Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0023222 Lotus japonicus HOM05D000240 ORTHO05D013261 1.1e-43 179.5 86 100.0
Phvul.009G004100 Phaseolus vulgaris HOM05D000240 ORTHO05D001153 6.6e-12 73.9 73 57.5
Glyma.11G112700 Glycine max HOM05D000240 ORTHO05D001153 1.5e-11 72.8 73 56.2
MD05G1058100 Malus domestica HOM05D000240 ORTHO05D001153 1.5e-11 72.8 73 56.2
MD10G1065900 Malus domestica HOM05D000240 ORTHO05D001153 1.5e-11 72.8 73 56.2
Prupe.8G087800 Prunus persica HOM05D000240 ORTHO05D001153 1.5e-11 72.8 73 56.2
Ca_15343_v3 Cicer arietinum L. HOM05D000240 ORTHO05D001153 1.9e-11 72.4 73 56.2
Glyma.06G009000 Glycine max HOM05D000240 ORTHO05D001153 1.9e-11 72.4 73 54.8
arahy.Tifrunner.gnm1.ann1.538NCA Arachis hypogaea HOM05D000240 ORTHO05D001153 2.5e-11 72.0 73 56.2
arahy.Tifrunner.gnm1.ann1.P086Q7 Arachis hypogaea HOM05D000240 ORTHO05D001153 2.5e-11 72.0 73 56.2
Ciclev10027716m.g Citrus clementina HOM05D000240 ORTHO05D001153 2.5e-11 72.0 73 56.2
CANSAT11G1038 Cannabis sativa HOM05D000240 ORTHO05D001153 4.2e-11 71.2 73 54.8
Glyma.04G009100 Glycine max HOM05D000240 ORTHO05D001153 4.2e-11 71.2 73 54.8
TPR.G16212 Trifolium pratense HOM05D000240 ORTHO05D001153 4.2e-11 71.2 73 54.8
VMungo1309G1100 Vigna mungo HOM05D000240 ORTHO05D001153 4.2e-11 71.2 73 54.8
Cfa005076 Carpinus fangiana HOM05D000240 ORTHO05D001153 5.5e-11 70.9 73 54.8
Haze_02306 Corylus avellana HOM05D000240 ORTHO05D001153 5.5e-11 70.9 73 54.8
Phvul.011G040700 Phaseolus vulgaris HOM05D000240 ORTHO05D001153 5.5e-11 70.9 73 54.8
VMungo1127G2069 Vigna mungo HOM05D000240 ORTHO05D001153 5.5e-11 70.9 73 54.8
Psat7g182360 Pisum sativum HOM05D000240 ORTHO05D001153 7.2e-11 70.5 73 53.4
CSS0018000 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D001153 9.5e-11 70.1 73 56.2
Lalb_Chr23g0265221 Lupinus albus HOM05D000240 ORTHO05D001153 9.5e-11 70.1 73 53.4
Medtr4g071210 Medicago truncatula HOM05D000240 ORTHO05D001153 9.5e-11 70.1 73 53.4
Atru.chr5.3112 Acer truncatum HOM05D000240 ORTHO05D001153 1.2e-10 69.7 56 60.7
Cpa.g.sc150.41 Carica papaya HOM05D000240 ORTHO05D001153 1.6e-10 69.3 73 53.4
CiPaw.06G130700 Carya illinoinensis HOM05D000240 ORTHO05D001153 1.6e-10 69.3 73 54.8
COL.COLO4_26016 Corchorus olitorius HOM05D000240 ORTHO05D001153 1.6e-10 69.3 73 53.4
Lj1g0006393 Lotus japonicus HOM05D000240 ORTHO05D001153 1.6e-10 69.3 73 54.8
Medtr3g117330 Medicago truncatula HOM05D000240 ORTHO05D001153 1.6e-10 69.3 73 54.8
Psat5g003640 Pisum sativum HOM05D000240 ORTHO05D001153 1.6e-10 69.3 73 54.8
