHO05D007698 2.3e-97 359.4 288 65.3
SalBow3G0569 Salvia bowleyana HOM05D006169 ORTHO05D007698 4.0e-97 358.6 274 65.3
CARHR080070 Cardamine hirsuta HOM05D006169 ORTHO05D007698 5.2e-97 358.2 247 70.0
ECA236G4200 Erigeron canadensis HOM05D006169 ORTHO05D007698 6.8e-97 357.8 259 69.9
PGR031G2380 Punica granatum HOM05D006169 ORTHO05D007698 6.8e-97 357.8 216 79.2
Thhalv10021364m.g Eutrema salsugineum HOM05D006169 ORTHO05D007698 1.5e-96 356.7 252 69.0
AT3G05625 Arabidopsis thaliana HOM05D006169 ORTHO05D007698 3.4e-96 355.5 216 76.4
Eucgr.H04522 Eucalyptus grandis HOM05D006169 ORTHO05D007698 3.4e-96 355.5 275 65.8
Solyc10g044710.2 Solanum lycopersicum HOM05D006169 ORTHO05D007698 3.4e-96 355.5 216 79.2
Sopen10g013390 Solanum pennellii HOM05D006169 ORTHO05D007698 7.5e-96 354.4 216 78.7
A03p34240 Brassica napus HOM05D006169 ORTHO05D007698 2.9e-95 352.4 249 68.7
BraA03t12598Z Brassica rapa HOM05D006169 ORTHO05D007698 2.9e-95 352.4 249 68.7
Carub.0003s0495 Capsella rubella HOM05D006169 ORTHO05D007698 2.9e-95 352.4 238 73.1
Atru.chr5.1841 Acer truncatum HOM05D006169 ORTHO05D007698 3.7e-95 352.1 221 77.4
Sp3g04510 Schrenkiella parvula HOM05D006169 ORTHO05D007698 4.9e-95 351.7 247 68.8
Sc14g0006600 Simmondsia chinensis HOM05D006169 ORTHO05D007698 4.9e-95 351.7 261 67.0
Actinidia02688 Actinidia chinensis HOM05D006169 ORTHO05D007698 6.4e-95 351.3 249 72.7
BcaB04g19252 Brassica carinata HOM05D006169 ORTHO05D007698 6.4e-95 351.3 250 68.0
Sabra13G0011000 Salix brachista HOM05D006169 ORTHO05D007698 1.4e-94 350.1 245 71.0
BcaB04g19251 Brassica carinata HOM05D006169 ORTHO05D007698 1.9e-94 349.7 249 67.9
BolC3t16445H Brassica oleracea HOM05D006169 ORTHO05D007698 2.4e-94 349.4 250 67.6
Ah.04g161300 Amaranthus hybridus HOM05D006169 ORTHO05D007698 3.2e-94 349.0 232 73.7
SGA_v2.0_scaffold81G26108 Striga asiatica HOM05D006169 ORTHO05D007698 7.1e-94 347.8 221 76.0
AL3G16270 Arabidopsis lyrata HOM05D006169 ORTHO05D007698 9.2e-94 347.4 247 67.6
Aa31LG5G16050 Aethionema arabicum HOM05D006169 ORTHO05D007698 1.2e-93 347.1 256 67.2
TPR.G17714 Trifolium pratense HOM05D006169 ORTHO05D007698 1.7e-92 343.2 180 89.4
PSO210G0761 Papaver somniferum HOM05D006169 ORTHO05D007698 2.3e-92 342.8 233 70.4
Haze_04109 Corylus avellana HOM05D006169 ORTHO05D007698 3.3e-91 339.0 271 66.4
HPP92_016954 Vanilla planifolia HOM05D006169 ORTHO05D007698 2.1e-90 336.3 254 66.9
CDE05G1145 Ceratophyllum demersum HOM05D006169 ORTHO05D007698 3.6e-90 335.5 212 72.6
