Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0022679 Lotus japonicus HOM05D002737 ORTHO05D005828 1.4e-168 596.3 319 100.0
Lj5g0011855 Lotus japonicus HOM05D002737 ORTHO05D005828 6.1e-156 554.3 319 92.8
Glyma.10G288000 Glycine max HOM05D002737 ORTHO05D005828 2.5e-125 452.6 320 79.1
Glyma.20G101200 Glycine max HOM05D002737 ORTHO05D005828 3.1e-123 445.7 320 78.4
Medtr5g095010 Medicago truncatula HOM05D002737 ORTHO05D005828 7.1e-120 434.5 319 75.2
Ca_06383_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 4.6e-119 431.8 317 74.4
Ca_29964_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 4.6e-119 431.8 317 74.4
Psat2g008640 Pisum sativum HOM05D002737 ORTHO05D005828 2.3e-118 429.5 319 73.4
Lalb_Chr02g0143691 Lupinus albus HOM05D002737 ORTHO05D005828 5.6e-117 424.9 319 73.4
arahy.Tifrunner.gnm1.ann1.4SNC56 Arachis hypogaea HOM05D002737 ORTHO05D005828 6.4e-113 411.4 318 72.6
arahy.Tifrunner.gnm1.ann1.AGV1MP Arachis hypogaea HOM05D002737 ORTHO05D005828 6.4e-113 411.4 318 72.6
VMungo0720G0453 Vigna mungo HOM05D002737 ORTHO05D005828 1.1e-112 410.6 311 75.2
TPR.G14160 Trifolium pratense HOM05D002737 ORTHO05D005828 2.0e-98 363.2 320 66.2
Phvul.007G013400 Phaseolus vulgaris HOM05D002737 ORTHO05D005828 1.8e-94 350.1 319 65.8
Dinv17085 Davidia involucrata HOM05D002737 ORTHO05D005828 4.2e-80 302.4 323 57.0
Manes.01G182101 Manihot esculenta HOM05D002737 ORTHO05D005828 7.9e-79 298.1 324 57.1
Actinidia07271 Actinidia chinensis HOM05D002737 ORTHO05D005828 3.0e-78 296.2 320 55.3
Duzib150G0779 Durio zibethinus HOM05D002737 ORTHO05D005828 5.1e-78 295.4 321 56.4
TWI77G0520 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 1.3e-76 290.8 325 57.8
ClCG01G011660 Citrullus lanatus HOM05D002737 ORTHO05D005828 8.2e-76 288.1 336 53.9
CSS0011545 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 2.4e-75 286.6 318 55.0
FAN23G1354 Fragaria x ananassa HOM05D002737 ORTHO05D005828 2.4e-75 286.6 326 53.4
MELO3C003924.2 Cucumis melo HOM05D002737 ORTHO05D005828 1.2e-74 284.3 324 54.9
CsaV3_2G009130 Cucumis sativus L. HOM05D002737 ORTHO05D005828 1.5e-74 283.9 335 54.6
FAN19G0045 Fragaria x ananassa HOM05D002737 ORTHO05D005828 1.5e-74 283.9 318 53.8
FAN26G0444 Fragaria x ananassa HOM05D002737 ORTHO05D005828 1.5e-74 283.9 326 53.1
FvH4_1g21730 Fragaria vesca HOM05D002737 ORTHO05D005828 2.6e-74 283.1 318 53.5
TWI79G0303 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 5.9e-74 282.0 324 55.2
Haze_00725 Corylus avellana HOM05D002737 ORTHO05D005828 2.2e-73 280.0 319 55.2
Prupe.6G178500 Prunus persica HOM05D002737 ORTHO05D005828 2.2e-73 280.0 333 53.2
