Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0022841 Lotus japonicus HOM05D006494 ORTHO05D007787 2.1e-214 748.8 390 100.0
Glyma.10G231900 Glycine max HOM05D006494 ORTHO05D007787 7.0e-69 265.4 264 61.0
Glyma.20G162200 Glycine max HOM05D006494 ORTHO05D007787 3.5e-68 263.1 261 61.3
VMungo0720G0554 Vigna mungo HOM05D006494 ORTHO05D007787 5.9e-68 262.3 268 59.3
Phvul.007G073600 Phaseolus vulgaris HOM05D006494 ORTHO05D007787 4.2e-66 256.1 262 58.4
Ca_10732_v3 Cicer arietinum L. HOM05D006494 ORTHO05D007787 3.7e-62 243.0 268 56.3
Lalb_Chr21g0305211 Lupinus albus HOM05D006494 ORTHO05D007787 1.2e-57 228.0 266 57.1
Lj5g0023125 Lotus japonicus HOM05D000003 ORTHO05D000004 1.1e-50 204.9 104 92.3
Lalb_Chr02g0144041 Lupinus albus HOM05D006494 ORTHO05D007787 1.0e-48 198.4 263 50.6
TPR.G26961 Trifolium pratense HOM05D006494 ORTHO05D007787 6.8e-48 195.7 270 49.6
arahy.Tifrunner.gnm1.ann1.HAQV4X Arachis hypogaea HOM05D006494 ORTHO05D007787 1.0e-43 181.8 254 47.6
Psat0s2528g0040 Pisum sativum HOM05D006494 ORTHO05D007787 1.0e-43 181.8 275 44.7
arahy.Tifrunner.gnm1.ann1.J3K5XQ Arachis hypogaea HOM05D006494 ORTHO05D007787 1.5e-42 177.9 254 46.9
Lj6g0001642 Lotus japonicus HOM05D000003 ORTHO05D000167 2.1e-33 147.5 104 65.4
Lj2g0019468 Lotus japonicus HOM05D000003 ORTHO05D000167 1.4e-32 144.8 104 63.5
Lj3g0000888 Lotus japonicus HOM05D027754 ORTHO05D000167 3.2e-29 133.7 98 62.2
Cfa016278 Carpinus fangiana HOM05D006494 ORTHO05D007787 4.1e-29 133.3 287 39.4
Haze_00032 Corylus avellana HOM05D006494 ORTHO05D007787 1.2e-28 131.7 288 41.0
Lj3g0008687 Lotus japonicus HOM05D027754 ORTHO05D000167 2.1e-25 120.9 94 59.6
Ciclev10005709m.g Citrus clementina HOM05D006494 ORTHO05D007787 6.8e-24 115.9 266 35.3
Lj4g0012049 Lotus japonicus HOM05D027754 ORTHO05D000167 3.4e-23 113.6 94 54.3
QL09p013118 Quercus lobata HOM05D006494 ORTHO05D007787 1.3e-22 111.7 275 36.4
Eucgr.K00289 Eucalyptus grandis HOM05D006494 ORTHO05D007787 1.7e-22 111.3 281 35.2
Thecc.04G169800 Theobroma cacao HOM05D006494 ORTHO05D007787 1.7e-22 111.3 278 37.1
Dinv28397 Davidia involucrata HOM05D006494 ORTHO05D007787 4.1e-21 106.7 273 35.9
Duzib268G1872 Durio zibethinus HOM05D006494 ORTHO05D007787 7.1e-21 105.9 275 35.6
Hma1.2p1_0327F.1_g126290 Hydrangea macrophylla HOM05D006494 ORTHO05D007787 9.2e-21 105.5 262 35.1
Lj4g0023123 Lotus japonicus HOM05D000003 ORTHO05D000004 1.2e-20 105.1 97 49.5
TWI39G0535 Tripterygium wilfordii HOM05D006494 ORTHO05D007787 1.7e-19 101.3 276 32.6
TWI23G1164 Tripterygium wilfordii HOM05D006494 ORTHO05D007787 2.3e-19 100.9 275 33.5
TAR629G2733 Trochodendron aralioides HOM05D006494 ORTHO05D007787 2.3e-19 100.9 275 38.2
Prupe.7G058200 Prunus persica HOM05D006494 ORTHO05D007787 3.9e-19 100.1 261 38.7
CiPaw.05G263300 Carya illinoinensis HOM05D006494 ORTHO05D007787 1.5e-18 98.2 257 37.0
Cpa.g.sc107.95 Carica papaya HOM05D006494 ORTHO05D007787 3.3e-18 97.1 273 34.4
Gohir.A02G091800 Gossypium hirsutum HOM05D006494 ORTHO05D007787 4.3e-18 96.7 244 35.7
