Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0023302 Lotus japonicus HOM05D004206 ORTHO05D003325 1.5e-130 469.5 241 100.0
Ca_09615_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 1.4e-59 233.8 264 53.8
Psat6g067720 Pisum sativum HOM05D004206 ORTHO05D003325 1.1e-48 197.6 266 52.3
Glyma.10G044400 Glycine max HOM05D004206 ORTHO05D003325 7.9e-47 191.4 242 51.2
Medtr1g068825 Medicago truncatula HOM05D004206 ORTHO05D003325 7.9e-47 191.4 265 51.7
TPR.G25989 Trifolium pratense HOM05D004206 ORTHO05D003325 2.0e-42 176.8 243 50.6
Lalb_Chr21g0314341 Lupinus albus HOM05D004206 ORTHO05D003325 1.6e-39 167.2 251 47.4
Lalb_Chr06g0171041 Lupinus albus HOM05D004206 ORTHO05D003325 6.1e-39 165.2 248 47.6
Lalb_Chr02g0153081 Lupinus albus HOM05D004206 ORTHO05D003325 1.3e-38 164.1 246 48.8
Phvul.007G158100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 2.3e-38 163.3 259 45.6
arahy.Tifrunner.gnm1.ann1.72TEPU Arachis hypogaea HOM05D004206 ORTHO05D003325 1.9e-32 143.7 261 42.9
Ca_08787_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 1.2e-31 141.0 249 45.0
VMungo0720G2610 Vigna mungo HOM05D004206 ORTHO05D003325 1.6e-31 140.6 224 43.8
Phvul.001G170100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 6.7e-30 135.2 241 45.6
Lalb_Chr20g0113171 Lupinus albus HOM05D004206 ORTHO05D003325 8.8e-30 134.8 246 45.9
Medtr7g099950 Medicago truncatula HOM05D004206 ORTHO05D003325 2.0e-29 133.7 248 46.0
Glyma.03G172400 Glycine max HOM05D004206 ORTHO05D003325 1.3e-28 131.0 252 44.8
Lalb_Chr25g0289551 Lupinus albus HOM05D004206 ORTHO05D003325 8.2e-28 128.3 244 46.3
Glyma.19G173300 Glycine max HOM05D004206 ORTHO05D003325 1.8e-27 127.1 248 46.0
VMungo1383G1995 Vigna mungo HOM05D004206 ORTHO05D003325 2.4e-27 126.7 157 50.3
Lj1g0028211 Lotus japonicus HOM05D004206 ORTHO05D003325 2.5e-24 116.7 161 47.2
TPR.G21456 Trifolium pratense HOM05D004206 ORTHO05D003325 2.5e-24 116.7 169 46.7
Psat3g048840 Pisum sativum HOM05D004206 ORTHO05D003325 6.1e-23 112.1 155 49.0
Psat2g133080 Pisum sativum HOM05D000159 ORTHO05D000148 3.3e-21 106.3 144 49.3
Glyma.13G132002 Glycine max HOM05D004206 ORTHO05D003325 1.6e-18 97.4 111 52.3
CiPaw.10G143300 Carya illinoinensis HOM05D004206 ORTHO05D003325 1.7e-17 94.0 177 42.9
Haze_20742 Corylus avellana HOM05D004206 ORTHO05D003325 1.8e-14 84.0 222 38.7
Cfa017429 Carpinus fangiana HOM05D004206 ORTHO05D003325 1.2e-13 81.3 222 37.4
FAN02G2861 Fragaria x ananassa HOM05D004206 ORTHO05D003325 2.6e-13 80.1 96 53.1
FAN05G4716 Fragaria x ananassa HOM05D004206 ORTHO05D003325 3.3e-13 79.7 92 54.3
FAN09G1551 Fragaria x ananassa HOM05D004206 ORTHO05D003325 3.3e-13 79.7 96 53.1
Potri.006G082100 Populus trichocarpa HOM05D004206 ORTHO05D003325 3.3e-13 79.7 152 34.9
Atru.chr8.1956 Acer truncatum HOM05D004206 ORTHO05D003325 4.4e-13 79.3 147 37.4