TPR.G32177 Trifolium pratense HOM05D000240 ORTHO05D001153 1.6e-10 69.3 73 54.8
Aqoxy6G02405 Aquilegia oxysepala HOM05D000240 ORTHO05D001153 2.1e-10 68.9 73 54.8
arahy.Tifrunner.gnm1.ann1.DN52HN Arachis hypogaea HOM05D000240 ORTHO05D001153 2.1e-10 68.9 73 53.4
arahy.Tifrunner.gnm1.ann1.VG9BQH Arachis hypogaea HOM05D000240 ORTHO05D001153 2.1e-10 68.9 73 53.4
CiPaw.05G071900 Carya illinoinensis HOM05D000240 ORTHO05D001153 2.1e-10 68.9 73 53.4
Gohir.A13G031200 Gossypium hirsutum HOM05D000240 ORTHO05D001153 2.1e-10 68.9 56 58.9
Gorai.013G033200 Gossypium raimondii HOM05D000240 ORTHO05D001153 2.8e-10 68.6 56 58.9
Lalb_Chr01g0002261 Lupinus albus HOM05D000240 ORTHO05D001153 2.8e-10 68.6 56 58.9
Potri.009G122100 Populus trichocarpa HOM05D000240 ORTHO05D001153 2.8e-10 68.6 73 53.4
Sabra09G0094300 Salix brachista HOM05D000240 ORTHO05D001153 2.8e-10 68.6 73 53.4
Manes.04G085200 Manihot esculenta HOM05D000240 ORTHO05D001153 3.6e-10 68.2 73 53.4
Potri.004G161100 Populus trichocarpa HOM05D000240 ORTHO05D001153 3.6e-10 68.2 73 53.4
Ca_20920_v3 Cicer arietinum L. HOM05D000240 ORTHO05D001153 4.7e-10 67.8 56 58.9
Thecc.02G077900 Theobroma cacao HOM05D000240 ORTHO05D001153 4.7e-10 67.8 73 52.1
Actinidia27860 Actinidia chinensis HOM05D000240 ORTHO05D001153 6.1e-10 67.4 73 53.4
MSTRG.20054 Avicennia marina HOM05D000240 ORTHO05D001153 6.1e-10 67.4 73 53.4
Cc02_g17060 Coffea canephora HOM05D000240 ORTHO05D001153 6.1e-10 67.4 73 52.1
Gohir.D04G165900 Gossypium hirsutum HOM05D000240 ORTHO05D001153 6.1e-10 67.4 73 50.7
QL11p045641 Quercus lobata HOM05D000240 ORTHO05D001153 6.1e-10 67.4 73 53.4
Gohir.D13G029200 Gossypium hirsutum HOM05D000240 ORTHO05D001153 8.0e-10 67.0 56 57.1
Gorai.012G154300 Gossypium raimondii HOM05D000240 ORTHO05D001153 8.0e-10 67.0 56 57.1
Solyc11g044880.3 Solanum lycopersicum HOM05D000240 ORTHO05D001153 8.0e-10 67.0 73 50.7
Sopen11g020380 Solanum pennellii HOM05D000240 ORTHO05D001153 8.0e-10 67.0 73 50.7
TAR381G1096 Trochodendron aralioides HOM05D000240 ORTHO05D001153 8.0e-10 67.0 73 53.4
Eucgr.I01311 Eucalyptus grandis HOM05D000240 ORTHO05D001153 1.0e-09 66.6 73 52.1
Gohir.A04G123800 Gossypium hirsutum HOM05D000240 ORTHO05D001153 1.0e-09 66.6 56 57.1
Lj3g0019992 Lotus japonicus HOM05D000240 ORTHO05D001153 1.0e-09 66.6 73 52.1
Lalb_Chr03g0025401 Lupinus albus HOM05D000240 ORTHO05D001153 1.0e-09 66.6 74 50.0
Manes.11G088000 Manihot esculenta HOM05D000240 ORTHO05D001153 1.0e-09 66.6 73 53.4
Nitab4.5_0005128g0010 Nicotiana tabacum HOM05D000240 ORTHO05D001153 1.0e-09 66.6 73 52.1
