Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0022978 Lotus japonicus HOM05D006222 ORTHO05D007677 6.1e-122 441.0 224 100.0
TPR.G8895 Trifolium pratense HOM05D006222 ORTHO05D007677 3.3e-83 312.4 236 70.3
Ca_11418_v3 Cicer arietinum L. HOM05D006222 ORTHO05D007677 2.1e-82 309.7 223 72.6
Lalb_Chr06g0164621 Lupinus albus HOM05D006222 ORTHO05D007677 2.4e-81 306.2 224 71.9
Medtr1g116820 Medicago truncatula HOM05D006222 ORTHO05D007677 5.3e-81 305.1 220 71.4
Psat0s4086g0080 Pisum sativum HOM05D006222 ORTHO05D007677 2.4e-78 296.2 223 69.1
arahy.Tifrunner.gnm1.ann1.VRQF1E Arachis hypogaea HOM05D006222 ORTHO05D007677 4.2e-78 295.4 223 69.1
arahy.Tifrunner.gnm1.ann1.S0FJR3 Arachis hypogaea HOM05D006222 ORTHO05D007677 7.1e-78 294.7 225 68.4
Glyma.20G248400 Glycine max HOM05D006222 ORTHO05D007677 2.4e-73 279.6 220 66.8
CiPaw.02G058300 Carya illinoinensis HOM05D006222 ORTHO05D007677 2.9e-71 272.7 215 64.7
Cfa008558 Carpinus fangiana HOM05D006222 ORTHO05D007677 1.6e-69 266.9 214 62.6
RcHm_v2.0_Chr4g0409281 Rosa chinensis HOM05D006222 ORTHO05D007677 2.1e-69 266.5 218 63.3
Prupe.1G180600 Prunus persica HOM05D006222 ORTHO05D007677 3.5e-69 265.8 215 63.3
Duzib268G0300 Durio zibethinus HOM05D006222 ORTHO05D007677 3.0e-68 262.7 214 62.1
MD04G1034000 Malus domestica HOM05D006222 ORTHO05D007677 3.9e-68 262.3 218 63.3
Gohir.A10G136100 Gossypium hirsutum HOM05D006222 ORTHO05D007677 6.7e-68 261.5 210 63.8
Gohir.D10G130500 Gossypium hirsutum HOM05D006222 ORTHO05D007677 6.7e-68 261.5 211 64.0
Gorai.011G144300 Gossypium raimondii HOM05D006222 ORTHO05D007677 8.7e-68 261.2 211 64.0
VMungo0720G0284 Vigna mungo HOM05D006222 ORTHO05D007677 4.3e-67 258.8 216 65.3
Eucgr.A00219 Eucalyptus grandis HOM05D006222 ORTHO05D007677 5.6e-67 258.5 214 60.3
Phvul.007G002100 Phaseolus vulgaris HOM05D006222 ORTHO05D007677 7.4e-67 258.1 220 66.4
PGR083G0744 Punica granatum HOM05D006222 ORTHO05D007677 9.6e-67 257.7 214 61.2
Rhsim09G0036800 Rhododendron simsii HOM05D006222 ORTHO05D007677 1.3e-66 257.3 208 61.5
Thecc.04G181000 Theobroma cacao HOM05D006222 ORTHO05D007677 2.1e-66 256.5 204 63.7
SalBow3G0382 Salvia bowleyana HOM05D006222 ORTHO05D007677 3.7e-66 255.8 215 59.1
TWI63G0082 Tripterygium wilfordii HOM05D006222 ORTHO05D007677 3.7e-66 255.8 223 59.6
FvH4_4g11840 Fragaria vesca HOM05D006222 ORTHO05D007677 8.2e-66 254.6 212 61.3
CANSAT78G1479 Cannabis sativa HOM05D006222 ORTHO05D007677 1.4e-65 253.8 215 61.9
COL.COLO4_07298 Corchorus olitorius HOM05D006222 ORTHO05D007677 1.8e-65 253.4 214 59.8
FAN12G2611 Fragaria x ananassa HOM05D006222 ORTHO05D007677 6.9e-65 251.5 225 58.2
GSVIVG01031673001 Vitis vinifera HOM05D006222 ORTHO05D007677 6.9e-65 251.5 222 56.3