FvH4_6g14310 Fragaria vesca HOM05D004206 ORTHO05D003325 4.4e-13 79.3 92 54.3
Ciclev10012502m.g Citrus clementina HOM05D004206 ORTHO05D003325 9.7e-13 78.2 153 40.5
GSVIVG01025530001 Vitis vinifera HOM05D004206 ORTHO05D003325 1.7e-12 77.4 201 32.8
RcHm_v2.0_Chr3g0467301 Rosa chinensis HOM05D004206 ORTHO05D003325 2.8e-12 76.6 219 32.9
Nitab4.5_0000349g0070 Nicotiana tabacum HOM05D004206 ORTHO05D003325 3.7e-12 76.3 79 54.4
CiPaw.09G188800 Carya illinoinensis HOM05D004206 ORTHO05D003325 1.4e-11 74.3 181 39.2
Lj2A99T58 Lonicera japonica HOM05D004206 ORTHO05D003325 2.4e-11 73.6 54 63.0
Oeu026485.2 Olea europaea HOM05D004206 ORTHO05D003325 2.4e-11 73.6 172 35.5
Sc20g0004600 Simmondsia chinensis HOM05D004206 ORTHO05D003325 2.4e-11 73.6 146 38.4
Gohir.A09G158300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 3.1e-11 73.2 63 63.5
Prupe.6G250300 Prunus persica HOM05D004206 ORTHO05D003325 3.1e-11 73.2 184 31.5
Aqoxy4G02996 Aquilegia oxysepala HOM05D004206 ORTHO05D003325 4.1e-11 72.8 210 30.5
Gohir.A04G080300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 4.1e-11 72.8 205 32.7
Gohir.D04G119400 Gossypium hirsutum HOM05D004206 ORTHO05D003325 4.1e-11 72.8 212 34.0
Oeu036176.1 Olea europaea HOM05D004206 ORTHO05D003325 5.3e-11 72.4 170 35.9
MD12G1138400 Malus domestica HOM05D004206 ORTHO05D003325 7.0e-11 72.0 90 51.1
Aqoxy2G02033 Aquilegia oxysepala HOM05D004206 ORTHO05D003325 9.1e-11 71.6 189 34.9
Peaxi162Scf00039g01222 Petunia axillaris HOM05D004206 ORTHO05D003325 9.1e-11 71.6 143 37.8
Thecc.05G044400 Theobroma cacao HOM05D004206 ORTHO05D003325 9.1e-11 71.6 64 59.4
TAR371G1160 Trochodendron aralioides HOM05D004206 ORTHO05D003325 9.1e-11 71.6 190 32.1
Gohir.D09G153700 Gossypium hirsutum HOM05D004206 ORTHO05D003325 1.2e-10 71.2 65 60.0
Gorai.006G175200 Gossypium raimondii HOM05D004206 ORTHO05D003325 1.2e-10 71.2 65 60.0
MD04G1121200 Malus domestica HOM05D004206 ORTHO05D003325 1.2e-10 71.2 92 50.0
Nitab4.5_0000527g0130 Nicotiana tabacum HOM05D004206 ORTHO05D003325 1.2e-10 71.2 102 45.1
Solyc10g086360.2 Solanum lycopersicum HOM05D004206 ORTHO05D003325 1.2e-10 71.2 65 56.9
DCAR_009254 Daucus carota HOM05D004206 ORTHO05D003325 1.6e-10 70.9 92 43.5
Eucgr.K03159 Eucalyptus grandis HOM05D004206 ORTHO05D003325 1.6e-10 70.9 159 32.7
QL05p010542 Quercus lobata HOM05D004206 ORTHO05D003325 1.6e-10 70.9 153 37.3
SalBow3G3817 Salvia bowleyana HOM05D004206 ORTHO05D003325 2.0e-10 70.5 166 36.1
Gorai.012G101500 Gossypium raimondii HOM05D004206 ORTHO05D003325 2.7e-10 70.1 205 34.1
PGR004G1990 Punica granatum HOM05D004206 ORTHO05D003325 2.7e-10 70.1 168 32.7
CANSAT35G0311 Cannabis sativa HOM05D004206 ORTHO05D003325 3.5e-10 69.7 163 31.9
Duzib093G1984 Durio zibethinus HOM05D004206 ORTHO05D003325 3.5e-10 69.7 81 49.4
SGA_v2.0_scaffold126G33821 Striga asiatica HOM05D004206 ORTHO05D003325 3.5e-10 69.7 171 35.7
