Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0022697 Lotus japonicus HOM05D003606 ORTHO05D004650 1.2e-182 643.7 412 100.0
Phvul.004G092500 Phaseolus vulgaris HOM05D003606 ORTHO05D004650 1.1e-167 594.0 407 93.4
Glyma.16G165100 Glycine max HOM05D003606 ORTHO05D004650 3.1e-167 592.4 407 92.6
Lalb_Chr21g0315701 Lupinus albus HOM05D003606 ORTHO05D004650 5.4e-164 581.6 411 90.8
VMungo0464G1676 Vigna mungo HOM05D003606 ORTHO05D004650 2.7e-163 579.3 407 90.9
Glyma.02G080600 Glycine max HOM05D003606 ORTHO05D004650 7.8e-163 577.8 404 92.3
Potri.009G058000 Populus trichocarpa HOM05D003606 ORTHO05D004650 6.4e-157 558.1 399 89.7
Ca_19553_v3 Cicer arietinum L. HOM05D003606 ORTHO05D004650 9.3e-156 554.3 408 78.4
Cpa.g.sc19.249 Carica papaya HOM05D003606 ORTHO05D004650 1.3e-154 550.4 406 77.8
Medtr1g054300 Medicago truncatula HOM05D003606 ORTHO05D004650 3.0e-154 549.3 400 79.5
Manes.10G139000 Manihot esculenta HOM05D003606 ORTHO05D004650 5.1e-154 548.5 399 89.0
Ciclev10015115m.g Citrus clementina HOM05D003606 ORTHO05D004650 6.6e-154 548.1 399 75.7
Sabra09G0042600 Salix brachista HOM05D003606 ORTHO05D004650 8.7e-154 547.7 399 85.0
Psat6g110240 Pisum sativum HOM05D003606 ORTHO05D004650 1.9e-153 546.6 406 77.3
TWI32G0899 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 1.9e-153 546.6 404 86.6
Atru.chr11.2590 Acer truncatum HOM05D003606 ORTHO05D004650 4.3e-153 545.4 399 89.2
MELO3C023992.2 Cucumis melo HOM05D003606 ORTHO05D004650 4.3e-153 545.4 407 87.0
CsaV3_3G031990 Cucumis sativus L. HOM05D003606 ORTHO05D004650 4.3e-153 545.4 407 87.0
TPR.G14490 Trifolium pratense HOM05D003606 ORTHO05D004650 5.6e-153 545.0 402 78.1
GSVIVG01032166001 Vitis vinifera HOM05D003606 ORTHO05D004650 2.1e-152 543.1 404 87.4
Eucgr.G03357 Eucalyptus grandis HOM05D003606 ORTHO05D004650 6.2e-152 541.6 406 86.7
Dinv09318 Davidia involucrata HOM05D003606 ORTHO05D004650 8.1e-152 541.2 412 85.7
Actinidia02534 Actinidia chinensis HOM05D000009 ORTHO05D004650 3.1e-151 539.3 402 83.8
Haze_03155 Corylus avellana HOM05D003606 ORTHO05D004650 3.1e-151 539.3 405 87.2
CiPaw.05G162700 Carya illinoinensis HOM05D003606 ORTHO05D004650 4.0e-151 538.9 403 87.3
TWI34G0860 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 9.0e-151 537.7 399 87.2
Nitab4.5_0001284g0090 Nicotiana tabacum HOM05D003606 ORTHO05D004650 1.7e-149 533.5 411 76.9
CiPaw.05G024300 Carya illinoinensis HOM05D003606 ORTHO05D004650 2.2e-149 533.1 407 87.2
Dinv43413 Davidia involucrata HOM05D003606 ORTHO05D004650 2.2e-149 533.1 409 86.3
Nn5g28763 Nelumbo nucifera HOM05D003606 ORTHO05D004650 2.2e-149 533.1 399 79.7
