Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 1.0e-198 696.4 335 100.0
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 3.0e-177 625.2 342 88.3
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 7.3e-176 620.5 338 88.5
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 9.6e-176 620.2 339 87.6
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 1.2e-175 619.8 339 88.8
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 1.6e-175 619.4 340 89.1
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 1.6e-175 619.4 342 87.1
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 5.8e-173 610.9 336 88.1
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 6.6e-169 597.4 335 86.0
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 6.2e-167 590.9 340 84.7
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 8.1e-167 590.5 340 84.7
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 6.9e-166 587.4 337 84.9
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 3.4e-157 558.5 354 78.0
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 3.8e-156 555.1 349 77.4
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 4.9e-156 554.7 335 80.3
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 6.4e-156 554.3 345 78.6
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 3.2e-155 552.0 353 76.5
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 3.2e-155 552.0 350 77.4
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 3.2e-155 552.0 348 77.6
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 1.6e-154 549.7 358 76.0
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 3.5e-154 548.5 335 80.3
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 7.9e-154 547.4 348 77.3
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 8.7e-153 543.9 356 75.0
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 5.6e-152 541.2 363 75.2
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 5.6e-152 541.2 356 74.7
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 3.7e-151 538.5 353 74.2
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 3.7e-151 538.5 352 75.3
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 4.8e-151 538.1 348 76.7
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 6.2e-151 537.7 351 75.5
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 1.8e-150 536.2 346 76.6
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 1.2e-149 533.5 335 76.7
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 2.0e-149 532.7 360 74.2
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 5.8e-149 531.2 340 75.9
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 5.8e-149 531.2 348 74.4
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 1.0e-148 530.4 351 75.2
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 1.3e-148 530.0 353 73.7
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 4.9e-148 528.1 334 76.3
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 6.5e-148 527.7 342 74.9
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 6.5e-148 527.7 349 73.9
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 6.5e-148 527.7 329 78.4
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 8.4e-148 527.3 349 73.9
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.1e-147 526.9 370 70.8
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 2.5e-147 525.8 345 75.4
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 2.5e-147 525.8 353 72.8
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 7.1e-147 524.2 344 73.8
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 2.7e-146 522.3 354 71.8
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 3.5e-146 521.9 355 72.4
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 3.5e-146 521.9 355 72.4
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 3.5e-146 521.9 342 75.4
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 4.6e-146 521.5 372 70.4
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 7.9e-146 520.8 349 73.4
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 2.3e-145 519.2 342 74.6
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 6.7e-145 517.7 348 74.4
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 1.1e-144 516.9 342 74.0
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 3.3e-144 515.4 347 74.1
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 7.4e-144 514.2 343 72.6
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 7.4e-144 514.2 346 72.3
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 2.1e-143 512.7 342 74.0
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 6.3e-143 511.1 346 71.7
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 6.3e-143 511.1 374 70.6
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.1e-142 510.4 373 69.2
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 3.1e-142 508.8 349 72.2
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 4.1e-142 508.4 355 69.9
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 4.1e-142 508.4 345 72.2
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 6.9e-142 507.7 348 71.3
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 1.5e-141 506.5 350 71.7
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 2.6e-141 505.8 339 72.6
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.6e-141 505.8 343 72.9
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.6e-141 505.8 343 73.2
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.4e-141 505.4 345 71.0
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 5.9e-141 504.6 342 71.6
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 1.0e-140 503.8 349 71.1
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 3.8e-140 501.9 349 71.3
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.1e-139 500.4 340 73.5
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 5.5e-139 498.0 338 72.5
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 7.2e-139 497.7 344 71.5
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.2e-138 496.9 343 72.6
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 3.6e-138 495.4 340 72.4
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 1.3e-137 493.4 334 72.5
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 1.8e-137 493.0 343 72.3
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 1.8e-137 493.0 363 70.0
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 2.3e-137 492.7 344 71.2
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 6.7e-137 491.1 359 68.5
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.1e-136 490.3 335 73.7
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 1.5e-136 490.0 344 71.2
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 3.3e-136 488.8 344 72.1
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 4.3e-136 488.4 344 70.9
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 1.3e-135 486.9 343 71.1
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 3.7e-135 485.3 336 72.0
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 4.8e-135 485.0 336 71.4
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 4.8e-135 485.0 336 71.4
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 6.3e-135 484.6 334 72.2
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 8.2e-135 484.2 334 71.9
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 1.1e-134 483.8 344 71.5
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 1.4e-134 483.4 344 69.8
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 5.3e-134 481.5 352 69.6
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 1.2e-133 480.3 341 69.8
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 2.0e-133 479.6 346 70.2
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 6.5e-132 474.6 336 71.1
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 1.1e-131 473.8 336 71.1
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.9e-131 473.0 362 68.0
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 2.5e-131 472.6 334 70.7
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 2.7e-130 469.2 336 70.5
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 7.9e-130 467.6 365 64.1
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 7.9e-130 467.6 323 70.0
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 3.0e-129 465.7 352 67.6
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 1.5e-128 463.4 332 71.1
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 4.4e-128 461.8 372 60.2
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 9.7e-128 460.7 341 66.9
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 1.7e-127 459.9 325 71.7
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 4.8e-127 458.4 346 68.5
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 4.8e-127 458.4 333 68.5
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 1.8e-126 456.4 334 69.8
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 1.8e-126 456.4 333 69.7
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 1.5e-125 453.4 351 63.0
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 2.5e-123 446.0 353 64.9
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.2e-122 443.7 306 70.9
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 1.6e-122 443.4 315 71.4
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 1.8e-121 439.9 408 57.4
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 3.0e-121 439.1 516 49.6
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 2.0e-120 436.4 364 61.3
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 2.0e-120 436.4 328 67.4
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 7.4e-120 434.5 319 69.9
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 1.1e-118 430.6 352 64.5
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 5.0e-116 421.8 333 64.3
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 3.2e-115 419.1 421 55.3
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 1.8e-113 413.3 355 60.0
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 2.6e-112 409.5 403 55.8
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 8.2e-111 404.4 322 62.1
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 8.5e-108 394.4 363 59.5
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 4.2e-107 392.1 310 66.5
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 3.4e-104 382.5 361 55.1
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 6.5e-100 368.2 327 59.6
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 6.1e-98 361.7 340 57.1
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.5e-88 330.5 230 69.1
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 2.4e-86 323.2 376 47.6
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 7.0e-86 321.6 376 47.6
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 7.0e-78 295.0 164 82.9
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 1.1e-75 287.7 184 79.9
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.5e-75 287.3 206 73.8
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 2.5e-75 286.6 299 53.8
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 6.8e-73 278.5 378 42.9
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 4.9e-71 272.3 360 44.7
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 5.4e-70 268.9 339 42.5
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 1.3e-68 264.2 238 53.8
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 1.2e-66 257.7 224 64.3
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 2.8e-66 256.5 390 39.0
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 4.7e-66 255.8 228 58.8
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 4.7e-66 255.8 228 58.8
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 1.7e-63 247.3 204 64.7
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 3.2e-54 216.5 133 82.7
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 1.5e-51 207.6 169 66.3
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 9.3e-46 188.3 128 64.8
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 1.4e-38 164.5 102 76.5
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 6.0e-37 159.1 358 34.4
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 4.3e-35 152.9 341 33.1
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 2.0e-32 144.1 122 59.0
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 2.1e-29 134.0 72 79.2
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 1.3e-18 98.2 78 67.9
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 2.2e-15 87.4 63 66.7
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 1.5e-08 64.7 33 75.8


User provided reference genes

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