ClCG07G016700 Citrullus lanatus HOM05D006222 ORTHO05D007677 9.0e-65 251.1 212 62.3
Manes.11G113101 Manihot esculenta HOM05D006222 ORTHO05D007677 9.0e-65 251.1 220 57.7
FAN12G2296 Fragaria x ananassa HOM05D006222 ORTHO05D007677 1.5e-64 250.4 212 60.8
Sed0019288 Sechium edule HOM05D006222 ORTHO05D007677 2.0e-64 250.0 216 62.0
CsaV3_4G003830 Cucumis sativus L. HOM05D006222 ORTHO05D007677 2.6e-64 249.6 211 61.6
Duzib212G0460 Durio zibethinus HOM05D006222 ORTHO05D007677 2.6e-64 249.6 220 58.2
Sabra14G0113700 Salix brachista HOM05D006222 ORTHO05D007677 4.5e-64 248.8 230 55.7
DCAR_027540 Daucus carota HOM05D006222 ORTHO05D007677 5.8e-64 248.4 210 59.5
SGA_v2.0_scaffold31G12583 Striga asiatica HOM05D006222 ORTHO05D007677 5.8e-64 248.4 219 58.0
Oeu034479.1 Olea europaea HOM05D006222 ORTHO05D007677 1.3e-63 247.3 209 61.7
CSS0002349 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 2.2e-63 246.5 202 62.4
Sp4g25240 Schrenkiella parvula HOM05D006222 ORTHO05D007677 2.2e-63 246.5 215 57.2
Thhalv10017033m.g Eutrema salsugineum HOM05D006222 ORTHO05D007677 2.9e-63 246.1 215 56.7
Atru.chr3.1674 Acer truncatum HOM05D006222 ORTHO05D007677 3.8e-63 245.7 215 60.0
CSS0005997 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 6.5e-63 245.0 202 61.4
Ciclev10021532m.g Citrus clementina HOM05D006222 ORTHO05D007677 6.5e-63 245.0 202 63.9
AL4G41770 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 8.4e-63 244.6 214 57.0
Aa31LG1G24920 Aethionema arabicum HOM05D006222 ORTHO05D007677 1.1e-62 244.2 224 56.7
MSTRG.24605 Avicennia marina HOM05D006222 ORTHO05D007677 1.9e-62 243.4 211 56.4
CARHR138180 Cardamine hirsuta HOM05D006222 ORTHO05D007677 2.5e-62 243.0 214 57.0
THA.LOC104804896 Tarenaya hassleriana HOM05D006222 ORTHO05D007677 2.5e-62 243.0 206 59.2
AL401U10010 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 3.2e-62 242.7 214 56.5
A05p03600 Brassica napus HOM05D006222 ORTHO05D007677 7.1e-62 241.5 215 55.3
BcaC02g12413 Brassica carinata HOM05D006222 ORTHO05D007677 1.2e-61 240.7 215 55.3
BraA05t19346Z Brassica rapa HOM05D006222 ORTHO05D007677 1.2e-61 240.7 215 55.8
AT2G43110 Arabidopsis thaliana HOM05D006222 ORTHO05D007677 3.5e-61 239.2 203 57.6
Sc07g0007090 Simmondsia chinensis HOM05D006222 ORTHO05D007677 3.5e-61 239.2 211 55.0
FAN17G0755 Fragaria x ananassa HOM05D006222 ORTHO05D007677 4.6e-61 238.8 191 63.9
C04p04200 Brassica napus HOM05D006222 ORTHO05D007677 6.0e-61 238.4 215 55.3
BolC4t22057H Brassica oleracea HOM05D006222 ORTHO05D007677 6.0e-61 238.4 215 55.3
Carub.0004s2559 Capsella rubella HOM05D006222 ORTHO05D007677 7.9e-61 238.0 203 57.6
EL10Ac5g11641 Beta vulgaris HOM05D006222 ORTHO05D007677 1.0e-60 237.7 199 55.3