PGR142G1203 Punica granatum HOM05D000240 ORTHO05D001153 1.0e-09 66.6 73 52.1
Dinv23473 Davidia involucrata HOM05D000240 ORTHO05D001153 1.4e-09 66.2 73 52.1
Duzib052G0374 Durio zibethinus HOM05D000240 ORTHO05D001153 1.4e-09 66.2 56 58.9
Duzib132G0039 Durio zibethinus HOM05D000240 ORTHO05D001153 1.4e-09 66.2 56 58.9
Nn5g29194 Nelumbo nucifera HOM05D000240 ORTHO05D001153 1.4e-09 66.2 73 52.1
Nitab4.5_0001317g0090 Nicotiana tabacum HOM05D000240 ORTHO05D001153 1.4e-09 66.2 73 50.7
Peaxi162Scf00003g00717 Petunia axillaris HOM05D000240 ORTHO05D001153 1.4e-09 66.2 73 52.1
Migut.N01271 Erythranthe guttata HOM05D000240 ORTHO05D001153 1.8e-09 65.9 73 50.7
Sabra04G0107800 Salix brachista HOM05D000240 ORTHO05D001153 1.8e-09 65.9 56 58.9
SGA_v2.0_scaffold58G20477 Striga asiatica HOM05D000240 ORTHO05D001153 1.8e-09 65.9 73 50.7
GSVIVG01024203001 Vitis vinifera HOM05D000240 ORTHO05D001153 1.8e-09 65.9 73 53.4
ClCG11G004000 Citrullus lanatus HOM05D000240 ORTHO05D001153 2.3e-09 65.5 56 57.1
MELO3C023342.2 Cucumis melo HOM05D000240 ORTHO05D001153 2.3e-09 65.5 56 57.1
CsaV3_2G015170 Cucumis sativus L. HOM05D000240 ORTHO05D001153 2.3e-09 65.5 56 57.1
Hma1.2p1_0066F.1_g035890 Hydrangea macrophylla HOM05D000240 ORTHO05D001153 2.3e-09 65.5 73 53.4
MSTRG.16838 Avicennia marina HOM05D000240 ORTHO05D001153 3.0e-09 65.1 73 50.7
Duzib248G1652 Durio zibethinus HOM05D000240 ORTHO05D001153 3.0e-09 65.1 56 57.1
ECA240G2203 Erigeron canadensis HOM05D000240 ORTHO05D001153 3.0e-09 65.1 73 49.3
Solyc10g054080.3 Solanum lycopersicum HOM05D000240 ORTHO05D001153 3.0e-09 65.1 73 50.7
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 3.0e-09 65.1 46 67.4
Dinv42014 Davidia involucrata HOM05D000240 ORTHO05D001153 5.2e-09 64.3 73 54.8
FvH4_2g10080 Fragaria vesca HOM05D000240 ORTHO05D001153 5.2e-09 64.3 73 50.7
FAN20G1397 Fragaria x ananassa HOM05D000240 ORTHO05D001153 5.2e-09 64.3 73 50.7
FAN24G1691 Fragaria x ananassa HOM05D000240 ORTHO05D001153 5.2e-09 64.3 73 50.7
MBI05_g10541_MAGBIO Magnolia biondii HOM05D000240 ORTHO05D001153 5.2e-09 64.3 73 50.7
Nitab4.5_0000589g0030 Nicotiana tabacum HOM05D000240 ORTHO05D001153 5.2e-09 64.3 46 67.4
Nitab4.5_0003006g0010 Nicotiana tabacum HOM05D000240 ORTHO05D001153 5.2e-09 64.3 46 67.4
Sed0002918 Sechium edule HOM05D000240 ORTHO05D001153 5.2e-09 64.3 56 57.1
Sopen10g023930 Solanum pennellii HOM05D000240 ORTHO05D001153 5.2e-09 64.3 73 50.7
Nitab4.5_0002723g0070 Nicotiana tabacum HOM05D000240 ORTHO05D001153 6.8e-09 63.9 73 49.3
