Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0022753 Lotus japonicus HOM05D006481 ORTHO05D008160 0.0e+00 1213.0 723 100.0
Medtr1g106795 Medicago truncatula HOM05D006481 ORTHO05D008160 1.2e-231 807.0 735 70.9
Ca_11047_v3 Cicer arietinum L. HOM05D006481 ORTHO05D008160 5.2e-227 791.6 739 72.0
Glyma.20G132200 Glycine max HOM05D006481 ORTHO05D008160 4.2e-221 771.9 787 68.0
Phvul.007G043300 Phaseolus vulgaris HOM05D006481 ORTHO05D008160 2.3e-219 766.1 797 64.2
TPR.G27130 Trifolium pratense HOM05D006481 ORTHO05D008160 4.0e-219 765.4 740 70.5
Lalb_Chr02g0145111 Lupinus albus HOM05D006481 ORTHO05D008160 1.6e-212 743.4 793 63.3
VMungo0720G0067 Vigna mungo HOM05D006481 ORTHO05D008160 4.9e-201 705.3 776 59.8
arahy.Tifrunner.gnm1.ann1.RQ9967 Arachis hypogaea HOM05D006481 ORTHO05D008160 2.4e-192 676.4 718 64.1
arahy.Tifrunner.gnm1.ann1.IH69Y8 Arachis hypogaea HOM05D006481 ORTHO05D008160 3.3e-189 666.0 724 63.7
Psat6g216240 Pisum sativum HOM05D006481 ORTHO05D008160 1.1e-187 661.0 780 62.9
CiPaw.05G015400 Carya illinoinensis HOM05D006481 ORTHO05D008160 6.6e-174 615.1 776 53.1
Cfa004657 Carpinus fangiana HOM05D006481 ORTHO05D008160 2.2e-169 600.1 892 45.5
Haze_10252 Corylus avellana HOM05D006481 ORTHO05D008160 1.8e-166 590.5 888 47.3
Thecc.02G113600 Theobroma cacao HOM05D006481 ORTHO05D008160 2.3e-166 590.1 783 53.3
Gohir.D12G020600 Gossypium hirsutum HOM05D006481 ORTHO05D008160 3.0e-166 589.7 755 53.4
Duzib132G1015 Durio zibethinus HOM05D006481 ORTHO05D008160 3.3e-165 586.3 753 53.5
QL11p031947 Quercus lobata HOM05D006481 ORTHO05D008160 1.7e-161 573.9 812 55.8
Dinv15788 Davidia involucrata HOM05D006481 ORTHO05D008160 2.1e-159 567.0 823 49.5
Manes.10G058310 Manihot esculenta HOM05D006481 ORTHO05D008160 1.8e-158 563.9 797 51.2
Prupe.8G140600 Prunus persica HOM05D006481 ORTHO05D008160 2.3e-158 563.5 805 53.5
Gorai.008G021000 Gossypium raimondii HOM05D006481 ORTHO05D008160 3.9e-158 562.8 820 48.2
COL.COLO4_32543 Corchorus olitorius HOM05D006481 ORTHO05D008160 1.8e-155 553.9 758 52.8
Dinv42219 Davidia involucrata HOM05D006481 ORTHO05D008160 6.9e-155 552.0 845 50.5
Gohir.A12G020400 Gossypium hirsutum HOM05D006481 ORTHO05D008160 2.5e-152 543.5 765 52.3
TWI14G1262 Tripterygium wilfordii HOM05D006481 ORTHO05D008160 4.6e-151 539.3 838 49.6
Potri.009G090900 Populus trichocarpa HOM05D006481 ORTHO05D008160 9.7e-149 531.6 770 51.8
CSS0029586 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 4.1e-147 526.2 786 52.2
CSS0020952 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 6.9e-147 525.4 786 52.0