Gohir.A08G142700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 2.9e-149 532.7 406 86.5
Gohir.D08G163700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 3.8e-149 532.3 406 86.5
Cfa010803 Carpinus fangiana HOM05D003606 ORTHO05D004650 6.4e-149 531.6 392 88.5
Prupe.2G020500 Prunus persica HOM05D003606 ORTHO05D004650 6.4e-149 531.6 408 86.5
Gorai.004G170600 Gossypium raimondii HOM05D003606 ORTHO05D004650 8.4e-149 531.2 406 86.2
Sed0024972 Sechium edule HOM05D003606 ORTHO05D004650 8.4e-149 531.2 407 86.5
Sc23g0005910 Simmondsia chinensis HOM05D003606 ORTHO05D004650 1.1e-148 530.8 396 86.9
MSTRG.2635 Avicennia marina HOM05D003606 ORTHO05D004650 1.4e-148 530.4 403 85.6
Solyc03g112530.3 Solanum lycopersicum HOM05D003606 ORTHO05D004650 3.2e-148 529.3 412 78.6
Sopen03g031590 Solanum pennellii HOM05D003606 ORTHO05D004650 3.2e-148 529.3 412 78.6
PGSC0003DMG400018107 Solanum tuberosum HOM05D003606 ORTHO05D004650 5.4e-148 528.5 412 78.6
Cc02_g29020 Coffea canephora HOM05D003606 ORTHO05D004650 7.1e-148 528.1 404 84.7
CDE02G3858 Ceratophyllum demersum HOM05D003606 ORTHO05D004650 9.3e-148 527.7 403 84.1
Thecc.01G407200 Theobroma cacao HOM05D003606 ORTHO05D004650 1.2e-147 527.3 406 85.2
PSO675G6796 Papaver somniferum HOM05D003606 ORTHO05D004650 3.5e-147 525.8 396 80.3
PGR031G1688 Punica granatum HOM05D003606 ORTHO05D004650 4.6e-147 525.4 401 83.5
Duzib138G0203 Durio zibethinus HOM05D003606 ORTHO05D004650 7.9e-147 524.6 406 84.0
SalBow4G1900 Salvia bowleyana HOM05D003606 ORTHO05D004650 7.9e-147 524.6 410 71.7
Migut.D00412 Erythranthe guttata HOM05D003606 ORTHO05D004650 1.0e-146 524.2 403 84.6
Lj3A990T71 Lonicera japonica HOM05D003606 ORTHO05D004650 3.0e-146 522.7 402 84.6
CAN.G338.7 Capsicum annuum HOM05D003606 ORTHO05D004650 8.7e-146 521.2 412 81.6
HanXRQChr17g0563081 Helianthus annuus HOM05D003606 ORTHO05D004650 8.7e-146 521.2 396 80.6
Rhsim07G0058400 Rhododendron simsii HOM05D003606 ORTHO05D004650 5.6e-145 518.5 412 83.3
COL.COLO4_04879 Corchorus olitorius HOM05D003606 ORTHO05D004650 1.3e-144 517.3 406 83.3
SGA_v2.0_scaffold1G00601 Striga asiatica HOM05D003606 ORTHO05D004650 2.1e-144 516.5 394 86.3
HanXRQChr16g0524861 Helianthus annuus HOM05D003606 ORTHO05D004650 1.1e-143 514.2 401 83.5
THA.LOC104819092 Tarenaya hassleriana HOM05D003606 ORTHO05D004650 1.2e-142 510.8 402 71.4
DCAR_003761 Daucus carota HOM05D003606 ORTHO05D004650 2.6e-142 509.6 396 85.4
vmacro13693 Vaccinium macrocarpon HOM05D003606 ORTHO05D004650 2.6e-142 509.6 396 85.6
arahy.Tifrunner.gnm1.ann1.F9F3MK Arachis hypogaea HOM05D003606 ORTHO05D004650 5.8e-142 508.4 412 84.0
PSO541G2647 Papaver somniferum HOM05D003606 ORTHO05D004650 5.8e-142 508.4 391 79.3