vmacro17435 Vaccinium macrocarpon HOM05D000240 ORTHO05D001153 6.8e-09 63.9 73 52.1
Lsat_1_v5_gn_9_107600 Lactuca sativa HOM05D000240 ORTHO05D001153 8.9e-09 63.5 73 49.3
Nitab4.5_0011132g0010 Nicotiana tabacum HOM05D000240 ORTHO05D001153 8.9e-09 63.5 73 47.9
Peaxi162Scf00684g00222 Petunia axillaris HOM05D000240 ORTHO05D001153 8.9e-09 63.5 56 57.1
Rhsim05G0069000 Rhododendron simsii HOM05D000240 ORTHO05D001153 8.9e-09 63.5 56 57.1
CSS0029478 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D001153 1.2e-08 63.2 56 57.1
CAN.G1.58 Capsicum annuum HOM05D000240 ORTHO05D001153 1.2e-08 63.2 73 49.3
CDE08G0769 Ceratophyllum demersum HOM05D000240 ORTHO05D001153 1.2e-08 63.2 56 57.1
ClCG02G004660 Citrullus lanatus HOM05D000240 ORTHO05D001153 1.2e-08 63.2 73 50.7
SGA_v2.0_scaffold32G13206 Striga asiatica HOM05D000240 ORTHO05D001153 1.2e-08 63.2 55 56.4
TAR376G0052 Trochodendron aralioides HOM05D000240 ORTHO05D001153 1.2e-08 63.2 73 50.7
TAR628G1129 Trochodendron aralioides HOM05D000240 ORTHO05D001153 1.2e-08 63.2 73 50.7
Ah.01g006090 Amaranthus hybridus HOM05D000240 ORTHO05D001153 1.5e-08 62.8 56 55.4
Sed0005078 Sechium edule HOM05D000240 ORTHO05D001153 1.5e-08 62.8 73 50.7
Migut.B00190 Erythranthe guttata HOM05D000240 ORTHO05D001153 2.0e-08 62.4 73 49.3
FAN15G0690 Fragaria x ananassa HOM05D000240 ORTHO05D001153 2.0e-08 62.4 73 49.3
FAN27G1574 Fragaria x ananassa HOM05D000240 ORTHO05D001153 2.0e-08 62.4 73 50.7
Peaxi162Scf00016g00239 Petunia axillaris HOM05D000240 ORTHO05D001153 2.0e-08 62.4 46 65.2
Sed0023290 Sechium edule HOM05D000240 ORTHO05D001153 2.0e-08 62.4 73 50.7
Ah.01g018940 Amaranthus hybridus HOM05D000240 ORTHO05D001153 2.6e-08 62.0 73 49.3
CsaV3_7G000280 Cucumis sativus L. HOM05D000240 ORTHO05D001153 2.6e-08 62.0 73 50.7
MELO3C013429.2 Cucumis melo HOM05D000240 ORTHO05D001153 3.4e-08 61.6 73 49.3
Hma1.2p1_0851F.1_g228305 Hydrangea macrophylla HOM05D000240 ORTHO05D001153 3.4e-08 61.6 73 50.7
Lj9C381G11 Lonicera japonica HOM05D000240 ORTHO05D001153 3.4e-08 61.6 73 49.3
Oeu008576.1 Olea europaea HOM05D000240 ORTHO05D001153 3.4e-08 61.6 73 46.6
Sc08g0000780 Simmondsia chinensis HOM05D000240 ORTHO05D001153 3.4e-08 61.6 46 63.0
MSTRG.5420 Avicennia marina HOM05D000240 ORTHO05D001153 4.4e-08 61.2 56 53.6
HanXRQChr16g0506381 Helianthus annuus HOM05D000240 ORTHO05D001153 4.4e-08 61.2 73 46.6
Sopen01g052350 Solanum pennellii HOM05D000240 ORTHO05D001153 4.4e-08 61.2 46 63.0
Nn6g32210 Nelumbo nucifera HOM05D000240 ORTHO05D001153 5.7e-08 60.8 73 49.3
