Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 1.9e-164 582.4 284 100.0
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 3.9e-77 292.4 310 60.0
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 5.4e-71 271.9 266 61.7
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 1.6e-70 270.4 285 59.3
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 2.1e-70 270.0 284 56.3
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 7.3e-68 261.5 273 60.4
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 9.6e-68 261.2 233 62.7
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 1.2e-65 254.2 312 50.6
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 4.4e-65 252.3 287 54.0
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 1.9e-63 246.9 295 54.6
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 1.2e-62 244.2 263 57.8
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 3.0e-61 239.6 285 55.1
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.5e-60 237.3 285 54.7
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 1.5e-60 237.3 285 54.7
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 1.9e-60 236.9 286 54.9
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 2.1e-59 233.4 229 59.8
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 4.8e-59 232.3 270 54.4
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 1.1e-58 231.1 258 57.0
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 4.0e-58 229.2 270 53.3
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 4.0e-58 229.2 284 52.8
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 5.3e-58 228.8 294 53.7
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 2.0e-57 226.9 302 50.3
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 5.8e-57 225.3 271 54.2
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 3.8e-56 222.6 286 52.1
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 3.8e-56 222.6 275 52.4
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 1.1e-55 221.1 305 50.8
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 1.9e-55 220.3 288 49.3
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 3.5e-54 216.1 268 53.0
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 6.0e-54 215.3 288 51.0
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 1.0e-53 214.5 228 58.3
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 5.1e-53 212.2 306 50.3
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 9.6e-52 208.0 225 58.7
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 2.1e-51 206.8 330 48.2
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 2.1e-51 206.8 330 48.2
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 4.0e-50 202.6 291 48.5
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 5.3e-50 202.2 278 51.4
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 6.9e-50 201.8 290 49.7
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 9.0e-50 201.4 273 50.2
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.5e-49 200.7 272 49.6
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 2.6e-49 199.9 270 50.4
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 2.6e-49 199.9 297 48.5
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 2.6e-49 199.9 270 49.6
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 3.4e-49 199.5 294 45.9
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 2.2e-48 196.8 239 53.6
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 2.9e-48 196.4 337 46.3
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 2.4e-47 193.4 252 50.8
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 2.1e-46 190.3 268 48.9
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 1.3e-45 187.6 250 51.6
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 1.9e-44 183.7 212 54.7
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 4.3e-44 182.6 257 46.7
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 7.4e-44 181.8 258 48.4
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 3.7e-43 179.5 278 47.5
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 4.8e-43 179.1 245 50.2
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 2.4e-42 176.8 232 49.6
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 5.3e-42 175.6 230 53.0
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 9.0e-42 174.9 246 51.2
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 5.8e-41 172.2 219 48.4
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 5.8e-41 172.2 252 44.8
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 7.6e-41 171.8 250 46.8
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 1.0e-40 171.4 282 44.0
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 3.8e-40 169.5 258 46.9
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 3.8e-40 169.5 281 44.5
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 1.9e-39 167.2 260 49.6
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 4.2e-39 166.0 249 46.6
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 4.2e-39 166.0 277 44.8
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 7.1e-39 165.2 330 43.0
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 1.2e-38 164.5 214 54.2
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 1.6e-38 164.1 235 46.8
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 2.7e-38 163.3 245 49.0
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 2.7e-38 163.3 228 49.1
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 1.3e-37 161.0 299 41.8
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 1.5e-36 157.5 275 45.5
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 1.5e-36 157.5 275 45.5
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 1.5e-36 157.5 275 45.5
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 7.4e-36 155.2 254 48.8
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 8.2e-35 151.8 275 43.6
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 3.1e-34 149.8 221 48.9
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 4.1e-34 149.4 268 41.8
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 3.4e-33 146.4 275 43.3
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 5.9e-33 145.6 247 42.5