CDE05G0624 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 8.7e-60 234.6 204 57.4
Cc03_g10460 Coffea canephora HOM05D006222 ORTHO05D007677 1.1e-59 234.2 203 58.1
PSO357G0657 Papaver somniferum HOM05D006222 ORTHO05D007677 1.1e-59 234.2 210 55.7
Hund13303 Selenicereus undatus HOM05D006222 ORTHO05D007677 1.1e-59 234.2 208 54.8
BcaNung03540 Brassica carinata HOM05D006222 ORTHO05D007677 1.9e-59 233.4 215 54.9
MELO3C017672.2 Cucumis melo HOM05D006222 ORTHO05D007677 2.5e-59 233.0 240 54.6
Aqoxy5G00038 Aquilegia oxysepala HOM05D006222 ORTHO05D007677 4.3e-59 232.3 202 57.9
PGSC0003DMG400013073 Solanum tuberosum HOM05D006222 ORTHO05D007677 4.3e-59 232.3 200 59.0
HanXRQChr14g0432081 Helianthus annuus HOM05D006222 ORTHO05D007677 5.7e-59 231.9 217 53.9
Lj3P863T15 Lonicera japonica HOM05D006222 ORTHO05D007677 7.4e-59 231.5 202 59.4
PSO170G0570 Papaver somniferum HOM05D006222 ORTHO05D007677 7.4e-59 231.5 215 54.4
Migut.N00436 Erythranthe guttata HOM05D006222 ORTHO05D007677 1.3e-58 230.7 203 56.7
Sopen05g032350 Solanum pennellii HOM05D006222 ORTHO05D007677 2.8e-58 229.6 200 58.0
CDE05G2371 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 1.4e-57 227.3 204 56.4
Ah.12g062130 Amaranthus hybridus HOM05D006222 ORTHO05D007677 2.4e-57 226.5 202 56.4
TAR362G1090 Trochodendron aralioides HOM05D006222 ORTHO05D007677 1.5e-56 223.8 202 55.4
Hma1.2p1_1477F.1_g285900 Hydrangea macrophylla HOM05D006222 ORTHO05D007677 2.6e-56 223.0 183 61.2
ECA232G0640 Erigeron canadensis HOM05D006222 ORTHO05D007677 4.5e-56 222.2 212 53.3
Nn3g20171 Nelumbo nucifera HOM05D006222 ORTHO05D007677 2.2e-55 219.9 200 56.0
ATR1089G038 Amborella trichopoda HOM05D006222 ORTHO05D007677 1.9e-54 216.9 202 56.9
Peaxi162Scf00423g00727 Petunia axillaris HOM05D006222 ORTHO05D007677 6.1e-53 211.8 182 58.8
Potri.014G150100 Populus trichocarpa HOM05D006222 ORTHO05D007677 1.4e-52 210.7 180 62.2
Os04g0348100 Oryza sativa ssp. japonica HOM05D006222 ORTHO05D007677 8.8e-52 208.0 212 50.5
PGSC0003DMG400023306 Solanum tuberosum HOM05D006222 ORTHO05D007677 3.3e-51 206.1 159 62.9
Actinidia32943 Actinidia chinensis HOM05D006222 ORTHO05D007677 5.7e-51 205.3 183 54.6
vmacro22720 Vaccinium macrocarpon HOM05D006222 ORTHO05D007677 5.7e-51 205.3 186 59.7
FvH4_6g25320 Fragaria vesca HOM05D006222 ORTHO05D007677 9.7e-51 204.5 212 53.3
CAN.G1310.8 Capsicum annuum HOM05D006222 ORTHO05D007677 4.8e-50 202.2 165 60.6
Ah.12g060860 Amaranthus hybridus HOM05D006222 ORTHO05D007677 1.2e-48 197.6 201 50.7
Dinv22662 Davidia involucrata HOM05D006222 ORTHO05D007677 4.5e-48 195.7 212 52.4
Lsat_1_v5_gn_2_38021 Lactuca sativa HOM05D006222 ORTHO05D007677 6.5e-47 191.8 175 57.1