HPP92_016950 Vanilla planifolia HOM05D006169 ORTHO05D007698 3.6e-90 335.5 229 70.7
C03p41640 Brassica napus HOM05D006169 ORTHO05D007698 1.4e-89 333.6 242 68.2
PSO832G1922 Papaver somniferum HOM05D006169 ORTHO05D007698 1.8e-89 333.2 209 75.1
BcaB04g19253 Brassica carinata HOM05D006169 ORTHO05D007698 1.4e-86 323.6 248 64.1
ClCG02G015230 Citrullus lanatus HOM05D006169 ORTHO05D007698 4.1e-86 322.0 271 63.5
ATR0693G261 Amborella trichopoda HOM05D006169 ORTHO05D007698 2.7e-85 319.3 259 64.1
Cfa006660 Carpinus fangiana HOM05D006169 ORTHO05D007698 2.7e-85 319.3 251 67.3
CiPaw.08G158800 Carya illinoinensis HOM05D006169 ORTHO05D007698 1.0e-84 317.4 265 63.8
EL10Ac4g09881 Beta vulgaris HOM05D006169 ORTHO05D007698 6.6e-84 314.7 235 69.4
FAN14G4015 Fragaria x ananassa HOM05D006169 ORTHO05D007698 5.6e-83 311.6 171 83.6
unitig_0.g2320 Utricularia gibba HOM05D006169 ORTHO05D007698 9.6e-83 310.8 216 71.3
Psat6g151520 Pisum sativum HOM05D006169 ORTHO05D007698 2.1e-82 309.7 190 81.6
Prupe.6G318000 Prunus persica HOM05D006169 ORTHO05D007698 2.8e-82 309.3 215 71.2
FAN09G1827 Fragaria x ananassa HOM05D006169 ORTHO05D007698 1.1e-81 307.4 234 67.1
Hund07115 Selenicereus undatus HOM05D006169 ORTHO05D007698 1.1e-81 307.4 248 65.3
AUR62005238 Chenopodium quinoa HOM05D006169 ORTHO05D007698 1.8e-81 306.6 169 82.8
SEGI_23594 Sequoiadendron giganteum HOM05D006169 ORTHO05D007698 2.0e-80 303.1 216 67.6
Nn3g21567 Nelumbo nucifera HOM05D006169 ORTHO05D007698 7.6e-80 301.2 263 60.8
MBI18_g25080_MAGBIO Magnolia biondii HOM05D006169 ORTHO05D007698 1.3e-79 300.4 196 76.0
Hma1.2p1_1441F.1_g283680 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 1.7e-79 300.1 226 70.8
Cpa.g.sc48.120 Carica papaya HOM05D006169 ORTHO05D007698 2.2e-79 299.7 316 55.7
ClCG00G004550 Citrullus lanatus HOM05D006169 ORTHO05D007698 1.9e-75 286.6 352 48.9
VMungo0720G2022 Vigna mungo HOM05D006169 ORTHO05D007698 3.3e-75 285.8 245 66.5
CDE11G0042 Ceratophyllum demersum HOM05D006169 ORTHO05D007698 3.6e-74 282.3 229 59.8
arahy.Tifrunner.gnm1.ann1.X8FEVW Arachis hypogaea HOM05D006169 ORTHO05D007698 1.2e-72 277.3 190 78.9
Pp3c1_33190 Physcomitrium patens HOM05D006169 ORTHO05D007698 3.4e-72 275.8 207 65.2
Zm00001eb340780 Zea mays HOM05D006169 ORTHO05D007698 3.2e-70 269.2 199 66.8
Dinv24403 Davidia involucrata HOM05D006169 ORTHO05D007698 4.6e-69 265.4 205 68.3
Oeu048884.1 Olea europaea HOM05D006169 ORTHO05D007698 8.7e-68 261.2 194 69.1
Mapoly0065s0090 Marchantia polymorpha HOM05D006169 ORTHO05D007698 6.2e-66 255.0 195 61.0
