Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 2.5e-187 658.7 347 100.0
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 1.5e-147 526.6 352 82.1
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 4.3e-147 525.0 354 81.4
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 2.8e-146 522.3 355 80.6
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 2.5e-142 509.2 354 77.7
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 8.8e-140 500.7 354 75.7
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 1.5e-139 500.0 357 76.8
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 1.5e-139 500.0 357 76.8
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 7.4e-139 497.7 354 79.1
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 6.3e-138 494.6 353 78.5
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 5.9e-136 488.0 329 79.0
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 7.2e-134 481.1 329 78.1
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 1.2e-133 480.3 336 75.3
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 3.0e-132 475.7 335 76.4
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 1.5e-131 473.4 330 77.3
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 9.7e-131 470.7 340 75.0
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 1.3e-130 470.3 336 75.9
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 1.3e-130 470.3 336 76.8
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 1.3e-130 470.3 340 74.7
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 2.2e-130 469.5 333 75.1
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 6.3e-130 468.0 333 75.1
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 8.2e-130 467.6 320 76.6
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 1.1e-129 467.2 340 74.4
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 1.8e-129 466.5 338 75.1
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 1.8e-129 466.5 320 77.2
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 3.1e-129 465.7 350 71.4
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 4.1e-129 465.3 338 73.4
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 1.2e-128 463.8 340 73.8
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 2.0e-128 463.0 343 74.6
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 3.5e-128 462.2 331 73.7
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 5.9e-128 461.5 312 77.9
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 1.3e-127 460.3 340 73.5
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 1.7e-127 459.9 328 74.7
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 2.2e-127 459.5 321 76.9
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 5.0e-127 458.4 359 70.5
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 1.9e-126 456.4 320 76.2
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 4.2e-126 455.3 351 70.7
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 4.2e-126 455.3 329 74.5
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 5.5e-126 454.9 316 75.6
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 5.5e-126 454.9 332 74.4
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 7.2e-126 454.5 311 75.6
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 7.2e-126 454.5 323 75.9
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 1.2e-125 453.8 305 77.0
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 3.6e-125 452.2 353 70.8
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 6.1e-125 451.4 331 72.8
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 5.2e-124 448.4 335 72.2
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 6.7e-124 448.0 328 73.8
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 1.1e-123 447.2 337 72.1
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 1.1e-123 447.2 328 70.7
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 1.1e-123 447.2 333 71.8
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 1.1e-123 447.2 335 72.2
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 1.5e-123 446.8 329 72.0
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 2.6e-123 446.0 350 71.1
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 7.4e-123 444.5 368 66.8
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 7.4e-123 444.5 368 66.8
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 9.7e-123 444.1 320 72.5
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.3e-122 443.7 328 72.9
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 2.2e-122 443.0 328 73.8
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 2.2e-122 443.0 321 72.6
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 3.7e-122 442.2 342 70.8
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 6.3e-122 441.4 306 76.1
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 6.3e-122 441.4 352 68.8
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 6.3e-122 441.4 350 68.9
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 8.2e-122 441.0 317 75.4
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 8.2e-122 441.0 308 75.3
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 8.2e-122 441.0 328 71.0
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 1.4e-121 440.3 328 70.7
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 1.8e-121 439.9 360 66.4
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 3.1e-121 439.1 350 68.6
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 4.1e-121 438.7 258 88.0
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 4.1e-121 438.7 348 69.3
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 9.1e-121 437.6 255 86.7
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 9.1e-121 437.6 321 74.8
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 2.0e-120 436.4 320 72.8
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 3.5e-120 435.6 334 73.1
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 4.5e-120 435.3 338 71.6
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 5.9e-120 434.9 326 71.5