Duzib168G0210 Durio zibethinus HOM05D002737 ORTHO05D005828 5.0e-73 278.9 321 55.1
RcHm_v2.0_Chr2g0115601 Rosa chinensis HOM05D002737 ORTHO05D005828 8.5e-73 278.1 318 53.5
CiPaw.14G096400 Carya illinoinensis HOM05D002737 ORTHO05D005828 1.1e-72 277.7 317 55.8
Rhsim13G0195300 Rhododendron simsii HOM05D002737 ORTHO05D005828 1.1e-72 277.7 335 52.8
Sed0023461 Sechium edule HOM05D002737 ORTHO05D005828 1.4e-72 277.3 328 52.4
CSS0011939 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 4.2e-72 275.8 318 53.8
Haze_00729 Corylus avellana HOM05D002737 ORTHO05D005828 5.5e-72 275.4 319 54.5
vmacro03959 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 3.6e-71 272.7 322 53.1
Haze_23327 Corylus avellana HOM05D002737 ORTHO05D005828 3.0e-70 269.6 319 54.5
CAN.G745.41 Capsicum annuum HOM05D002737 ORTHO05D005828 5.1e-70 268.9 332 52.7
Potri.009G162500 Populus trichocarpa HOM05D002737 ORTHO05D005828 2.6e-69 266.5 326 53.4
Hma1.2p1_0793F.1_g218640 Hydrangea macrophylla HOM05D002737 ORTHO05D005828 4.4e-69 265.8 321 52.3
Sc12g0004790 Simmondsia chinensis HOM05D002737 ORTHO05D005828 4.4e-69 265.8 322 56.2
CANSAT64G0180 Cannabis sativa HOM05D002737 ORTHO05D005828 2.2e-68 263.5 321 52.3
vmacro06935 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 6.3e-68 261.9 321 51.4
Nitab4.5_0001135g0150 Nicotiana tabacum HOM05D002737 ORTHO05D005828 1.1e-67 261.2 333 51.1
PGSC0003DMG400019621 Solanum tuberosum HOM05D002737 ORTHO05D005828 1.1e-67 261.2 331 52.6
SGA_v2.0_scaffold7G03980 Striga asiatica HOM05D002737 ORTHO05D005828 1.1e-67 261.2 323 51.4
Solyc11g068870.2 Solanum lycopersicum HOM05D002737 ORTHO05D005828 1.8e-67 260.4 331 52.9
ECA248G3131 Erigeron canadensis HOM05D002737 ORTHO05D005828 3.1e-67 259.6 322 51.2
Lj7A589T65 Lonicera japonica HOM05D002737 ORTHO05D005828 3.1e-67 259.6 319 52.0
SGA_v2.0_scaffold114G31961 Striga asiatica HOM05D002737 ORTHO05D005828 9.1e-67 258.1 322 51.2
Sopen11g027560 Solanum pennellii HOM05D002737 ORTHO05D005828 1.2e-66 257.7 331 52.6
Lsat_1_v5_gn_5_176321 Lactuca sativa HOM05D002737 ORTHO05D005828 1.6e-66 257.3 319 52.4
Cc01_g08470 Coffea canephora HOM05D002737 ORTHO05D005828 3.5e-66 256.1 319 53.3
Nitab4.5_0000893g0040 Nicotiana tabacum HOM05D002737 ORTHO05D005828 5.9e-66 255.4 331 51.1
MSTRG.21020 Avicennia marina HOM05D002737 ORTHO05D005828 1.7e-65 253.8 326 49.7
EL10Ac7g17115 Beta vulgaris HOM05D002737 ORTHO05D005828 2.2e-65 253.4 319 53.9
Ah.10g032410 Amaranthus hybridus HOM05D002737 ORTHO05D005828 1.9e-64 250.4 355 47.6
TAR268G0004 Trochodendron aralioides HOM05D002737 ORTHO05D005828 1.9e-64 250.4 322 50.0