Actinidia19770 Actinidia chinensis HOM05D006169 ORTHO05D007698 9.9e-64 247.7 169 74.0
Nitab4.5_0000005g0540 Nicotiana tabacum HOM05D006169 ORTHO05D007698 1.5e-59 233.8 141 80.9
CBR_g8203 Chara braunii HOM05D006169 ORTHO05D007698 3.7e-58 229.2 209 54.1
Glyma.20G237950 Glycine max HOM05D006169 ORTHO05D007698 4.5e-56 222.2 120 88.3
FAN05G4461 Fragaria x ananassa HOM05D006169 ORTHO05D007698 2.2e-55 219.9 183 64.5
Cre12.g508350 Chlamydomonas reinhardtii HOM05D006169 ORTHO05D007698 2.9e-55 219.5 181 56.9
AagrBONN_evm.TU.Sc2ySwM_344.2014 Anthoceros agrestis HOM05D006169 ORTHO05D007698 7.9e-53 211.5 161 61.5
SMO358G0244 Selaginella moellendorffii HOM05D006169 ORTHO05D007698 1.5e-51 207.2 179 53.1
TAR365G0132 Trochodendron aralioides HOM05D002548 ORTHO05D003031 6.1e-45 185.3 265 43.4
MCO01G635 Micromonas commoda HOM05D006169 ORTHO05D007698 1.0e-39 167.9 181 48.1
arahy.Tifrunner.gnm1.ann1.91HID7 Arachis hypogaea HOM05D006169 ORTHO05D007698 1.1e-38 164.5 81 93.8
arahy.Tifrunner.gnm1.ann1.Z5NCG3 Arachis hypogaea HOM05D006169 ORTHO05D007698 1.6e-37 160.6 81 92.6
arahy.Tifrunner.gnm1.ann1.W0CMT4 Arachis hypogaea HOM05D006169 ORTHO05D007698 1.7e-34 150.6 76 92.1
PGSC0003DMG400043741 Solanum tuberosum HOM05D006169 ORTHO05D007698 4.8e-34 149.1 118 63.6
RcHm_v2.0_Chr1g0332671 Rosa chinensis HOM05D006169 ORTHO05D007698 3.9e-28 129.4 69 84.1
SMO117G0309 Selaginella moellendorffii HOM05D006169 ORTHO05D007698 2.0e-27 127.1 118 44.1
PRCOL_00000586 Prasinoderma coloniale HOM05D006169 ORTHO05D007698 8.2e-26 121.7 181 37.6
arahy.Tifrunner.gnm1.ann1.CWA5R2 Arachis hypogaea HOM05D006169 ORTHO05D007698 2.6e-24 116.7 58 93.1
Sabra13G0011100 Salix brachista HOM05D006169 ORTHO05D007698 2.5e-22 110.2 134 49.3
CSS0040457 Camellia sinensis var. sinensis HOM05D006169 ORTHO05D007698 2.0e-19 100.5 51 92.2
MSTRG.5122 Avicennia marina HOM05D006169 ORTHO05D007698 3.3e-19 99.8 71 69.0
CSS0014495 Camellia sinensis var. sinensis HOM05D006169 ORTHO05D007698 2.8e-18 96.7 115 48.7
arahy.Tifrunner.gnm1.ann1.C5NY6B Arachis hypogaea HOM05D006169 ORTHO05D007698 7.0e-17 92.0 64 70.3
arahy.Tifrunner.gnm1.ann1.4I5A07 Arachis hypogaea HOM05D000158 ORTHO05D003614 1.2e-16 91.3 45 91.1
arahy.Tifrunner.gnm1.ann1.GNZ56J Arachis hypogaea HOM05D006169 ORTHO05D007698 1.9e-14 84.0 44 84.1
Os01g0343500 Oryza sativa ssp. japonica HOM05D006169 ORTHO05D007698 2.2e-10 70.5 113 39.8


User provided reference genes

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