RcHm_v2.0_Chr1g0317321 Rosa chinensis HOM05D003606 ORTHO05D004650 7.6e-142 508.1 401 75.3
AUR62029807 Chenopodium quinoa HOM05D003606 ORTHO05D004650 9.9e-142 507.7 416 72.6
arahy.Tifrunner.gnm1.ann1.GAUK41 Arachis hypogaea HOM05D003606 ORTHO05D004650 1.7e-141 506.9 412 84.0
SGA_v2.0_scaffold138G35254 Striga asiatica HOM05D003606 ORTHO05D004650 1.7e-141 506.9 415 80.2
arahy.Tifrunner.gnm1.ann1.V59V4E Arachis hypogaea HOM05D003606 ORTHO05D004650 2.2e-141 506.5 412 83.5
AUR62023088 Chenopodium quinoa HOM05D003606 ORTHO05D004650 4.9e-141 505.4 416 72.4
Lsat_1_v5_gn_4_31941 Lactuca sativa HOM05D003606 ORTHO05D004650 4.9e-141 505.4 406 83.0
ECA234G3512 Erigeron canadensis HOM05D003606 ORTHO05D004650 8.4e-141 504.6 412 77.2
ClCG10G012220 Citrullus lanatus HOM05D003606 ORTHO05D004650 3.2e-140 502.7 422 78.4
MD17G1287700 Malus domestica HOM05D003606 ORTHO05D004650 5.5e-140 501.9 394 85.5
Aqoxy2G00153 Aquilegia oxysepala HOM05D003606 ORTHO05D004650 7.1e-140 501.5 403 83.1
Ah.10g038660 Amaranthus hybridus HOM05D003606 ORTHO05D004650 1.6e-139 500.4 413 72.4
FvH4_7g01500 Fragaria vesca HOM05D003606 ORTHO05D004650 1.3e-138 497.3 400 75.5
FAN01G0800 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.8e-138 496.9 414 73.9
FAN03G2659 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.8e-138 496.9 395 76.2
FAN06G2132 Fragaria x ananassa HOM05D003606 ORTHO05D004650 3.0e-138 496.1 400 71.0
FAN10G3084 Fragaria x ananassa HOM05D003606 ORTHO05D004650 3.9e-138 495.7 395 75.9
MD02G1305600 Malus domestica HOM05D003606 ORTHO05D004650 3.7e-136 489.2 389 76.9
arahy.Tifrunner.gnm1.ann1.ZXEF1Z Arachis hypogaea HOM05D003606 ORTHO05D004650 4.5e-134 482.3 412 71.1
Manes.07G008500 Manihot esculenta HOM05D003606 ORTHO05D004650 4.5e-134 482.3 399 82.7
Nitab4.5_0012005g0010 Nicotiana tabacum HOM05D003606 ORTHO05D004650 1.3e-133 480.7 410 71.7
ATR0626G036 Amborella trichopoda HOM05D003606 ORTHO05D004650 2.9e-133 479.6 400 67.2
Sp6g14980 Schrenkiella parvula HOM05D003606 ORTHO05D004650 1.9e-132 476.9 390 79.2
BcaC03g14497 Brassica carinata HOM05D003606 ORTHO05D004650 3.2e-132 476.1 408 76.5
C02p19350 Brassica napus HOM05D003606 ORTHO05D004650 3.2e-132 476.1 408 76.5
BolC2t08070H Brassica oleracea HOM05D003606 ORTHO05D004650 3.2e-132 476.1 408 76.5
Thhalv10013442m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 4.2e-132 475.7 392 78.3
BcaB05g21983 Brassica carinata HOM05D003606 ORTHO05D004650 5.5e-132 475.3 408 76.5
AT5G52820 Arabidopsis thaliana HOM05D003606 ORTHO05D004650 9.3e-132 474.6 394 77.9
Zm00001eb297740 Zea mays HOM05D003606 ORTHO05D004650 6.1e-131 471.9 388 79.9