MD07G1041300 Malus domestica HOM05D006494 ORTHO05D007787 4.3e-18 96.7 275 32.7
Gohir.D02G108900 Gossypium hirsutum HOM05D006494 ORTHO05D007787 5.6e-18 96.3 276 35.1
RcHm_v2.0_Chr3g0482771 Rosa chinensis HOM05D006494 ORTHO05D007787 5.6e-18 96.3 259 34.0
Rhsim09G0199800 Rhododendron simsii HOM05D006494 ORTHO05D007787 7.3e-18 95.9 281 31.0
Gohir.A10G141700 Gossypium hirsutum HOM05D006494 ORTHO05D007787 9.5e-18 95.5 271 31.7
vmacro06639 Vaccinium macrocarpon HOM05D006494 ORTHO05D007787 9.5e-18 95.5 219 34.7
Manes.06G151500 Manihot esculenta HOM05D006494 ORTHO05D007787 1.2e-17 95.1 265 34.3
Gorai.005G124800 Gossypium raimondii HOM05D006494 ORTHO05D007787 1.6e-17 94.7 275 34.2
Thecc.03G182400 Theobroma cacao HOM05D006494 ORTHO05D007787 2.8e-17 94.0 276 33.7
Duzib151G1204 Durio zibethinus HOM05D006494 ORTHO05D007787 3.6e-17 93.6 278 34.5
Lalb_Chr06g0164231 Lupinus albus HOM05D006494 ORTHO05D007787 3.6e-17 93.6 94 56.4
MD12G1079700 Malus domestica HOM05D006494 ORTHO05D007787 4.7e-17 93.2 270 35.6
Actinidia20864 Actinidia chinensis HOM05D006494 ORTHO05D007787 6.2e-17 92.8 275 33.5
Gorai.011G137900 Gossypium raimondii HOM05D006494 ORTHO05D007787 6.2e-17 92.8 273 32.2
Rhsim09G0200100 Rhododendron simsii HOM05D006494 ORTHO05D007787 2.3e-16 90.9 281 30.6
PGR142G1234 Punica granatum HOM05D006494 ORTHO05D007787 3.1e-16 90.5 278 32.7
MD14G1075900 Malus domestica HOM05D006494 ORTHO05D007787 6.8e-16 89.4 263 33.8
Gohir.D10G124800 Gossypium hirsutum HOM05D006494 ORTHO05D007787 1.5e-15 88.2 245 34.3
Manes.14G023400 Manihot esculenta HOM05D006494 ORTHO05D007787 1.5e-15 88.2 236 33.5
COL.COLO4_10079 Corchorus olitorius HOM05D006494 ORTHO05D007787 2.0e-15 87.8 271 32.1
TWI39G0536 Tripterygium wilfordii HOM05D006494 ORTHO05D007787 4.4e-15 86.7 271 32.5
Actinidia34147 Actinidia chinensis HOM05D006494 ORTHO05D007787 7.6e-15 85.9 271 32.1
CsaV3_3G017370 Cucumis sativus L. HOM05D006494 ORTHO05D007787 7.6e-15 85.9 267 31.5
CSS0049923 Camellia sinensis var. sinensis HOM05D006494 ORTHO05D007787 1.7e-14 84.7 160 37.5
ClCG05G008270 Citrullus lanatus HOM05D006494 ORTHO05D007787 2.2e-14 84.3 264 33.7
arahy.Tifrunner.gnm1.ann1.78PZ7R Arachis hypogaea HOM05D062081 ORTHO05D007787 2.9e-14 84.0 247 33.2
MELO3C018639.2 Cucumis melo HOM05D006494 ORTHO05D007787 8.4e-14 82.4 268 30.2
vmacro09820 Vaccinium macrocarpon HOM05D006494 ORTHO05D007787 1.1e-13 82.0 274 29.9
COL.COLO4_28030 Corchorus olitorius HOM05D006494 ORTHO05D007787 4.1e-13 80.1 240 33.3
Ciclev10030388m.g Citrus clementina HOM05D006494 ORTHO05D007787 7.1e-13 79.3 274 28.5
arahy.Tifrunner.gnm1.ann1.P4DBMR Arachis hypogaea HOM05D062081 ORTHO05D007787 9.2e-13 79.0 264 31.8
Rhsim03G0190000 Rhododendron simsii HOM05D006494 ORTHO05D007787 1.2e-12 78.6 220 32.3
Cc02_g02520 Coffea canephora HOM05D006494 ORTHO05D007787 2.7e-12 77.4 266 30.5
Actinidia08572 Actinidia chinensis HOM05D006494 ORTHO05D007787 4.6e-12 76.6 170 35.9
