Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0023317 Lotus japonicus HOM05D004973 ORTHO05D006119 3.4e-129 465.3 287 100.0
Glyma.10G047400 Glycine max HOM05D004973 ORTHO05D006119 1.3e-64 250.8 312 54.8
Medtr1g067220 Medicago truncatula HOM05D004973 ORTHO05D006119 4.1e-58 229.2 263 61.2
VMungo0720G0246 Vigna mungo HOM05D004973 ORTHO05D006119 8.2e-51 204.9 334 47.0
arahy.Tifrunner.gnm1.ann1.C8BSPY Arachis hypogaea HOM05D004973 ORTHO05D006119 6.1e-46 188.7 313 47.9
arahy.Tifrunner.gnm1.ann1.P2DQEA Arachis hypogaea HOM05D004973 ORTHO05D006119 5.2e-45 185.7 314 47.5
Phvul.007G161600 Phaseolus vulgaris HOM05D004973 ORTHO05D006119 5.7e-44 182.2 300 49.3
Glyma.13G135200 Glycine max HOM05D004973 ORTHO05D006119 1.7e-40 170.6 247 51.8
QL07p045858 Quercus lobata HOM05D004973 ORTHO05D006119 1.3e-35 154.5 280 41.4
TPR.G35656 Trifolium pratense HOM05D004973 ORTHO05D006119 1.5e-31 141.0 169 58.0
Ca_11442_v3 Cicer arietinum L. HOM05D004973 ORTHO05D006119 2.5e-31 140.2 284 40.8
Haze_20682 Corylus avellana HOM05D004973 ORTHO05D006119 5.5e-31 139.0 263 43.7
Manes.08G000800 Manihot esculenta HOM05D004973 ORTHO05D006119 3.6e-30 136.3 271 40.2
CANSAT80G1895 Cannabis sativa HOM05D004973 ORTHO05D006119 3.0e-29 133.3 259 39.8
Glyma.19G176500 Glycine max HOM05D004973 ORTHO05D006119 1.2e-28 131.3 213 46.9
FAN14G1622 Fragaria x ananassa HOM05D004973 ORTHO05D006119 5.7e-28 129.0 272 37.5
Glyma.03G176000 Glycine max HOM05D004973 ORTHO05D006119 6.3e-27 125.6 169 49.7
CiPaw.09G185000 Carya illinoinensis HOM05D004973 ORTHO05D006119 8.3e-27 125.2 272 40.1
FAN09G0990 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.4e-26 124.4 270 38.5
Lalb_Chr06g0171201 Lupinus albus HOM05D004973 ORTHO05D006119 1.8e-26 124.0 126 61.9
FAN05G3543 Fragaria x ananassa HOM05D004973 ORTHO05D006119 3.1e-26 123.2 279 37.6
Manes.09G071500 Manihot esculenta HOM05D004973 ORTHO05D006119 1.2e-25 121.3 259 39.4
Ciclev10012401m.g Citrus clementina HOM05D004973 ORTHO05D006119 2.7e-25 120.2 274 36.9
Lalb_Chr02g0153461 Lupinus albus HOM05D004973 ORTHO05D006119 7.7e-25 118.6 270 43.0
Thecc.05G050500 Theobroma cacao HOM05D004973 ORTHO05D006119 1.3e-24 117.9 271 36.5
Sabra06G0166700 Salix brachista HOM05D004973 ORTHO05D006119 2.3e-24 117.1 279 36.9
Prupe.6G245100 Prunus persica HOM05D004973 ORTHO05D009107 8.6e-24 115.2 263 35.0
COL.COLO4_10304 Corchorus olitorius HOM05D004973 ORTHO05D006119 1.1e-23 114.8 265 38.9
MD12G1129800 Malus domestica HOM05D004973 ORTHO05D006119 1.1e-23 114.8 274 39.8
GSVIVG01025573001 Vitis vinifera HOM05D004973 ORTHO05D009107 2.5e-23 113.6 278 36.3
Dinv37236 Davidia involucrata HOM05D004973 ORTHO05D006119 9.5e-23 111.7 273 36.3
CSS0037973 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 1.2e-22 111.3 276 36.6
Potri.016G082700 Populus trichocarpa HOM05D004973 ORTHO05D006119 1.2e-22 111.3 226 37.2