Sabra15G0046000 Salix brachista HOM05D002737 ORTHO05D005828 7.2e-64 248.4 320 51.2
Sabra15G0048200 Salix brachista HOM05D002737 ORTHO05D005828 7.2e-64 248.4 320 51.2
Migut.D02412 Erythranthe guttata HOM05D002737 ORTHO05D005828 1.6e-63 247.3 326 49.4
Thecc.09G275600 Theobroma cacao HOM05D002737 ORTHO05D005828 4.7e-63 245.7 326 50.3
Gohir.D07G115800 Gossypium hirsutum HOM05D002737 ORTHO05D005828 6.1e-63 245.4 325 50.8
CDE06G1256 Ceratophyllum demersum HOM05D002737 ORTHO05D005828 4.0e-62 242.7 318 49.1
PGR119G1771 Punica granatum HOM05D002737 ORTHO05D005828 4.0e-62 242.7 326 48.5
GSVIVG01036054001 Vitis vinifera HOM05D002737 ORTHO05D005828 1.5e-61 240.7 204 63.2
Oeu049293.2 Olea europaea HOM05D002737 ORTHO05D005828 3.3e-61 239.6 364 45.6
Sabra15G0059900 Salix brachista HOM05D002737 ORTHO05D005828 3.3e-61 239.6 327 50.5
MD15G1329700 Malus domestica HOM05D002737 ORTHO05D005828 7.5e-61 238.4 341 46.6
Aa31LG5G8680 Aethionema arabicum HOM05D002737 ORTHO05D005828 1.3e-60 237.7 321 47.4
Gorai.001G124100 Gossypium raimondii HOM05D002737 ORTHO05D005828 1.3e-60 237.7 331 49.2
PSO063G0569 Papaver somniferum HOM05D002737 ORTHO05D005828 2.8e-60 236.5 321 48.6
Gohir.A07G112300 Gossypium hirsutum HOM05D002737 ORTHO05D005828 3.1e-59 233.0 326 49.1
unitig_88.g27805 Utricularia gibba HOM05D002737 ORTHO05D002121 4.1e-59 232.6 320 48.8
Eucgr.J00541 Eucalyptus grandis HOM05D002737 ORTHO05D005828 7.0e-59 231.9 292 51.4
Nn6g34744 Nelumbo nucifera HOM05D002737 ORTHO05D005828 9.1e-59 231.5 321 48.0
Hund18792 Selenicereus undatus HOM05D002737 ORTHO05D005828 2.0e-58 230.3 341 48.1
THA.LOC104826443 Tarenaya hassleriana HOM05D002737 ORTHO05D005828 2.0e-58 230.3 323 47.7
ATR0807G231 Amborella trichopoda HOM05D002737 ORTHO05D005828 4.5e-58 229.2 325 48.0
AL4G21200 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 1.7e-57 227.3 325 46.8
Peaxi162Scf01324g00241 Petunia axillaris HOM05D002737 ORTHO05D005828 1.7e-57 227.3 336 47.3
AT2G27285 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 5.0e-57 225.7 324 46.6
Sp4g10090 Schrenkiella parvula HOM05D002737 ORTHO05D005828 1.9e-56 223.8 318 46.5
BcaB06g28137 Brassica carinata HOM05D002737 ORTHO05D005828 3.2e-56 223.0 320 45.6
QL07p000712 Quercus lobata HOM05D002737 ORTHO05D005828 3.2e-56 223.0 287 51.2
CDE08G0429 Ceratophyllum demersum HOM05D002737 ORTHO05D003752 9.4e-56 221.5 197 60.9
Peaxi162Scf00010g03312 Petunia axillaris HOM05D002737 ORTHO05D005828 6.1e-55 218.8 277 51.6
Peaxi162Scf01010g00216 Petunia axillaris HOM05D002737 ORTHO05D005828 6.1e-55 218.8 267 53.2
COL.COLO4_22657 Corchorus olitorius HOM05D002737 ORTHO05D005828 1.4e-54 217.6 320 47.8