SMO331G0016 Selaginella moellendorffii HOM05D006222 ORTHO05D007677 1.9e-46 190.3 199 48.2
Solyc05g053880.4 Solanum lycopersicum HOM05D006222 ORTHO05D007677 2.1e-45 186.8 175 56.6
unitig_578.g15951 Utricularia gibba HOM05D006222 ORTHO05D007677 5.7e-43 178.7 231 45.5
Zm00001eb086320 Zea mays HOM05D006222 ORTHO05D007677 8.2e-42 174.9 171 53.8
Mapoly0037s0098 Marchantia polymorpha HOM05D006222 ORTHO05D007677 1.9e-38 163.7 202 42.1
AUR62029129 Chenopodium quinoa HOM05D006222 ORTHO05D007677 3.0e-36 156.4 217 40.1
Pp3c6_17250 Physcomitrium patens HOM05D006222 ORTHO05D007677 3.0e-36 156.4 196 40.3
Actinidia35881 Actinidia chinensis HOM05D006222 ORTHO05D007677 5.2e-36 155.6 157 51.0
QL10p043792 Quercus lobata HOM05D006222 ORTHO05D007677 1.3e-34 151.0 93 75.3
QL10p047312 Quercus lobata HOM05D006222 ORTHO05D007677 2.8e-34 149.8 93 75.3
CBR_g19109 Chara braunii HOM05D006222 ORTHO05D007677 1.1e-33 147.9 214 37.9
FAN05G2938 Fragaria x ananassa HOM05D006222 ORTHO05D007677 1.1e-33 147.9 143 55.9
RhsimUnG0147000 Rhododendron simsii HOM05D006222 ORTHO05D007677 9.1e-33 144.8 233 42.5
Haze_11067 Corylus avellana HOM05D006222 ORTHO05D007677 1.6e-32 144.1 93 67.7
Rhsim04G0094000 Rhododendron simsii HOM05D006222 ORTHO05D007677 1.1e-30 137.9 261 38.3
QL10p043789 Quercus lobata HOM05D006222 ORTHO05D007677 1.6e-29 134.0 126 58.7
QL10p047309 Quercus lobata HOM05D006222 ORTHO05D007677 1.0e-28 131.3 122 59.0
CSS0048231 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 1.7e-26 124.0 91 61.5
Nitab4.5_0000161g0130 Nicotiana tabacum HOM05D006222 ORTHO05D007677 1.7e-26 124.0 215 36.3
HPP92_024563 Vanilla planifolia HOM05D006222 ORTHO05D007677 4.1e-25 119.4 95 61.1
AUR62014992 Chenopodium quinoa HOM05D006222 ORTHO05D007677 1.2e-24 117.9 172 35.5
Eucgr.L00544 Eucalyptus grandis HOM05D006222 ORTHO05D007677 6.5e-23 112.1 123 49.6
Actinidia27187 Actinidia chinensis HOM05D006222 ORTHO05D007677 1.6e-21 107.5 139 46.8
MD13G1276400 Malus domestica HOM05D006222 ORTHO05D007677 8.8e-20 101.7 123 46.3
Nitab4.5_0007578g0020 Nicotiana tabacum HOM05D006222 ORTHO05D007677 1.5e-19 100.9 215 30.2
Haze_11066 Corylus avellana HOM05D006222 ORTHO05D007677 2.0e-16 90.5 97 55.7
Ah.12g060290 Amaranthus hybridus HOM05D006222 ORTHO05D007677 3.5e-16 89.7 59 66.1
Duzib268G0844 Durio zibethinus HOM05D006222 ORTHO05D007677 8.6e-15 85.1 98 51.0
AagrBONN_evm.TU.Sc2ySwM_362.227 Anthoceros agrestis HOM05D006222 ORTHO05D007677 1.6e-08 64.3 133 33.8
A03p23980 Brassica napus HOM05D006222 ORTHO05D007677 5.0e-07 59.3 50 50.0
SEGI_30148 Sequoiadendron giganteum HOM05D006222 ORTHO05D007677 8.6e-07 58.5 51 51.0


User provided reference genes

Program Settings