Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0023255 Lotus japonicus HOM05D000240 ORTHO05D002608 2.3e-171 605.5 321 100.0
Lj5g0010376 Lotus japonicus HOM05D000240 ORTHO05D002608 8.3e-153 543.9 322 91.3
Ca_06978_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002608 3.0e-118 429.1 321 74.1
arahy.Tifrunner.gnm1.ann1.UY9GAA Arachis hypogaea HOM05D000240 ORTHO05D002608 4.9e-113 411.8 310 72.6
TPR.G13004 Trifolium pratense HOM05D000240 ORTHO05D002608 4.9e-113 411.8 319 70.8
arahy.Tifrunner.gnm1.ann1.IRA02K Arachis hypogaea HOM05D000240 ORTHO05D002608 6.5e-113 411.4 310 71.9
Lalb_Chr14g0368061 Lupinus albus HOM05D000240 ORTHO05D002608 1.1e-112 410.6 320 72.2
Medtr1g017540 Medicago truncatula HOM05D000240 ORTHO05D002608 4.6e-111 405.2 320 71.2
Phvul.001G029600 Phaseolus vulgaris HOM05D000240 ORTHO05D002608 3.4e-106 389.0 321 69.8
Glyma.14G089072 Glycine max HOM05D000240 ORTHO05D002608 5.9e-106 388.3 322 70.2
Glyma.17G233200 Glycine max HOM05D000240 ORTHO05D002608 1.3e-105 387.1 322 69.9
VMungo0647G2543 Vigna mungo HOM05D000240 ORTHO05D002608 3.8e-105 385.6 321 69.2
QL12p038572 Quercus lobata HOM05D000240 ORTHO05D002608 9.7e-77 291.2 348 51.1
GSVIVG01009305001 Vitis vinifera HOM05D000240 ORTHO05D002608 8.3e-76 288.1 350 51.1
CiPaw.07G172400 Carya illinoinensis HOM05D000240 ORTHO05D002608 9.4e-72 274.6 344 50.3
Psat6g017440 Pisum sativum HOM05D000240 ORTHO05D002608 1.2e-69 267.7 203 72.4
Thecc.08G085000 Theobroma cacao HOM05D000240 ORTHO05D002608 1.5e-69 267.3 350 48.9
Atru.chr13.866 Acer truncatum HOM05D000240 ORTHO05D002608 5.7e-69 265.4 341 49.0
Cfa013743 Carpinus fangiana HOM05D000240 ORTHO05D002608 8.3e-68 261.5 337 47.5
Ciclev10027806m.g Citrus clementina HOM05D000240 ORTHO05D002608 1.1e-67 261.2 348 47.1
Haze_22395 Corylus avellana HOM05D000240 ORTHO05D002608 5.4e-67 258.8 337 47.8
Haze_22403 Corylus avellana HOM05D000240 ORTHO05D002608 5.4e-67 258.8 337 47.8
Lalb_Chr22g0355771 Lupinus albus HOM05D000240 ORTHO05D002608 3.5e-66 256.1 203 70.0
Dinv44933 Davidia involucrata HOM05D000240 ORTHO05D002608 2.9e-65 253.1 350 47.4
TWI56G0102 Tripterygium wilfordii HOM05D000240 ORTHO05D002608 7.2e-64 248.4 346 47.1
vmacro04596 Vaccinium macrocarpon HOM05D000240 ORTHO05D002608 9.5e-64 248.1 350 45.7
CSS0016409 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D002608 2.8e-63 246.5 354 46.3
Potri.014G013300 Populus trichocarpa HOM05D000240 ORTHO05D002608 1.8e-59 233.8 348 43.7
Sabra14G0008100 Salix brachista HOM05D000240 ORTHO05D002608 1.8e-59 233.8 348 43.7
Lj4A75G32 Lonicera japonica HOM05D000240 ORTHO05D002608 1.6e-58 230.7 351 43.9
MD08G1078700 Malus domestica HOM05D000240 ORTHO05D002608 2.9e-57 226.5 349 44.4
Eucgr.F02228 Eucalyptus grandis HOM05D000240 ORTHO05D002608 9.5e-56 221.5 346 42.5
Nitab4.5_0001426g0030 Nicotiana tabacum HOM05D000240 ORTHO05D002608 1.6e-55 220.7 344 43.6
MD15G1065700 Malus domestica HOM05D000240 ORTHO05D002608 4.7e-55 219.2 341 44.0
PGSC0003DMG400004917 Solanum tuberosum HOM05D000240 ORTHO05D002608 1.2e-53 214.5 349 42.7
PGR031G0176 Punica granatum HOM05D000240 ORTHO05D002608 2.0e-53 213.8 349 41.8
Duzib093G1309 Durio zibethinus HOM05D000240 ORTHO05D002608 5.8e-53 212.2 341 42.5
Prupe.1G419600 Prunus persica HOM05D000240 ORTHO05D002608 8.3e-52 208.4 344 43.0