Hma1.2p1_0111F.1_g053560 Hydrangea macrophylla HOM05D004973 ORTHO05D006119 1.6e-22 110.9 268 34.7
Cpa.g.sc114.29 Carica papaya HOM05D004973 ORTHO05D006119 2.1e-22 110.5 256 37.5
Gorai.006G177300 Gossypium raimondii HOM05D004973 ORTHO05D006119 2.1e-22 110.5 269 35.7
Gohir.A09G160200 Gossypium hirsutum HOM05D004973 ORTHO05D006119 2.8e-22 110.2 259 36.3
Potri.006G216300 Populus trichocarpa HOM05D004973 ORTHO05D006119 3.6e-22 109.8 276 37.7
Psat6g069760 Pisum sativum HOM05D004973 ORTHO05D006119 5.2e-21 105.9 184 52.2
CiPaw.10G138900 Carya illinoinensis HOM05D004973 ORTHO05D006119 6.8e-21 105.5 311 34.1
Dinv35683 Davidia involucrata HOM05D004973 ORTHO05D006119 3.4e-20 103.2 271 34.7
DCAR_017742 Daucus carota HOM05D004973 ORTHO05D006119 1.3e-19 101.3 284 31.7
PGSC0003DMG400011051 Solanum tuberosum HOM05D004973 ORTHO05D006119 1.7e-19 100.9 244 36.9
Nitab4.5_0000202g0430 Nicotiana tabacum HOM05D004973 ORTHO05D006119 3.7e-19 99.8 288 31.9
Peaxi162Scf00472g00079 Petunia axillaris HOM05D004973 ORTHO05D006119 4.9e-19 99.4 269 33.5
RcHm_v2.0_Chr3g0468111 Rosa chinensis HOM05D004973 ORTHO05D006119 4.9e-19 99.4 104 59.6
VMungo1383G2298 Vigna mungo HOM05D004973 ORTHO05D006119 1.1e-18 98.2 156 44.9
CSS0008181 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 1.4e-18 97.8 265 32.5
Gohir.A04G077600 Gossypium hirsutum HOM05D004973 ORTHO05D006119 1.4e-18 97.8 264 34.8
PGR004G2597 Punica granatum HOM05D004973 ORTHO05D006119 1.4e-18 97.8 90 63.3
Gohir.D04G116800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 1.8e-18 97.4 263 35.0
TAR623G0749 Trochodendron aralioides HOM05D004973 ORTHO05D006119 2.4e-18 97.1 102 57.8
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 3.2e-18 96.7 267 35.2
HanXRQChr07g0195961 Helianthus annuus HOM05D004973 ORTHO05D006119 4.1e-18 96.3 313 31.0
Gorai.009G421700 Gossypium raimondii HOM05D004973 ORTHO05D006119 5.4e-18 95.9 263 35.0
Eucgr.A01206 Eucalyptus grandis HOM05D004973 ORTHO05D006119 7.0e-18 95.5 267 33.0
FAN02G2240 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.2e-17 94.7 215 35.3
Nn2g12943 Nelumbo nucifera HOM05D004973 ORTHO05D006119 1.2e-17 94.7 255 36.9
Nn2g10587 Nelumbo nucifera HOM05D004973 ORTHO05D006119 5.9e-17 92.4 118 50.0
CSS0000366 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 7.8e-17 92.0 265 30.9
FvH4_6g14910 Fragaria vesca HOM05D004973 ORTHO05D006119 1.0e-16 91.7 96 58.3
Gohir.D09G155800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 1.0e-16 91.7 99 55.6
Nitab4.5_0000643g0210 Nicotiana tabacum HOM05D004973 ORTHO05D006119 1.0e-16 91.7 264 34.8
Nitab4.5_0016310g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 1.0e-16 91.7 285 32.3
Solyc10g084420.2 Solanum lycopersicum HOM05D004973 ORTHO05D006119 1.3e-16 91.3 244 37.7