RcHm_v2.0_Chr6g0267011 Rosa chinensis HOM05D000240 ORTHO05D001153 5.7e-08 60.8 73 49.3
Hund00225 Selenicereus undatus HOM05D000240 ORTHO05D001153 5.7e-08 60.8 46 63.0
Solyc01g110190.4 Solanum lycopersicum HOM05D000240 ORTHO05D001153 5.7e-08 60.8 46 63.0
THA.LOC104804119 Tarenaya hassleriana HOM05D000240 ORTHO05D001153 5.7e-08 60.8 56 53.6
TWI75G0793 Tripterygium wilfordii HOM05D000240 ORTHO05D001153 5.7e-08 60.8 56 55.4
CAN.G170.85 Capsicum annuum HOM05D000240 ORTHO05D001153 7.5e-08 60.5 46 63.0
SalBow6G2463 Salvia bowleyana HOM05D000240 ORTHO05D001153 7.5e-08 60.5 73 50.7
Hund06267 Selenicereus undatus HOM05D000240 ORTHO05D001153 7.5e-08 60.5 46 58.7
ECA236G3168 Erigeron canadensis HOM05D000240 ORTHO05D001153 9.8e-08 60.1 73 47.9
Gohir.A01G003700 Gossypium hirsutum HOM05D000240 ORTHO05D001153 9.8e-08 60.1 73 47.9
Gorai.002G004600 Gossypium raimondii HOM05D000240 ORTHO05D001153 9.8e-08 60.1 73 47.9
HanXRQChr04g0127671 Helianthus annuus HOM05D000240 ORTHO05D001153 9.8e-08 60.1 73 46.6
Lsat_1_v5_gn_7_92061 Lactuca sativa HOM05D000240 ORTHO05D001153 9.8e-08 60.1 73 47.9
THA.LOC104807759 Tarenaya hassleriana HOM05D000240 ORTHO05D001153 9.8e-08 60.1 73 47.9
Gohir.D01G003701 Gossypium hirsutum HOM05D000240 ORTHO05D001153 1.3e-07 59.7 73 46.6
Lj5C191G7 Lonicera japonica HOM05D000240 ORTHO05D001153 1.3e-07 59.7 73 46.6
AL4G10550 Arabidopsis lyrata HOM05D000240 ORTHO05D001153 1.7e-07 59.3 73 47.9
AT2G21380 Arabidopsis thaliana HOM05D000240 ORTHO05D001153 1.7e-07 59.3 73 47.9
TAR623G0744 Trochodendron aralioides HOM05D000240 ORTHO05D013261 1.7e-07 59.3 46 60.9
Zm00001eb043680 Zea mays HOM05D000240 ORTHO05D001153 1.7e-07 59.3 73 47.9
HPP92_015023 Vanilla planifolia HOM05D000240 ORTHO05D001153 2.2e-07 58.9 56 51.8
ATR0661G585 Amborella trichopoda HOM05D000240 ORTHO05D001153 3.7e-07 58.2 46 60.9
Carub.0004s0041 Capsella rubella HOM05D000240 ORTHO05D001153 3.7e-07 58.2 73 46.6
DCAR_028950 Daucus carota HOM05D000240 ORTHO05D001153 3.7e-07 58.2 73 46.6
Sc18g0005290 Simmondsia chinensis HOM05D000240 ORTHO05D001153 3.7e-07 58.2 45 57.8
BcaNung06380 Brassica carinata HOM05D000240 ORTHO05D001153 6.3e-07 57.4 74 43.2
C08p41590 Brassica napus HOM05D000240 ORTHO05D001153 6.3e-07 57.4 74 43.2
BolC8t51721H Brassica oleracea HOM05D000240 ORTHO05D001153 6.3e-07 57.4 74 43.2
BraA09t41217Z Brassica rapa HOM05D000240 ORTHO05D001153 6.3e-07 57.4 74 43.2
Thhalv10000024m.g Eutrema salsugineum HOM05D000240 ORTHO05D001153 6.3e-07 57.4 73 46.6
SEGI_29493 Sequoiadendron giganteum HOM05D000240 ORTHO05D013261 6.3e-07 57.4 56 51.8