Sopen04g031170 Solanum pennellii HOM05D000240 ORTHO05D002608 1.4e-51 207.6 349 42.1
CAN.G1239.11 Capsicum annuum HOM05D000240 ORTHO05D002608 3.2e-51 206.5 348 42.5
CANSAT25G0470 Cannabis sativa HOM05D000240 ORTHO05D002608 4.1e-51 206.1 353 41.4
Peaxi162Scf00340g00071 Petunia axillaris HOM05D000240 ORTHO05D002608 7.0e-51 205.3 337 42.7
Rhsim07G0217600 Rhododendron simsii HOM05D000240 ORTHO05D002608 7.0e-51 205.3 314 43.9
Migut.C00475 Erythranthe guttata HOM05D000240 ORTHO05D002608 1.2e-50 204.5 349 39.3
Cc10_g07590 Coffea canephora HOM05D000240 ORTHO05D002608 1.6e-50 204.1 346 41.0
Solyc04g077540.4 Solanum lycopersicum HOM05D000240 ORTHO05D002608 7.8e-50 201.8 349 41.5
FAN27G1967 Fragaria x ananassa HOM05D000240 ORTHO05D002608 1.7e-49 200.7 341 41.3
Migut.O00025 Erythranthe guttata HOM05D000240 ORTHO05D002608 3.9e-49 199.5 349 38.7
TAR628G0964 Trochodendron aralioides HOM05D000240 ORTHO05D002608 6.6e-49 198.7 377 38.7
ClCG08G016690 Citrullus lanatus HOM05D000240 ORTHO05D002608 8.6e-49 198.4 347 40.6
COL.COLO4_28466 Corchorus olitorius HOM05D000240 ORTHO05D002608 4.3e-48 196.1 333 42.6
FAN15G2617 Fragaria x ananassa HOM05D000240 ORTHO05D002608 7.3e-48 195.3 352 40.1
FAN24G0204 Fragaria x ananassa HOM05D000240 ORTHO05D002608 3.6e-47 193.0 352 39.8
Nn5g30658 Nelumbo nucifera HOM05D000240 ORTHO05D002608 8.0e-47 191.8 350 38.6
MSTRG.1017 Avicennia marina HOM05D000240 ORTHO05D002608 2.3e-46 190.3 348 39.1
PSO541G1283 Papaver somniferum HOM05D000240 ORTHO05D002608 3.1e-46 189.9 323 40.6
FAN20G2284 Fragaria x ananassa HOM05D000240 ORTHO05D002608 5.2e-46 189.1 352 39.5
PSO675G0923 Papaver somniferum HOM05D000240 ORTHO05D002608 8.9e-46 188.3 326 39.9
DCAR_020061 Daucus carota HOM05D000240 ORTHO05D002608 1.2e-45 188.0 350 39.1
RcHm_v2.0_Chr6g0309971 Rosa chinensis HOM05D000240 ORTHO05D002608 3.7e-44 183.0 349 39.5
Hund05279 Selenicereus undatus HOM05D000240 ORTHO05D002608 2.4e-43 180.3 350 39.4
MELO3C010787.2 Cucumis melo HOM05D000240 ORTHO05D002608 1.6e-42 177.6 344 39.2
Lj5g0022233 Lotus japonicus HOM05D000240 ORTHO05D002608 1.6e-42 177.6 95 98.9
Sc15g0005400 Simmondsia chinensis HOM05D000240 ORTHO05D002608 2.3e-41 173.7 337 37.4
Nitab4.5_0002796g0020 Nicotiana tabacum HOM05D000240 ORTHO05D002608 5.1e-41 172.6 316 38.0
THA.LOC104816760 Tarenaya hassleriana HOM05D000240 ORTHO05D002608 2.5e-40 170.2 341 37.2
Aqoxy6G02483 Aquilegia oxysepala HOM05D000240 ORTHO05D002608 2.1e-39 167.2 344 36.3
CsaV3_2G025940 Cucumis sativus L. HOM05D000240 ORTHO05D002608 3.6e-39 166.4 342 37.4
ECA246G0380 Erigeron canadensis HOM05D000240 ORTHO05D002608 4.7e-39 166.0 327 34.9
EL10Ac1g02353 Beta vulgaris HOM05D000240 ORTHO05D002608 1.2e-37 161.4 348 32.2
AUR62037459 Chenopodium quinoa HOM05D000240 ORTHO05D002608 1.7e-36 157.5 350 32.9
Gohir.D02G088200 Gossypium hirsutum HOM05D000240 ORTHO05D002608 2.9e-36 156.8 203 44.8
Gorai.005G098800 Gossypium raimondii HOM05D000240 ORTHO05D002608 6.4e-36 155.6 203 44.8
Cpa.g.sc524.3 Carica papaya HOM05D000240 ORTHO05D002608 5.4e-35 152.5 356 34.0
CARHR283830 Cardamine hirsuta HOM05D000240 ORTHO05D002608 1.6e-34 151.0 333 34.5
Manes.05G183300 Manihot esculenta HOM05D000240 ORTHO05D002608 2.1e-34 150.6 352 34.1