Actinidia07050 Actinidia chinensis HOM05D004206 ORTHO05D003325 4.5e-10 69.3 117 41.0
Lsat_1_v5_gn_1_55680 Lactuca sativa HOM05D004206 ORTHO05D003325 4.5e-10 69.3 117 42.7
Nitab4.5_0009149g0020 Nicotiana tabacum HOM05D004206 ORTHO05D003325 4.5e-10 69.3 74 47.3
PGR004G0289 Punica granatum HOM05D004206 ORTHO05D003325 4.5e-10 69.3 79 49.4
Hund00876 Selenicereus undatus HOM05D004206 ORTHO05D003325 4.5e-10 69.3 204 31.9
EL10Ac9g20956 Beta vulgaris HOM05D004206 ORTHO05D003325 5.9e-10 68.9 153 39.2
CAN.G97.20 Capsicum annuum HOM05D004206 ORTHO05D003325 5.9e-10 68.9 139 35.3
QL07p047329 Quercus lobata HOM05D004206 ORTHO05D003325 7.7e-10 68.6 153 36.6
Rhsim05G0188200 Rhododendron simsii HOM05D004206 ORTHO05D003325 7.7e-10 68.6 156 34.0
Solyc09g010410.3 Solanum lycopersicum HOM05D004206 ORTHO05D003325 7.7e-10 68.6 150 35.3
Duzib106G1929 Durio zibethinus HOM05D004206 ORTHO05D003325 1.0e-09 68.2 178 36.5
Manes.09G086700 Manihot esculenta HOM05D004206 ORTHO05D003325 1.0e-09 68.2 49 65.3
Oeu049209.1 Olea europaea HOM05D004206 ORTHO05D003325 1.3e-09 67.8 73 52.1
PGSC0003DMG400008929 Solanum tuberosum HOM05D004206 ORTHO05D003325 1.3e-09 67.8 74 47.3
Peaxi162Scf00407g00067 Petunia axillaris HOM05D004206 ORTHO05D003325 2.2e-09 67.0 139 36.7
Sopen10g035740 Solanum pennellii HOM05D004206 ORTHO05D003325 2.2e-09 67.0 144 37.5
Dinv35636 Davidia involucrata HOM05D004206 ORTHO05D003325 2.9e-09 66.6 210 32.9
Sopen09g005150 Solanum pennellii HOM05D004206 ORTHO05D003325 3.8e-09 66.2 151 35.1
PGSC0003DMG401019213 Solanum tuberosum HOM05D004206 ORTHO05D003325 3.8e-09 66.2 167 35.3
AUR62041741 Chenopodium quinoa HOM05D004206 ORTHO05D003325 5.0e-09 65.9 182 34.1
Duzib128G2059 Durio zibethinus HOM05D004206 ORTHO05D003325 5.0e-09 65.9 62 56.5
Hma1.2p1_0350F.1_g132380 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 5.0e-09 65.9 138 38.4
Sc01g0003990 Simmondsia chinensis HOM05D004206 ORTHO05D003325 5.0e-09 65.9 75 50.7
MSTRG.5685 Avicennia marina HOM05D004206 ORTHO05D003325 6.5e-09 65.5 132 38.6
CSS0031426 Camellia sinensis var. sinensis HOM05D000368 ORTHO05D000289 6.5e-09 65.5 87 47.1
Hma1.2p1_1065F.1_g253750 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 6.5e-09 65.5 138 38.4
Hma1.2p1_1707F.1_g298550 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 6.5e-09 65.5 215 35.3
Lsat_1_v5_gn_1_55700 Lactuca sativa HOM05D004206 ORTHO05D003325 6.5e-09 65.5 85 48.2
Nitab4.5_0002077g0110 Nicotiana tabacum HOM05D004206 ORTHO05D003325 6.5e-09 65.5 152 36.2
Aa31LG10G9300 Aethionema arabicum HOM05D008508 ORTHO05D003325 8.5e-09 65.1 50 62.0
Lj3C971T5 Lonicera japonica HOM05D004206 ORTHO05D003325 8.5e-09 65.1 68 54.4
Aa31LG5G22930 Aethionema arabicum HOM05D008508 ORTHO05D003325 1.5e-08 64.3 132 35.6
ECA233G2126 Erigeron canadensis HOM05D004206 ORTHO05D003325 1.5e-08 64.3 103 42.7