Os11g0594200 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 7.9e-131 471.5 390 80.3
Aa31LG3G9060 Aethionema arabicum HOM05D003606 ORTHO05D004650 1.0e-130 471.1 411 76.4
Peaxi162Scf00089g01530 Petunia axillaris HOM05D003606 ORTHO05D004650 1.8e-130 470.3 400 79.8
A02p11600 Brassica napus HOM05D003606 ORTHO05D004650 6.7e-130 468.4 408 75.7
BraA02t06222Z Brassica rapa HOM05D003606 ORTHO05D004650 6.7e-130 468.4 408 75.7
AL8G27260 Arabidopsis lyrata HOM05D003606 ORTHO05D004650 1.5e-129 467.2 391 77.5
Oeu025828.1 Olea europaea HOM05D003606 ORTHO05D004650 1.9e-129 466.8 525 63.2
QL06p005538 Quercus lobata HOM05D003606 ORTHO05D004650 4.3e-129 465.7 359 85.5
SEGI_00890 Sequoiadendron giganteum HOM05D003606 ORTHO05D004650 4.3e-129 465.7 396 71.7
Carub.0008s1298 Capsella rubella HOM05D003606 ORTHO05D004650 7.4e-129 464.9 390 77.9
CARHR265750 Cardamine hirsuta HOM05D003606 ORTHO05D004650 2.8e-128 463.0 389 73.3
TAR633G2243 Trochodendron aralioides HOM05D003606 ORTHO05D004650 4.8e-128 462.2 517 62.9
Hund21610 Selenicereus undatus HOM05D003606 ORTHO05D004650 6.9e-127 458.4 421 67.2
Os10g0104500 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 1.3e-125 454.1 391 79.3
SHI00285 Sapria himalayana HOM05D003606 ORTHO05D004650 2.3e-122 443.4 426 64.3
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 4.2e-116 422.5 409 57.7
CANSAT01G2566 Cannabis sativa HOM05D003606 ORTHO05D004650 1.0e-114 417.9 389 72.2
Thhalv10025051m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 4.4e-113 412.5 406 59.1
AagrBONN_evm.TU.Sc2ySwM_344.4930 Anthoceros agrestis HOM05D003606 ORTHO05D004650 9.7e-113 411.4 396 67.2
BcaNung04849 Brassica carinata HOM05D003606 ORTHO05D004650 8.5e-109 398.3 404 58.9
BolC9t59770H Brassica oleracea HOM05D003606 ORTHO05D004650 8.5e-109 398.3 404 58.9
Mapoly0082s0085 Marchantia polymorpha HOM05D003606 ORTHO05D004650 8.5e-109 398.3 401 66.3
BolC7t45366H Brassica oleracea HOM05D003606 ORTHO05D004650 1.1e-108 397.9 399 58.1
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 3.2e-108 396.4 417 59.0
Pp3c1_35350 Physcomitrium patens HOM05D003606 ORTHO05D004650 4.2e-108 396.0 391 67.8
BcaC04g20537 Brassica carinata HOM05D003606 ORTHO05D004650 5.5e-108 395.6 410 54.9
BcaC06g33533 Brassica carinata HOM05D003606 ORTHO05D004650 1.2e-107 394.4 424 55.7
C09p70260 Brassica napus HOM05D003606 ORTHO05D004650 2.1e-107 393.7 404 58.7
PSO541G4704 Papaver somniferum HOM05D003606 ORTHO05D004650 1.0e-106 391.3 382 61.0
BcaNung04664 Brassica carinata HOM05D003606 ORTHO05D004650 8.8e-106 388.3 403 57.6
SGA_v2.0_scaffold90G27689 Striga asiatica HOM05D003606 ORTHO05D004650 1.3e-104 384.4 391 73.9