Actinidia31832 Actinidia chinensis HOM05D006494 ORTHO05D007787 7.8e-12 75.9 208 31.7
MSTRG.8473 Avicennia marina HOM05D006494 ORTHO05D007787 7.8e-12 75.9 265 29.8
Prupe.7G043900 Prunus persica HOM05D006494 ORTHO05D007787 1.0e-11 75.5 208 33.2
Nn6g33336 Nelumbo nucifera HOM05D006494 ORTHO05D007787 2.3e-11 74.3 255 31.4
Nitab4.5_0000084g0320 Nicotiana tabacum HOM05D006494 ORTHO05D007787 3.9e-11 73.6 278 28.1
Migut.F01093 Erythranthe guttata HOM05D006494 ORTHO05D007787 5.1e-11 73.2 265 31.7
RcHm_v2.0_Chr3g0482351 Rosa chinensis HOM05D006494 ORTHO05D007787 1.1e-10 72.0 268 32.5
PGSC0003DMG400010122 Solanum tuberosum HOM05D006494 ORTHO05D007787 1.9e-10 71.2 280 27.5
Lj2g0001240 Lotus japonicus HOM05D000003 ORTHO05D000167 5.6e-10 69.7 93 39.8
Sopen03g004010 Solanum pennellii HOM05D006494 ORTHO05D007787 5.6e-10 69.7 284 27.5
SGA_v2.0_scaffold10G05304 Striga asiatica HOM05D006494 ORTHO05D007787 9.6e-10 68.9 219 31.5
SalBow2G1868 Salvia bowleyana HOM05D006494 ORTHO05D007787 1.2e-09 68.6 258 31.0
SalBow2G2185 Salvia bowleyana HOM05D006494 ORTHO05D007787 1.2e-09 68.6 258 31.0
Sed0015630 Sechium edule HOM05D006494 ORTHO05D007787 1.2e-09 68.6 279 29.4
Lj1g0015020 Lotus japonicus HOM05D000003 ORTHO05D001406 2.8e-09 67.4 93 43.0
Lj6g0015390 Lotus japonicus HOM05D000003 ORTHO05D000004 6.2e-09 66.2 76 46.1
Lj1g0000828 Lotus japonicus HOM05D000003 ORTHO05D000167 1.1e-08 65.5 93 39.8
Sabra04G0078700 Salix brachista HOM05D006494 ORTHO05D007787 1.4e-08 65.1 124 37.1
ECA232G1863 Erigeron canadensis HOM05D006494 ORTHO05D007787 1.8e-08 64.7 234 29.9
Solyc03g025160.4 Solanum lycopersicum HOM05D006494 ORTHO05D007787 1.8e-08 64.7 213 28.2
ECA232G4003 Erigeron canadensis HOM05D006494 ORTHO05D007787 8.9e-08 62.4 214 30.4
SHI13763 Sapria himalayana HOM05D000481 ORTHO05D003804 8.9e-08 62.4 192 39.1
EL10Ac3g07110 Beta vulgaris HOM05D000003 ORTHO05D000004 1.2e-07 62.0 67 41.8
EL10Ac9g23007 Beta vulgaris HOM05D007742 ORTHO05D000022 3.4e-07 60.5 67 40.3
PSO063G3044 Papaver somniferum HOM05D006494 ORTHO05D007787 1.3e-06 58.5 147 32.7
EL10As6g23653 Beta vulgaris HOM05D000003 ORTHO05D000167 2.2e-06 57.8 95 37.9
Potri.004G101600 Populus trichocarpa HOM05D006494 ORTHO05D007787 2.2e-06 57.8 114 36.0
TPR.G763 Trifolium pratense HOM05D006494 ORTHO05D007787 2.2e-06 57.8 60 56.7
RcHm_v2.0_Chr3g0486201 Rosa chinensis HOM05D006494 ORTHO05D007787 2.9e-06 57.4 260 27.3
arahy.Tifrunner.gnm1.ann1.Q03G4Y Arachis hypogaea HOM05D059322 ORTHO05D007787 4.9e-06 56.6 217 32.3
FvH4_5g32440 Fragaria vesca HOM05D006494 ORTHO05D007787 4.9e-06 56.6 270 29.6
Potri.017G113501 Populus trichocarpa HOM05D006494 ORTHO05D007787 4.9e-06 56.6 139 34.5
arahy.Tifrunner.gnm1.ann1.GMZ10Y Arachis hypogaea HOM05D059322 ORTHO05D007787 6.4e-06 56.2 200 32.0
CiPaw.12G091000 Carya illinoinensis HOM05D006494 ORTHO05D007787 8.4e-06 55.8 225 26.7


User provided reference genes

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