Manes.08G076700 Manihot esculenta HOM05D004206 ORTHO05D003325 1.5e-08 64.3 183 35.5
vmacro03102 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 1.5e-08 64.3 128 36.7
PGR004G2702 Punica granatum HOM05D004206 ORTHO05D003325 1.9e-08 63.9 145 35.9
SalBow4G2008 Salvia bowleyana HOM05D004206 ORTHO05D003325 1.9e-08 63.9 135 34.8
ATR0559G289 Amborella trichopoda HOM05D004206 ORTHO05D003325 3.2e-08 63.2 50 62.0
BcaC01g05613 Brassica carinata HOM05D008508 ORTHO05D003325 3.2e-08 63.2 134 35.1
C03p24300 Brassica napus HOM05D008508 ORTHO05D003325 3.2e-08 63.2 134 35.1
BolC3t14826H Brassica oleracea HOM05D008508 ORTHO05D003325 3.2e-08 63.2 134 35.1
CARHR132120 Cardamine hirsuta HOM05D008508 ORTHO05D003325 3.2e-08 63.2 85 42.4
COL.COLO4_14855 Corchorus olitorius HOM05D004206 ORTHO05D003325 3.2e-08 63.2 66 51.5
HanXRQChr11g0349321 Helianthus annuus HOM05D004206 ORTHO05D003325 3.2e-08 63.2 68 54.4
AUR62037393 Chenopodium quinoa HOM05D004206 ORTHO05D003325 4.2e-08 62.8 182 33.5
Cc06_g02970 Coffea canephora HOM05D004206 ORTHO05D003325 4.2e-08 62.8 255 27.8
MELO3C009278.2 Cucumis melo HOM05D004206 ORTHO05D003325 4.2e-08 62.8 172 29.7
HanXRQChr14g0453751 Helianthus annuus HOM05D004206 ORTHO05D003325 4.2e-08 62.8 173 34.7
Sabra06G0062000 Salix brachista HOM05D004206 ORTHO05D003325 4.2e-08 62.8 162 31.5
TAR633G1790 Trochodendron aralioides HOM05D004206 ORTHO05D003325 4.2e-08 62.8 206 30.6
Sed0018769 Sechium edule HOM05D004206 ORTHO05D003325 5.5e-08 62.4 88 44.3
CDE02G3836 Ceratophyllum demersum HOM05D004206 ORTHO05D003325 7.2e-08 62.0 84 46.4
Lsat_1_v5_gn_2_110540 Lactuca sativa HOM05D004206 ORTHO05D003325 7.2e-08 62.0 85 47.1
Nn2g10438 Nelumbo nucifera HOM05D004206 ORTHO05D003325 7.2e-08 62.0 46 63.0
TAR636G0761 Trochodendron aralioides HOM05D004206 ORTHO05D003325 7.2e-08 62.0 47 63.8
ECA238G1623 Erigeron canadensis HOM05D000150 ORTHO05D000108 9.4e-08 61.6 136 36.0
Gorai.007G375400 Gossypium raimondii HOM05D004206 ORTHO05D003325 1.6e-07 60.8 64 46.9
Eucgr.A01242 Eucalyptus grandis HOM05D004206 ORTHO05D003325 2.1e-07 60.5 55 52.7
PSO648G0001 Papaver somniferum HOM05D004206 ORTHO05D003325 2.1e-07 60.5 132 35.6
SGA_v2.0_scaffold75G24932 Striga asiatica HOM05D004206 ORTHO05D003325 2.1e-07 60.5 121 38.8
BcaC08g44645 Brassica carinata HOM05D008508 ORTHO05D003325 2.7e-07 60.1 53 52.8
C06p21610 Brassica napus HOM05D008508 ORTHO05D003325 2.7e-07 60.1 53 52.8
BolC4t22647H Brassica oleracea HOM05D008508 ORTHO05D003325 2.7e-07 60.1 54 53.7
CSS0042901 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 3.6e-07 59.7 154 33.8
ClCG10G020930 Citrullus lanatus HOM05D004206 ORTHO05D003325 3.6e-07 59.7 165 30.3
Lsat_1_v5_gn_6_32400 Lactuca sativa HOM05D004206 ORTHO05D003325 3.6e-07 59.7 131 38.9
Hund07780 Selenicereus undatus HOM05D004206 ORTHO05D003325 3.6e-07 59.7 131 35.9