THA.LOC104824800 Tarenaya hassleriana HOM05D000240 ORTHO05D001153 6.3e-07 57.4 73 45.2
BcaNung01285 Brassica carinata HOM05D000240 ORTHO05D001153 8.3e-07 57.0 73 45.2
Os10g0512800 Oryza sativa ssp. japonica HOM05D000240 ORTHO05D001153 8.3e-07 57.0 73 45.2
TWI79G0940 Tripterygium wilfordii HOM05D000240 ORTHO05D001153 8.3e-07 57.0 56 51.8
BcaC01g00275 Brassica carinata HOM05D000240 ORTHO05D001153 1.1e-06 56.6 56 51.8
A06p48710 Brassica napus HOM05D000240 ORTHO05D001153 1.1e-06 56.6 56 51.8
A08p23880 Brassica napus HOM05D000240 ORTHO05D001153 1.1e-06 56.6 56 51.8
C03p77550 Brassica napus HOM05D000240 ORTHO05D001153 1.1e-06 56.6 56 51.8
BolC3t20011H Brassica oleracea HOM05D000240 ORTHO05D001153 1.1e-06 56.6 56 51.8
BraA06t27737Z Brassica rapa HOM05D000240 ORTHO05D001153 1.1e-06 56.6 56 51.8
BraA08t34340Z Brassica rapa HOM05D000240 ORTHO05D001153 1.1e-06 56.6 56 51.8
Sp7g36780 Schrenkiella parvula HOM05D000240 ORTHO05D001153 1.1e-06 56.6 56 51.8
BcaB03g12238 Brassica carinata HOM05D000240 ORTHO05D001153 1.4e-06 56.2 56 51.8
CARHR112260 Cardamine hirsuta HOM05D000240 ORTHO05D001153 1.4e-06 56.2 73 45.2
Sp4g00550 Schrenkiella parvula HOM05D000240 ORTHO05D001153 1.4e-06 56.2 73 45.2
DCAR_003649 Daucus carota HOM05D000240 ORTHO05D001153 1.8e-06 55.8 73 46.6
EL10Ac9g21667 Beta vulgaris HOM05D000240 ORTHO05D001153 2.4e-06 55.5 73 46.6
BcaNung01942 Brassica carinata HOM05D000240 ORTHO05D001153 2.4e-06 55.5 56 50.0
C07p63370 Brassica napus HOM05D000240 ORTHO05D001153 2.4e-06 55.5 56 50.0
BolC7t46748H Brassica oleracea HOM05D000240 ORTHO05D001153 2.4e-06 55.5 56 50.0
AUR62010414 Chenopodium quinoa HOM05D000240 ORTHO05D001153 2.4e-06 55.5 47 61.7
AUR62016802 Chenopodium quinoa HOM05D000240 ORTHO05D001153 2.4e-06 55.5 47 61.7
unitig_8.g3247 Utricularia gibba HOM05D000240 ORTHO05D001153 2.4e-06 55.5 56 50.0
AT4G39050 Arabidopsis thaliana HOM05D000240 ORTHO05D001153 3.1e-06 55.1 80 41.2
Aa31LG6G16200 Aethionema arabicum HOM05D000240 ORTHO05D001153 4.1e-06 54.7 67 43.3
Oeu055622.1 Olea europaea HOM05D000240 ORTHO05D001153 4.1e-06 54.7 41 63.4
Carub.0007s0092 Capsella rubella HOM05D000240 ORTHO05D001153 5.4e-06 54.3 56 50.0
AL7G10990 Arabidopsis lyrata HOM05D000240 ORTHO05D001153 7.0e-06 53.9 56 50.0
Thhalv10024289m.g Eutrema salsugineum HOM05D000240 ORTHO05D001153 7.0e-06 53.9 56 50.0
Mapoly0019s0177 Marchantia polymorpha HOM05D000240 ORTHO05D001153 9.2e-06 53.5 82 42.7


User provided reference genes

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