Sopen10g033860 Solanum pennellii HOM05D004973 ORTHO05D006119 2.9e-16 90.1 247 34.8
MD04G1111000 Malus domestica HOM05D004973 ORTHO05D006119 3.9e-16 89.7 110 53.6
Oeu060067.1 Olea europaea HOM05D004973 ORTHO05D006119 5.0e-16 89.4 290 30.7
Cc06_g03330 Coffea canephora HOM05D004973 ORTHO05D006119 6.6e-16 89.0 311 29.9
HanXRQChr14g0453421 Helianthus annuus HOM05D004973 ORTHO05D006119 6.6e-16 89.0 269 34.2
Migut.L01647 Erythranthe guttata HOM05D004973 ORTHO05D006119 1.5e-15 87.8 268 31.3
Lsat_1_v5_gn_2_110141 Lactuca sativa HOM05D004973 ORTHO05D006119 2.5e-15 87.0 295 34.2
Peaxi162Scf00597g00824 Petunia axillaris HOM05D004973 ORTHO05D006119 2.5e-15 87.0 257 34.2
ECA238G2925 Erigeron canadensis HOM05D004973 ORTHO05D006119 5.6e-15 85.9 283 32.2
THA.LOC104823441 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 5.6e-15 85.9 91 60.4
Atru.chr8.2512 Acer truncatum HOM05D004973 ORTHO05D006119 9.5e-15 85.1 156 47.4
CsaV3_3G035290 Cucumis sativus L. HOM05D004973 ORTHO05D006119 1.6e-14 84.3 261 33.0
CsaV3_4G024460 Cucumis sativus L. HOM05D004973 ORTHO05D006119 2.8e-14 83.6 74 62.2
AL4G33680 Arabidopsis lyrata HOM05D004973 ORTHO05D006119 6.1e-14 82.4 168 41.7
MSTRG.26739 Avicennia marina HOM05D004973 ORTHO05D006119 6.1e-14 82.4 72 62.5
SalBow4G1465 Salvia bowleyana HOM05D004973 ORTHO05D006119 1.8e-13 80.9 94 54.3
ClCG04G008700 Citrullus lanatus HOM05D004973 ORTHO05D006119 2.3e-13 80.5 74 60.8
Sc01g0003720 Simmondsia chinensis HOM05D004973 ORTHO05D006119 2.3e-13 80.5 215 35.8
MSTRG.10290 Avicennia marina HOM05D004973 ORTHO05D006119 3.1e-13 80.1 318 32.4
BraA03t11302Z Brassica rapa HOM05D000861 ORTHO05D001799 3.1e-13 80.1 79 58.2
Eucgr.K03187 Eucalyptus grandis HOM05D004973 ORTHO05D006119 4.0e-13 79.7 85 56.5
Sp4g19620 Schrenkiella parvula HOM05D004973 ORTHO05D006119 4.0e-13 79.7 96 55.2
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 5.2e-13 79.3 273 32.2
MELO3C003079.2 Cucumis melo HOM05D004973 ORTHO05D006119 5.2e-13 79.3 148 38.5
TWI53G0396 Tripterygium wilfordii HOM05D004973 ORTHO05D006119 5.2e-13 79.3 140 40.7
A03p20600 Brassica napus HOM05D000861 ORTHO05D001799 6.8e-13 79.0 165 39.4
Migut.J00395 Erythranthe guttata HOM05D004973 ORTHO05D006119 6.8e-13 79.0 257 29.6
Carub.0004s1921 Capsella rubella HOM05D004973 ORTHO05D006119 8.9e-13 78.6 92 55.4
Thhalv10017275m.g Eutrema salsugineum HOM05D004973 ORTHO05D006119 8.9e-13 78.6 102 52.9
AT2G37300 Arabidopsis thaliana HOM05D004973 ORTHO05D006119 1.2e-12 78.2 166 39.2
THA.LOC104805339 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 1.2e-12 78.2 105 49.5
Aqoxy4G03126 Aquilegia oxysepala HOM05D004973 ORTHO05D006119 1.5e-12 77.8 132 43.9
Lj2A104T80 Lonicera japonica HOM05D004973 ORTHO05D006119 1.5e-12 77.8 96 56.2
MELO3C009296.2 Cucumis melo HOM05D004973 ORTHO05D006119 2.0e-12 77.4 254 32.3