Aqoxy4G02622 Aquilegia oxysepala HOM05D002737 ORTHO05D005828 1.8e-54 217.2 324 46.9
DCAR_003399 Daucus carota HOM05D002737 ORTHO05D005828 2.3e-54 216.9 321 45.8
Carub.0004s0789 Capsella rubella HOM05D002737 ORTHO05D005828 2.0e-53 213.8 325 45.2
Ciclev10028821m.g Citrus clementina HOM05D002737 ORTHO05D005828 6.3e-52 208.8 333 44.4
Thhalv10002052m.g Eutrema salsugineum HOM05D002737 ORTHO05D005828 1.1e-51 208.0 325 43.4
Carub.0004s0788 Capsella rubella HOM05D002737 ORTHO05D005828 1.2e-50 204.5 319 43.3
CARHR119810 Cardamine hirsuta HOM05D002737 ORTHO05D005828 1.6e-50 204.1 325 43.7
Peaxi162Scf00010g03410 Petunia axillaris HOM05D002737 ORTHO05D005828 8.5e-49 198.4 267 49.1
AL4G21190 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 1.9e-48 197.2 318 43.1
MBI01_g04520_MAGBIO Magnolia biondii HOM05D002737 ORTHO05D005828 9.4e-48 194.9 317 43.8
arahy.Tifrunner.gnm1.ann1.0K86JE Arachis hypogaea HOM05D002737 ORTHO05D005828 2.1e-47 193.7 318 47.5
BcaC02g08257 Brassica carinata HOM05D002737 ORTHO05D005828 2.1e-47 193.7 197 55.8
C04p56640 Brassica napus HOM05D002737 ORTHO05D005828 2.1e-47 193.7 197 55.8
A04p20820 Brassica napus HOM05D002737 ORTHO05D005828 3.6e-47 193.0 206 53.9
BraA04t17655Z Brassica rapa HOM05D002737 ORTHO05D005828 3.6e-47 193.0 206 53.9
Sabra15G0053400 Salix brachista HOM05D002737 ORTHO05D005828 1.4e-46 191.0 320 44.7
HPP92_021234 Vanilla planifolia HOM05D002737 ORTHO05D005828 1.2e-45 188.0 324 41.0
AagrBONN_evm.TU.Sc2ySwM_368.3225 Anthoceros agrestis HOM05D002737 ORTHO05D005828 3.4e-45 186.4 190 57.9
SEGI_17121 Sequoiadendron giganteum HOM05D002737 ORTHO05D005828 5.7e-45 185.7 176 60.2
AT2G27280 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 1.3e-44 184.5 318 42.5
BolC4t27191H Brassica oleracea HOM05D002737 ORTHO05D005828 3.7e-44 183.0 204 52.9
Sabra09G0126900 Salix brachista HOM05D002737 ORTHO05D005828 3.7e-44 183.0 275 46.2
Sabra15G0053700 Salix brachista HOM05D002737 ORTHO05D005828 5.4e-43 179.1 210 52.4
Atru.chr3.3139 Acer truncatum HOM05D002737 ORTHO05D005828 7.0e-43 178.7 212 50.9
Lalb_Chr06g0164021 Lupinus albus HOM05D002737 ORTHO05D005828 1.3e-41 174.5 106 84.0
Pp3c10_11700 Physcomitrium patens HOM05D002737 ORTHO05D005828 8.6e-41 171.8 338 40.8
AL1G53070 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 9.5e-40 168.3 202 51.0
Potri.004G201300 Populus trichocarpa HOM05D002737 ORTHO05D005828 2.8e-39 166.8 321 43.6
AT1G55928 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 4.7e-39 166.0 212 49.1
CiPaw.13G131400 Carya illinoinensis HOM05D002737 ORTHO05D005828 3.4e-37 159.8 243 46.9