MD05G1096200 Malus domestica HOM05D006481 ORTHO05D008160 5.0e-145 519.2 836 51.9
TAR376G0872 Trochodendron aralioides HOM05D006481 ORTHO05D008160 4.2e-144 516.2 785 48.9
FAN27G2785 Fragaria x ananassa HOM05D006481 ORTHO05D008160 1.6e-143 514.2 805 50.7
FvH4_2g03900 Fragaria vesca HOM05D006481 ORTHO05D008160 7.9e-143 511.9 803 50.2
FAN15G2146 Fragaria x ananassa HOM05D006481 ORTHO05D008160 1.3e-142 511.1 801 50.8
RcHm_v2.0_Chr6g0252931 Rosa chinensis HOM05D006481 ORTHO05D008160 3.9e-142 509.6 799 50.2
MELO3C017986.2 Cucumis melo HOM05D006481 ORTHO05D008160 6.3e-140 502.3 727 51.0
Potri.001G296700 Populus trichocarpa HOM05D006481 ORTHO05D008160 6.5e-137 492.3 738 48.8
Actinidia34372 Actinidia chinensis HOM05D006481 ORTHO05D008160 3.9e-134 483.0 834 42.6
CsaV3_4G000490 Cucumis sativus L. HOM05D006481 ORTHO05D008160 3.1e-131 473.4 722 49.9
Cpa.g.sc106.79 Carica papaya HOM05D006481 ORTHO05D008160 4.5e-130 469.5 985 41.4
Sabra09G0070200 Salix brachista HOM05D006481 ORTHO05D008160 3.6e-127 459.9 704 50.4
Sed0008985 Sechium edule HOM05D006481 ORTHO05D008160 5.3e-123 446.0 806 44.8
Lj5A217G88 Lonicera japonica HOM05D006481 ORTHO05D008160 7.7e-122 442.2 833 43.5
Ciclev10027845m.g Citrus clementina HOM05D006481 ORTHO05D008160 5.0e-121 439.5 814 41.0
Nitab4.5_0001105g0200 Nicotiana tabacum HOM05D006481 ORTHO05D008160 5.0e-121 439.5 773 44.0
MSTRG.16692 Avicennia marina HOM05D006481 ORTHO05D008160 9.4e-120 435.3 826 44.2
DCAR_021965 Daucus carota HOM05D006481 ORTHO05D008160 1.2e-119 434.9 923 41.2
GSVIVG01037865001 Vitis vinifera HOM05D006481 ORTHO05D008160 3.6e-119 433.3 727 41.7
Nitab4.5_0004685g0050 Nicotiana tabacum HOM05D006481 ORTHO05D008160 1.0e-118 431.8 791 42.9
Oeu021369.1 Olea europaea HOM05D006481 ORTHO05D008160 2.6e-117 427.2 733 44.7
THA.LOC104825834 Tarenaya hassleriana HOM05D006481 ORTHO05D008160 2.6e-117 427.2 814 44.2
vmacro01976 Vaccinium macrocarpon HOM05D006481 ORTHO05D008160 2.2e-116 424.1 732 44.5
Sabra16G0185800 Salix brachista HOM05D006481 ORTHO05D008160 2.8e-116 423.7 774 46.3
Eucgr.I01079 Eucalyptus grandis HOM05D006481 ORTHO05D008160 2.2e-113 414.1 661 51.3
Sopen01g049510 Solanum pennellii HOM05D006481 ORTHO05D008160 1.5e-112 411.4 872 40.0
PSO675G3182 Papaver somniferum HOM05D006481 ORTHO05D008160 3.2e-112 410.2 819 43.5
Solyc01g107260.4 Solanum lycopersicum HOM05D006481 ORTHO05D008160 5.5e-112 409.5 881 39.8
PSO541G1903 Papaver somniferum HOM05D006481 ORTHO05D008160 6.1e-111 406.0 819 43.3
Aqoxy6G02732 Aquilegia oxysepala HOM05D006481 ORTHO05D008160 8.8e-110 402.1 450 52.7
Cc02_g30880 Coffea canephora HOM05D006481 ORTHO05D008160 2.0e-109 401.0 842 39.8