SGA_v2.0_scaffold35G14182 Striga asiatica HOM05D004973 ORTHO05D006119 2.0e-12 77.4 273 28.9
C04p65800 Brassica napus HOM05D004973 ORTHO05D006119 2.6e-12 77.0 103 52.4
BolC4t28082H Brassica oleracea HOM05D004973 ORTHO05D006119 2.6e-12 77.0 103 52.4
C03p24200 Brassica napus HOM05D000861 ORTHO05D001799 3.4e-12 76.6 64 65.6
BolC3t14814H Brassica oleracea HOM05D004973 ORTHO05D006119 3.4e-12 76.6 64 65.6
PSO384G3176 Papaver somniferum HOM05D004973 ORTHO05D006119 3.4e-12 76.6 86 52.3
BcaNung06611 Brassica carinata HOM05D004973 ORTHO05D006119 5.8e-12 75.9 98 52.0
A04p28480 Brassica napus HOM05D004973 ORTHO05D006119 7.5e-12 75.5 152 42.1
BcaNung06612 Brassica carinata HOM05D004973 ORTHO05D006119 9.8e-12 75.1 89 53.9
PGR004G0295 Punica granatum HOM05D004973 ORTHO05D006119 9.8e-12 75.1 263 31.9
Oeu029113.1 Olea europaea HOM05D004973 ORTHO05D006119 1.3e-11 74.7 255 31.4
BraA04t18326Z Brassica rapa HOM05D004973 ORTHO05D006119 1.7e-11 74.3 156 39.7
Os03g0283400 Oryza sativa ssp. japonica HOM05D004973 ORTHO05D006119 1.7e-11 74.3 91 54.9
arahy.Tifrunner.gnm1.ann1.X85SHR Arachis hypogaea HOM05D004973 ORTHO05D006119 2.2e-11 73.9 65 64.6
A05p08610 Brassica napus HOM05D004973 ORTHO05D006119 3.7e-11 73.2 61 67.2
EL10Ac7g17266 Beta vulgaris HOM05D004973 ORTHO05D006119 4.9e-11 72.8 271 31.0
BcaC02g07519 Brassica carinata HOM05D004973 ORTHO05D006119 6.4e-11 72.4 67 62.7
C04p10700 Brassica napus HOM05D004973 ORTHO05D006119 6.4e-11 72.4 67 62.7
arahy.Tifrunner.gnm1.ann1.4HMS3J Arachis hypogaea HOM05D004973 ORTHO05D006119 8.3e-11 72.0 76 53.9
Hund12070 Selenicereus undatus HOM05D004973 ORTHO05D006119 8.3e-11 72.0 264 33.3
DCAR_014954 Daucus carota HOM05D000267 ORTHO05D000298 1.9e-10 70.9 282 34.8
Sed0023997 Sechium edule HOM05D004973 ORTHO05D006119 1.9e-10 70.9 75 57.3
HPP92_001696 Vanilla planifolia HOM05D004973 ORTHO05D006119 1.9e-10 70.9 67 55.2
unitig_60.g25816 Utricularia gibba HOM05D004973 ORTHO05D006119 5.4e-10 69.3 71 57.7
Zm00001eb012960 Zea mays HOM05D004973 ORTHO05D006119 5.4e-10 69.3 82 52.4
vmacro20083 Vaccinium macrocarpon HOM05D004973 ORTHO05D006119 2.0e-09 67.4 255 33.7
Sed0020255 Sechium edule HOM05D004973 ORTHO05D006119 1.7e-08 64.3 250 28.4
MSTRG.19121 Avicennia marina HOM05D004973 ORTHO05D006119 2.3e-08 63.9 97 43.3
Sed0025194 Sechium edule HOM05D004973 ORTHO05D006119 2.3e-08 63.9 50 68.0
ClCG10G020720 Citrullus lanatus HOM05D004973 ORTHO05D006119 3.0e-08 63.5 266 30.8
CAN.G867.6 Capsicum annuum HOM05D004973 ORTHO05D006119 6.6e-08 62.4 257 28.8
MBI05_g16176_MAGBIO Magnolia biondii HOM05D004973 ORTHO05D006119 2.5e-07 60.5 81 49.4
CARHR132290 Cardamine hirsuta HOM05D004973 ORTHO05D006119 4.3e-07 59.7 163 35.0
RhsimUnG0120900 Rhododendron simsii HOM05D004973 ORTHO05D006119 9.5e-07 58.5 53 54.7


User provided reference genes

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