Zm00001eb422940 Zea mays HOM05D002737 ORTHO05D005828 1.6e-34 151.0 260 41.5
Mapoly0024s0122 Marchantia polymorpha HOM05D002737 ORTHO05D005828 3.5e-34 149.8 341 36.4
CBR_g45752 Chara braunii HOM05D002737 ORTHO05D005828 1.7e-33 147.5 199 46.7
QL07p000775 Quercus lobata HOM05D002737 ORTHO05D005828 1.7e-33 147.5 265 40.8
Actinidia24241 Actinidia chinensis HOM05D002737 ORTHO05D005828 4.3e-32 142.9 204 49.5
CBR_g6328 Chara braunii HOM05D002737 ORTHO05D005828 2.1e-31 140.6 217 43.8
CARHR119800 Cardamine hirsuta HOM05D002737 ORTHO05D005828 4.7e-31 139.4 169 50.9
Migut.D02400 Erythranthe guttata HOM05D002737 ORTHO05D005828 6.2e-31 139.0 325 35.4
Actinidia24240 Actinidia chinensis HOM05D002737 ORTHO05D005828 3.1e-30 136.7 100 68.0
FAN28G1974 Fragaria x ananassa HOM05D002737 ORTHO05D005828 5.2e-30 136.0 105 65.7
Os04g0440000 Oryza sativa ssp. japonica HOM05D002737 ORTHO05D005828 8.9e-30 135.2 269 41.3
Cre17.g734000 Chlamydomonas reinhardtii HOM05D002737 ORTHO05D005828 2.0e-29 134.0 201 43.3
arahy.Tifrunner.gnm1.ann1.G9FM3T Arachis hypogaea HOM05D002737 ORTHO05D005828 2.2e-28 130.6 116 63.8
Lalb_Chr06g0164011 Lupinus albus HOM05D002737 ORTHO05D005828 3.7e-28 129.8 158 55.1
QL07p000693 Quercus lobata HOM05D002737 ORTHO05D009499 2.4e-27 127.1 214 42.5
HanXRQChr03g0065531 Helianthus annuus HOM05D002737 ORTHO05D005828 2.7e-26 123.6 241 39.4
Gohir.D05G081600 Gossypium hirsutum HOM05D002737 ORTHO05D005828 4.6e-26 122.9 288 38.5
AUR62037790 Chenopodium quinoa HOM05D002737 ORTHO05D005828 1.5e-24 117.9 220 43.2
MD01G1023000 Malus domestica HOM05D002737 ORTHO05D005828 5.6e-24 115.9 101 60.4
AUR62018224 Chenopodium quinoa HOM05D002737 ORTHO05D005828 9.5e-24 115.2 220 43.6
Migut.D02413 Erythranthe guttata HOM05D002737 ORTHO05D005828 3.6e-23 113.2 223 38.6
arahy.Tifrunner.gnm1.ann1.K04YXN Arachis hypogaea HOM05D002737 ORTHO05D023756 4.0e-22 109.8 93 63.4
MCO06G117 Micromonas commoda HOM05D002737 ORTHO05D005828 4.0e-22 109.8 341 33.7
CSS0037550 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 1.7e-20 104.4 96 58.3
Oeu025863.1 Olea europaea HOM05D002737 ORTHO05D005828 1.7e-17 94.4 148 44.6
SHI06201 Sapria himalayana HOM05D002737 ORTHO05D005828 4.7e-15 86.3 74 64.9
QL07p000753 Quercus lobata HOM05D002737 ORTHO05D005828 1.3e-09 68.2 82 50.0
arahy.Tifrunner.gnm1.ann1.1A1X10 Arachis hypogaea HOM05D002737 ORTHO05D005828 1.7e-09 67.8 44 70.5
AagrBONN_evm.TU.Sc2ySwM_368.3239 Anthoceros agrestis HOM05D002737 ORTHO05D005828 2.1e-07 60.8 70 54.3
Haze_00727 Corylus avellana HOM05D002737 ORTHO05D005828 8.1e-07 58.9 143 37.8


User provided reference genes

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