A09p18080 Brassica napus HOM05D000240 ORTHO05D002608 2.7e-34 150.2 335 33.7
BraA09t37442Z Brassica rapa HOM05D000240 ORTHO05D002608 2.7e-34 150.2 335 33.7
SGA_v2.0_scaffold14G07077 Striga asiatica HOM05D000240 ORTHO05D002608 4.6e-34 149.4 348 34.5
Lsat_1_v5_gn_6_108441 Lactuca sativa HOM05D000240 ORTHO05D002608 3.0e-33 146.7 320 33.4
C09p22550 Brassica napus HOM05D000240 ORTHO05D002608 5.1e-33 146.0 335 32.5
BolC9t55171H Brassica oleracea HOM05D000240 ORTHO05D002608 5.1e-33 146.0 335 32.5
AUR62035009 Chenopodium quinoa HOM05D000240 ORTHO05D002608 8.6e-33 145.2 363 30.9
Thhalv10023277m.g Eutrema salsugineum HOM05D000240 ORTHO05D002608 1.2e-31 141.4 335 34.3
Sp2g05010 Schrenkiella parvula HOM05D000240 ORTHO05D002608 1.1e-30 138.3 345 32.8
Oeu048569.1 Olea europaea HOM05D000240 ORTHO05D002608 3.4e-29 133.3 340 34.4
HanXRQChr05g0163591 Helianthus annuus HOM05D000240 ORTHO05D002608 9.9e-29 131.7 315 36.5
Gohir.D06G022400 Gossypium hirsutum HOM05D000240 ORTHO05D002608 1.3e-28 131.3 309 34.3
Gorai.010G027000 Gossypium raimondii HOM05D000240 ORTHO05D002608 3.2e-27 126.7 309 34.0
FvH4_2g32710 Fragaria vesca HOM05D000240 ORTHO05D002608 9.3e-27 125.2 204 42.6
Gohir.D06G027000 Gossypium hirsutum HOM05D000240 ORTHO05D002608 9.3e-27 125.2 313 33.9
Gohir.A06G025300 Gossypium hirsutum HOM05D000240 ORTHO05D002608 1.6e-26 124.4 309 33.7
MBI16_g32084_MAGBIO Magnolia biondii HOM05D000240 ORTHO05D002608 2.5e-24 117.1 186 39.8
BcaC04g22168 Brassica carinata HOM05D000240 ORTHO05D002608 4.3e-24 116.3 311 31.2
Sabra02G0091400 Salix brachista HOM05D000240 ORTHO05D002608 4.3e-24 116.3 205 40.0
Oeu048570.1 Olea europaea HOM05D000285 ORTHO05D002608 9.6e-24 115.2 251 36.7
Nn6g34521 Nelumbo nucifera HOM05D000240 ORTHO05D002608 1.3e-23 114.8 186 40.9
Lj5g0010291 Lotus japonicus HOM05D000993 ORTHO05D019772 1.6e-23 114.4 56 98.2
Actinidia19586 Actinidia chinensis HOM05D000240 ORTHO05D018195 2.1e-23 114.0 281 34.9
Hma1.2p1_1170F.1_g263440 Hydrangea macrophylla HOM05D000240 ORTHO05D002608 8.1e-23 112.1 159 42.8
AT1G59540 Arabidopsis thaliana HOM05D000240 ORTHO05D002608 9.0e-22 108.6 340 31.2
CAN.G1239.13 Capsicum annuum HOM05D000240 ORTHO05D002608 5.8e-21 105.9 156 46.8
AL2G17530 Arabidopsis lyrata HOM05D000240 ORTHO05D002608 7.6e-21 105.5 353 30.0
Carub.0002s0589 Capsella rubella HOM05D000240 ORTHO05D002608 3.0e-17 93.6 346 30.3
Gohir.A02G080300 Gossypium hirsutum HOM05D000240 ORTHO05D002608 3.9e-17 93.2 203 33.0
ATR0739G054 Amborella trichopoda HOM05D000240 ORTHO05D002608 5.1e-17 92.8 308 29.2
CDE01G0603 Ceratophyllum demersum HOM05D000240 ORTHO05D002608 1.1e-16 91.7 299 26.4
unitig_26.g9868 Utricularia gibba HOM05D000240 ORTHO05D002608 1.9e-16 90.9 309 27.8
BcaB04g20213 Brassica carinata HOM05D000240 ORTHO05D002608 2.1e-15 87.4 312 28.2
Sed0004256 Sechium edule HOM05D000240 ORTHO05D002608 6.2e-15 85.9 332 28.3
C01p36310 Brassica napus HOM05D005471 ORTHO05D006170 1.8e-14 84.3 311 27.3
BolC1t03589H Brassica oleracea HOM05D000240 ORTHO05D002608 1.8e-14 84.3 311 27.3
Aa31LG2G10580 Aethionema arabicum HOM05D000240 ORTHO05D002608 3.4e-13 80.1 162 35.8
BcaC06g31787 Brassica carinata HOM05D000240 ORTHO05D002608 3.8e-12 76.6 251 27.9


User provided reference genes

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