C07p48580 Brassica napus HOM05D003606 ORTHO05D004650 1.4e-103 380.9 433 53.6
CBR_g38286 Chara braunii HOM05D003606 ORTHO05D004650 6.5e-101 372.1 390 55.6
HPP92_026819 Vanilla planifolia HOM05D003606 ORTHO05D004650 6.5e-101 372.1 446 47.3
SMO259G0032 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 4.7e-99 365.9 410 54.4
TPR.G7603 Trifolium pratense HOM05D003606 ORTHO05D004650 8.0e-99 365.2 335 67.5
AUR62009405 Chenopodium quinoa HOM05D003606 ORTHO05D004650 1.4e-98 364.4 298 81.2
A10p29890 Brassica napus HOM05D003606 ORTHO05D004650 1.2e-94 351.3 419 51.8
MD09G1280600 Malus domestica HOM05D003606 ORTHO05D004650 4.4e-89 332.8 305 71.8
MCO05G213 Micromonas commoda HOM05D003606 ORTHO05D004650 1.7e-88 330.9 387 51.7
BcaC06g32566 Brassica carinata HOM05D003606 ORTHO05D004650 6.1e-83 312.4 386 47.7
Hund00228 Selenicereus undatus HOM05D003606 ORTHO05D004650 5.7e-81 305.8 366 54.1
BcaNung05838 Brassica carinata HOM05D003606 ORTHO05D004650 1.2e-78 298.1 387 44.7
Ca_22822_v3 Cicer arietinum L. HOM05D003606 ORTHO05D000002 6.6e-77 292.4 197 70.6
PRCOL_00003575 Prasinoderma coloniale HOM05D003606 ORTHO05D004650 4.9e-72 276.2 417 46.8
BraA10t45027Z Brassica rapa HOM05D003606 ORTHO05D004650 2.4e-71 273.9 254 65.0
COL.COLO4_04880 Corchorus olitorius HOM05D003606 ORTHO05D004650 1.0e-69 268.5 293 74.4
Haze_26363 Corylus avellana HOM05D003606 ORTHO05D004650 1.1e-66 258.5 401 42.9
BraA10t43107Z Brassica rapa HOM05D003606 ORTHO05D004650 2.2e-64 250.8 251 59.4
A10p10270 Brassica napus HOM05D003606 ORTHO05D004650 3.2e-63 246.9 251 59.0
HanXRQChr15g0491881 Helianthus annuus HOM05D003606 ORTHO05D004650 1.6e-62 244.6 194 62.9
Cre01.g000600 Chlamydomonas reinhardtii HOM05D003606 ORTHO05D004650 1.6e-59 234.6 378 48.7
CSS0037178 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 3.6e-51 206.8 103 92.2
AUR62034729 Chenopodium quinoa HOM05D003606 ORTHO05D004650 9.9e-49 198.7 103 88.3
Sc03g0002540 Simmondsia chinensis HOM05D003606 ORTHO05D004650 9.3e-47 192.2 120 78.3
BolC9t57121H Brassica oleracea HOM05D003606 ORTHO05D004650 2.7e-46 190.7 299 39.1
CSS0009389 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 2.7e-46 190.7 134 70.9
C09p42410 Brassica napus HOM05D003606 ORTHO05D004650 1.1e-44 185.3 304 38.8
Manes.07G009860 Manihot esculenta HOM05D003606 ORTHO05D004650 2.6e-41 174.1 88 88.6
Cfa026891 Carpinus fangiana HOM05D003606 ORTHO05D004650 6.6e-37 159.5 385 35.6
BcaC06g33525 Brassica carinata HOM05D003606 ORTHO05D004650 5.3e-34 149.8 104 65.4
TAR636G3369 Trochodendron aralioides HOM05D003606 ORTHO05D003127 2.9e-32 144.1 149 53.0
BraA10t45028Z Brassica rapa HOM05D003606 ORTHO05D004650 1.1e-31 142.1 95 71.6