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 7.7e-120 434.5 334 69.8
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 1.0e-119 434.1 313 73.2
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 1.7e-119 433.3 339 69.9
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 1.7e-119 433.3 285 78.6
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 1.7e-119 433.3 327 72.2
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 2.9e-119 432.6 311 73.6
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 3.8e-119 432.2 287 77.7
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 6.5e-119 431.4 298 74.8
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 6.5e-119 431.4 338 68.9
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 6.5e-119 431.4 338 68.9
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 6.5e-119 431.4 338 68.9
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 6.5e-119 431.4 333 70.9
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 8.5e-119 431.0 314 73.2
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 8.5e-119 431.0 339 69.6
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 8.5e-119 431.0 332 69.3
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 1.1e-118 430.6 285 78.2
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 1.1e-118 430.6 327 71.3
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.1e-118 430.6 333 70.6
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 1.9e-118 429.9 312 72.8
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 2.5e-118 429.5 285 77.5
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 2.5e-118 429.5 296 75.0
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 4.2e-118 428.7 312 73.1
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 9.4e-118 427.6 316 73.1
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 1.2e-117 427.2 326 70.2
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 1.6e-117 426.8 316 72.5
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 1.6e-117 426.8 314 72.3
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 2.1e-117 426.4 282 77.3
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 3.6e-117 425.6 317 72.6
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 6.1e-117 424.9 321 70.4
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 6.1e-117 424.9 321 70.4
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 1.4e-116 423.7 301 74.1
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 3.0e-116 422.5 309 74.4
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 4.0e-116 422.2 326 69.0
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 6.8e-116 421.4 343 66.2
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 2.0e-115 419.9 332 66.9
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 2.6e-115 419.5 350 65.1
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 2.2e-114 416.4 281 77.6
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 2.8e-114 416.0 246 86.2
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 2.8e-114 416.0 332 69.0
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 2.8e-114 416.0 256 81.2
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 1.4e-113 413.7 326 68.1
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.2e-112 410.6 305 73.4
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 4.5e-112 408.7 332 67.8
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 7.7e-112 407.9 316 69.6
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 2.2e-111 406.4 423 56.5
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 2.9e-111 406.0 347 67.1
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 3.8e-111 405.6 328 68.0
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 6.5e-111 404.8 286 75.9
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 1.4e-108 397.1 386 59.3
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 2.6e-107 392.9 298 70.1
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 1.7e-106 390.2 225 87.1
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 3.7e-106 389.0 339 63.7
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 1.4e-105 387.1 306 68.0
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 1.0e-103 380.9 319 66.5
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 1.0e-103 380.9 263 73.0
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 1.7e-103 380.2 319 65.8
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 8.6e-103 377.9 277 70.0
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 5.5e-102 375.2 241 77.2
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 4.0e-100 369.0 354 63.0
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 5.9e-96 355.1 282 63.1
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 1.1e-89 334.3 252 70.6
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 1.3e-87 327.4 250 66.0
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 1.5e-86 323.9 236 69.9
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 3.6e-85 319.3 271 66.1
unitig_8.g3987 Utricularia gibba HOM05D000722 ORTHO05D000590 2.6e-59 233.4 139 82.0
A09p23220 Brassica napus HOM05D004794 ORTHO05D005875 1.9e-57 227.3 156 75.0
BraA09t37925Z Brassica rapa HOM05D004794 ORTHO05D005875 4.2e-57 226.1 159 73.6
BcaC03g16992 Brassica carinata HOM05D004794 ORTHO05D005875 2.4e-52 210.3 168 64.9
BolC2t10985H Brassica oleracea HOM05D004794 ORTHO05D005875 2.4e-52 210.3 168 64.9
Cpa.g.sc65.92 Carica papaya HOM05D004794 ORTHO05D005875 1.3e-47 194.5 108 91.7
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 4.3e-38 162.9 102 82.4
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 7.4e-38 162.2 99 83.8
C09p29960 Brassica napus HOM05D004794 ORTHO05D039171 3.9e-31 139.8 134 56.0
SEGI_19547 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.1e-30 138.3 119 63.0
BcaC04g21603 Brassica carinata HOM05D004794 ORTHO05D039171 3.9e-23 113.2 97 62.9
unitig_8.g3988 Utricularia gibba HOM05D004794 ORTHO05D005875 6.3e-21 105.9 61 86.9
BolC9t55859H Brassica oleracea HOM05D004794 ORTHO05D005875 5.3e-20 102.8 64 82.8


User provided reference genes

Program Settings