SalBow6G0734 Salvia bowleyana HOM05D006481 ORTHO05D008160 2.6e-109 400.6 744 46.5
AL1G57410 Arabidopsis lyrata HOM05D006481 ORTHO05D008160 4.4e-109 399.8 747 47.4
Atru.BG.62.p Acer truncatum HOM05D006481 ORTHO05D008160 2.8e-108 397.1 426 57.0
CAN.G606.42 Capsicum annuum HOM05D006481 ORTHO05D008160 1.1e-107 395.2 938 38.2
AT1G49870 Arabidopsis thaliana HOM05D006481 ORTHO05D008160 3.1e-107 393.7 739 46.5
AUR62027350 Chenopodium quinoa HOM05D006481 ORTHO05D008160 5.4e-107 392.9 723 42.5
Sp1g36750 Schrenkiella parvula HOM05D006481 ORTHO05D008160 4.5e-106 389.8 758 45.9
AUR62031332 Chenopodium quinoa HOM05D006481 ORTHO05D008160 5.9e-106 389.4 708 42.5
Ah.14g085520 Amaranthus hybridus HOM05D006481 ORTHO05D008160 1.3e-105 388.3 784 42.1
Migut.B00421 Erythranthe guttata HOM05D006481 ORTHO05D008160 2.9e-105 387.1 714 40.2
ClCG10G010570 Citrullus lanatus HOM05D006481 ORTHO05D008160 6.5e-105 386.0 613 43.9
ECA234G0568 Erigeron canadensis HOM05D006481 ORTHO05D008160 8.6e-105 385.6 720 45.8
unitig_744.g24217 Utricularia gibba HOM05D006481 ORTHO05D008160 3.3e-104 383.6 723 41.1
Carub.0001s3908 Capsella rubella HOM05D006481 ORTHO05D008160 1.6e-103 381.3 763 42.3
Thhalv10011233m.g Eutrema salsugineum HOM05D006481 ORTHO05D008160 4.0e-102 376.7 753 43.7
EL10Ac8g19363 Beta vulgaris HOM05D006481 ORTHO05D008160 5.7e-101 372.9 731 42.7
CARHR039920 Cardamine hirsuta HOM05D006481 ORTHO05D008160 2.8e-100 370.5 709 47.7
Rhsim11G0154700 Rhododendron simsii HOM05D006481 ORTHO05D008160 2.4e-99 367.5 698 42.1
Aa31LG10G4220 Aethionema arabicum HOM05D006481 ORTHO05D008160 5.4e-99 366.3 618 46.9
RhsimUnG0125900 Rhododendron simsii HOM05D006481 ORTHO05D008160 7.8e-98 362.5 780 37.9
BcaB04g17289 Brassica carinata HOM05D006481 ORTHO05D008160 1.0e-97 362.1 729 44.6
A08p03520 Brassica napus HOM05D006481 ORTHO05D008160 1.1e-96 358.6 734 44.8
HanXRQChr16g0514441 Helianthus annuus HOM05D006481 ORTHO05D008160 2.1e-95 354.4 693 43.9
BolC8t47171H Brassica oleracea HOM05D006481 ORTHO05D008160 4.4e-93 346.7 742 43.5
C08p03680 Brassica napus HOM05D006481 ORTHO05D008160 2.2e-92 344.4 700 43.9
TAR628G0609 Trochodendron aralioides HOM05D006481 ORTHO05D008160 4.9e-92 343.2 389 54.0
Lsat_1_v5_gn_5_114361 Lactuca sativa HOM05D006481 ORTHO05D008160 1.1e-91 342.0 719 41.7
Peaxi162Scf00016g02732 Petunia axillaris HOM05D006481 ORTHO05D008160 2.4e-91 340.9 724 43.9
SGA_v2.0_scaffold225G43011 Striga asiatica HOM05D006481 ORTHO05D008160 4.1e-91 340.1 727 44.6
BraA08t32385Z Brassica rapa HOM05D006481 ORTHO05D008160 2.7e-90 337.4 756 43.3