Oeu060950.1 Olea europaea HOM05D003606 ORTHO05D016710 5.4e-31 139.8 184 43.5
BcaNung04851 Brassica carinata HOM05D003606 ORTHO05D004650 7.1e-31 139.4 102 67.6
Medtr0421s0030 Medicago truncatula HOM05D003606 ORTHO05D004650 2.3e-29 134.4 84 77.4
MD09G1280700 Malus domestica HOM05D003606 ORTHO05D004650 2.8e-27 127.5 81 74.1
TPR.G39665 Trifolium pratense HOM05D003606 ORTHO05D033191 4.0e-26 123.6 74 78.4
SalBow4G2833 Salvia bowleyana HOM05D003606 ORTHO05D004650 6.9e-26 122.9 299 38.1
CSS0038697 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D016710 5.5e-23 113.2 57 82.5
BolC9t57120H Brassica oleracea HOM05D003606 ORTHO05D033191 3.5e-22 110.5 77 67.5
SMO259G0025 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 3.7e-19 100.5 49 83.7
C09p42400 Brassica napus HOM05D003606 ORTHO05D033191 4.1e-18 97.1 67 64.2
GSVIVG01032170001 Vitis vinifera HOM05D003606 ORTHO05D004650 6.9e-18 96.3 63 71.4
QL06p005531 Quercus lobata HOM05D011240 ORTHO05D014254 2.6e-17 94.4 44 95.5
TAR636G2756 Trochodendron aralioides HOM05D003606 ORTHO05D004650 4.5e-17 93.6 43 97.7
COL.COLO4_24393 Corchorus olitorius HOM05D003606 ORTHO05D004650 1.4e-15 88.6 103 47.6
BcaC01g02187 Brassica carinata HOM05D003606 ORTHO05D016710 3.2e-15 87.4 120 60.0
Hund00229 Selenicereus undatus HOM05D003606 ORTHO05D004650 9.3e-15 85.9 43 88.4
Eucgr.G03346 Eucalyptus grandis HOM05D003606 ORTHO05D004650 1.6e-14 85.1 45 84.4
C02p14020 Brassica napus HOM05D003606 ORTHO05D016710 3.9e-13 80.5 164 31.7
Eucgr.G03354 Eucalyptus grandis HOM05D003606 ORTHO05D004650 1.9e-12 78.2 103 45.6
CSS0009074 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 2.2e-11 74.7 42 76.2
CSS0037126 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 2.2e-11 74.7 42 76.2
Oeu060951.1 Olea europaea HOM05D003606 ORTHO05D004650 3.7e-11 73.9 38 84.2
BolC2t07520H Brassica oleracea HOM05D003606 ORTHO05D016710 1.8e-10 71.6 46 63.0
TPR.G8471 Trifolium pratense HOM05D003606 ORTHO05D004650 4.1e-10 70.5 40 77.5
CANSAT51G0014 Cannabis sativa HOM05D003606 ORTHO05D004650 1.2e-09 68.9 83 43.4
CSS0046585 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 1.3e-08 65.5 57 59.6
Pp3c14_5700 Physcomitrium patens HOM05D009278 ORTHO05D002685 2.7e-06 57.8 44 56.8
THA.LOC104821238 Tarenaya hassleriana HOM05D002634 ORTHO05D003100 6.1e-06 56.6 72 38.9
Actinidia18910 Actinidia chinensis HOM05D002288 ORTHO05D002894 7.9e-06 56.2 79 35.4
Pp3c10_4790 Physcomitrium patens HOM05D009278 ORTHO05D002685 7.9e-06 56.2 50 52.0
SMO361G0390 Selaginella moellendorffii HOM05D002303 ORTHO05D006504 7.9e-06 56.2 69 42.0


User provided reference genes

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