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 2.2e-32 143.7 277 41.9
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 2.2e-32 143.7 255 43.9
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 2.9e-32 143.3 251 43.4
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 3.8e-32 142.9 257 44.7
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 1.1e-31 141.4 230 44.8
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 1.1e-31 141.4 279 40.5
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 1.4e-31 141.0 273 41.8
Lalb_Chr02g0145931 Lupinus albus HOM05D004123 ORTHO05D004768 1.9e-31 140.6 207 50.2
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 3.2e-31 139.8 256 42.6
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 7.2e-31 138.7 279 40.1
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 1.2e-30 137.9 270 44.1
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 6.1e-30 135.6 279 39.4
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 7.9e-30 135.2 274 39.1
Medtr1g110740 Medicago truncatula HOM05D004123 ORTHO05D004768 5.1e-29 132.5 256 41.4
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 6.7e-29 132.1 200 46.0
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 6.7e-29 132.1 259 41.3
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 1.9e-28 130.6 218 44.0
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 1.9e-28 130.6 236 42.8
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 1.9e-28 130.6 230 41.3
Ca_03055_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 1.9e-28 130.6 222 45.0
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 1.9e-28 130.6 255 42.0
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 7.4e-28 128.6 134 58.2
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 9.7e-28 128.3 263 41.4
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 1.6e-27 127.5 102 66.7
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 2.2e-27 127.1 231 42.0
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 2.8e-27 126.7 236 42.4
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 2.8e-27 126.7 212 44.3
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 2.4e-26 123.6 75 80.0
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 3.1e-26 123.2 224 42.9
Dinv21080 Davidia involucrata HOM05D004123 ORTHO05D004768 2.6e-25 120.2 290 36.6
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 1.1e-23 114.8 261 39.8
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 2.5e-23 113.6 268 41.8
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 2.5e-23 113.6 225 42.2
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 2.1e-22 110.5 246 37.4
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 2.7e-22 110.2 285 37.9
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 3.6e-22 109.8 231 37.2
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 4.6e-22 109.4 225 37.8
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 6.1e-22 109.0 170 45.9
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 7.9e-22 108.6 228 41.7
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 7.9e-22 108.6 73 74.0
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 7.9e-22 108.6 225 40.9
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 3.9e-21 106.3 239 39.3
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 3.9e-21 106.3 283 37.8
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 1.3e-19 101.3 237 41.8
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 1.7e-19 100.9 213 40.4
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 1.7e-19 100.9 213 40.4
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 2.2e-19 100.5 248 37.1
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 2.2e-19 100.5 143 46.9
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 2.2e-19 100.5 143 46.9
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 2.8e-19 100.1 195 42.6
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 8.2e-19 98.6 243 37.9
Ca_11169_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 1.8e-18 97.4 261 36.0
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 3.1e-18 96.7 227 37.9
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 6.9e-18 95.5 239 36.0
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 1.2e-17 94.7 172 40.1
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 2.6e-17 93.6 160 41.9
arahy.Tifrunner.gnm1.ann1.1XFG43 Arachis hypogaea HOM05D004123 ORTHO05D004768 5.9e-17 92.4 271 36.5
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 7.7e-17 92.0 214 39.7
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 8.5e-16 88.6 220 38.2
arahy.Tifrunner.gnm1.ann1.A2D7P4 Arachis hypogaea HOM05D004123 ORTHO05D004768 3.2e-15 86.7 253 37.9
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 3.2e-15 86.7 219 36.5
Nitab4.5_0000791g0080 Nicotiana tabacum HOM05D004123 ORTHO05D004768 1.8e-13 80.9 157 43.3
SalBow8G0756 Salvia bowleyana HOM05D004123 ORTHO05D004768 2.3e-13 80.5 248 35.5
Sopen05g005180 Solanum pennellii HOM05D004123 ORTHO05D004768 2.3e-13 80.5 213 34.3
CSS0040364 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 1.1e-12 78.2 205 38.0
TPR.G18805 Trifolium pratense HOM05D004123 ORTHO05D004768 1.6e-09 67.8 131 44.3
Migut.L01390 Erythranthe guttata HOM05D004123 ORTHO05D004768 5.9e-09 65.9 194 37.6
Peaxi162Scf00382g00826 Petunia axillaris HOM05D004123 ORTHO05D004768 5.9e-09 65.9 92 48.9
SEGI_27536 Sequoiadendron giganteum HOM05D004123 ORTHO05D000239 7.7e-09 65.5 64 53.1
THA.LOC104805006 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 8.5e-08 62.0 258 31.4
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.9e-07 60.8 83 44.6
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 1.9e-07 60.8 47 61.7
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 1.9e-07 60.8 47 61.7
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 9.4e-07 58.5 196 29.6
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 9.4e-07 58.5 103 39.8
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 4.7e-06 56.2 109 36.7
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 8.0e-06 55.5 166 30.1


User provided reference genes

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