ATR0030G005 Amborella trichopoda HOM05D006481 ORTHO05D008160 9.5e-88 328.9 789 38.0
PGSC0003DMG400025848 Solanum tuberosum HOM05D006481 ORTHO05D008160 1.2e-85 322.0 421 47.3
HPP92_017760 Vanilla planifolia HOM05D006481 ORTHO05D008160 2.9e-76 290.8 427 43.1
Zm00001eb050130 Zea mays HOM05D006481 ORTHO05D008160 4.9e-76 290.0 809 36.0
Os03g0604600 Oryza sativa ssp. japonica HOM05D006481 ORTHO05D008160 1.9e-75 288.1 436 46.1
Sc14g0002570 Simmondsia chinensis HOM05D006481 ORTHO05D008160 6.6e-57 226.5 590 45.4
SEGI_11188 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 6.4e-52 209.9 415 37.3
SEGI_37018 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 6.4e-52 209.9 415 37.3
CDE04G1272 Ceratophyllum demersum HOM05D006481 ORTHO05D008160 6.9e-46 189.9 347 41.5
SEGI_25924 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 1.3e-44 185.7 343 41.4
FAN20G1292 Fragaria x ananassa HOM05D006481 ORTHO05D008160 8.4e-44 183.0 528 41.7
MD10G1102400 Malus domestica HOM05D006481 ORTHO05D008160 3.8e-36 157.5 176 54.0
Pp3c18_18840 Physcomitrium patens HOM05D006481 ORTHO05D008160 4.6e-34 150.6 384 35.9
SMO196G0099 Selaginella moellendorffii HOM05D006481 ORTHO05D008160 1.8e-30 138.7 292 37.0
SHI05066 Sapria himalayana HOM05D006481 ORTHO05D008160 1.6e-26 125.6 132 53.8
CBR_g49330 Chara braunii HOM05D006481 ORTHO05D008160 4.3e-24 117.5 188 40.4
Duzib052G0964 Durio zibethinus HOM05D006481 ORTHO05D008160 3.7e-23 114.4 137 53.3
MD10G1102500 Malus domestica HOM05D006481 ORTHO05D008160 4.8e-23 114.0 155 50.3
TAR628G0206 Trochodendron aralioides HOM05D006481 ORTHO05D008160 1.3e-20 105.9 335 38.2
EL10Ac6g13964 Beta vulgaris HOM05D006481 ORTHO05D008160 1.7e-20 105.5 221 36.7
RcHm_v2.0_Chr6g0252961 Rosa chinensis HOM05D006481 ORTHO05D008160 7.9e-18 96.7 102 52.0
Hma1.2p1_1361F.1_g278150 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 1.4e-17 95.9 143 46.2
Atru.chr5.2411 Acer truncatum HOM05D006481 ORTHO05D008160 1.8e-17 95.5 99 53.5
Hma1.2p1_0000F.1_g001000 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 1.1e-14 86.3 356 32.6
SHI05065 Sapria himalayana HOM05D006481 ORTHO05D008160 1.6e-10 72.4 116 44.8
Glyma.10G258901 Glycine max HOM05D006481 ORTHO05D008160 6.1e-10 70.5 94 42.6
Hma1.2p1_0883F.1_g232290 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 3.3e-08 64.7 68 57.4
BcaC05g27423 Brassica carinata HOM05D006481 ORTHO05D008160 9.7e-08 63.2 47 66.0
Oeu039499.1 Olea europaea HOM05D006481 ORTHO05D008160 1.3e-07 62.8 35 77.1
SGA_v2.0_scaffold4001G54416 Striga asiatica HOM05D006481 ORTHO05D008160 2.2e-07 62.0 356 36.2


User provided reference genes

Program Settings