Gohir.D11G345000 Gossypium hirsutum HOM05D004206 ORTHO05D003325 4.7e-07 59.3 64 45.3
TWI77G0356 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 4.7e-07 59.3 82 43.9
vmacro08670 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 4.7e-07 59.3 47 59.6
Actinidia05297 Actinidia chinensis HOM05D004206 ORTHO05D003325 6.1e-07 58.9 79 43.0
Actinidia26442 Actinidia chinensis HOM05D004206 ORTHO05D003325 6.1e-07 58.9 189 33.9
MSTRG.19101 Avicennia marina HOM05D004206 ORTHO05D003325 6.1e-07 58.9 118 38.1
HanXRQChr07g0196151 Helianthus annuus HOM05D004206 ORTHO05D003325 6.1e-07 58.9 228 32.5
TWI74G0821 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 6.1e-07 58.9 172 31.4
unitig_578.g15702 Utricularia gibba HOM05D004206 ORTHO05D003325 6.1e-07 58.9 38 68.4
MSTRG.26756 Avicennia marina HOM05D004206 ORTHO05D003325 8.0e-07 58.5 69 47.8
MBI05_g10357_MAGBIO Magnolia biondii HOM05D004206 ORTHO05D003325 8.0e-07 58.5 134 38.1
vmacro20128 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 8.0e-07 58.5 80 42.5
Cpa.g.sc11.170 Carica papaya HOM05D004206 ORTHO05D003325 1.0e-06 58.2 59 54.2
CDE09G0187 Ceratophyllum demersum HOM05D004206 ORTHO05D003325 1.0e-06 58.2 99 40.4
Carub.0005s2025 Capsella rubella HOM05D008508 ORTHO05D003325 1.4e-06 57.8 121 36.4
Actinidia13126 Actinidia chinensis HOM05D004206 ORTHO05D003325 1.8e-06 57.4 92 41.3
CsaV3_3G035080 Cucumis sativus L. HOM05D004206 ORTHO05D003325 1.8e-06 57.4 173 27.7
Migut.M01027 Erythranthe guttata HOM05D004206 ORTHO05D003325 1.8e-06 57.4 62 50.0
Gohir.A11G326100 Gossypium hirsutum HOM05D004206 ORTHO05D003325 1.8e-06 57.4 154 31.2
Rhsim13G0085900 Rhododendron simsii HOM05D004206 ORTHO05D003325 1.8e-06 57.4 110 35.5
AL4G33940 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 2.3e-06 57.0 86 40.7
BcaB01g00256 Brassica carinata HOM05D008508 ORTHO05D003325 2.3e-06 57.0 112 34.8
Migut.J00362 Erythranthe guttata HOM05D004206 ORTHO05D003325 2.3e-06 57.0 96 41.7
PSO339G1969 Papaver somniferum HOM05D004206 ORTHO05D003325 2.3e-06 57.0 132 34.1
BolC6t37349H Brassica oleracea HOM05D008508 ORTHO05D003325 3.0e-06 56.6 50 56.0
Thhalv10017918m.g Eutrema salsugineum HOM05D008508 ORTHO05D003325 4.0e-06 56.2 97 34.0
ECA248G2846 Erigeron canadensis HOM05D004206 ORTHO05D003325 5.2e-06 55.8 85 41.2
Sp4g19810 Schrenkiella parvula HOM05D008508 ORTHO05D003325 5.2e-06 55.8 117 35.0
AT2G37480 Arabidopsis thaliana HOM05D008508 ORTHO05D003325 6.8e-06 55.5 138 35.5
A03p20680 Brassica napus HOM05D008508 ORTHO05D003325 6.8e-06 55.5 113 35.4
A09p46660 Brassica napus HOM05D008508 ORTHO05D003325 6.8e-06 55.5 124 35.5
BraA03t11309Z Brassica rapa HOM05D008508 ORTHO05D003325 6.8e-06 55.5 113 35.4
BraA09t40129Z Brassica rapa HOM05D008508 ORTHO05D003325 8.8e-06 55.1 129 36.4


User provided reference genes

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