Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 5.4e-44 180.6 93 100.0
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 2.7e-27 125.2 93 71.0
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 1.1e-25 119.8 93 66.7
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 2.8e-24 115.2 93 67.7
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 2.0e-22 109.0 94 62.8
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 4.4e-22 107.8 93 64.5
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 9.9e-22 106.7 93 64.5
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 6.6e-18 94.0 96 57.3
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 6.6e-18 94.0 96 57.3
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 9.6e-17 90.1 96 59.4
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 2.2e-13 79.0 90 51.1
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.9e-13 77.8 87 51.7
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.1e-12 76.6 87 50.6
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.9e-12 75.9 87 50.6
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 1.2e-11 73.2 90 48.9
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 2.1e-11 72.4 89 48.3
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 4.6e-11 71.2 88 54.5
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 6.0e-11 70.9 88 47.7
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 6.0e-11 70.9 88 47.7
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 7.8e-11 70.5 91 48.4
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.7e-10 69.3 91 48.4
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 3.0e-10 68.6 89 47.2
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 5.1e-10 67.8 91 46.2
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 5.1e-10 67.8 98 48.0
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 6.6e-10 67.4 91 45.1
Gohir.A01G209200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 8.7e-10 67.0 98 46.9
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.1e-09 66.6 98 43.9
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.1e-09 66.6 100 47.0
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.5e-09 66.2 96 37.5
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 1.9e-09 65.9 45 66.7
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.9e-09 65.9 45 66.7
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.9e-09 65.9 99 46.5
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.9e-09 65.9 99 46.5
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 2.5e-09 65.5 91 47.3
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.5e-09 65.5 45 66.7
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.5e-09 65.5 45 66.7
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 2.5e-09 65.5 89 41.6
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 3.3e-09 65.1 88 46.6
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.3e-09 65.1 76 44.7
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 4.3e-09 64.7 52 55.8
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 4.3e-09 64.7 92 48.9
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 5.6e-09 64.3 89 41.6
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 5.6e-09 64.3 90 42.2
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 5.6e-09 64.3 91 42.9
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 7.3e-09 63.9 98 42.9
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 7.3e-09 63.9 98 44.9
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 7.3e-09 63.9 89 47.2
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 7.3e-09 63.9 83 43.4
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 9.6e-09 63.5 90 42.2
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 9.6e-09 63.5 90 42.2
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 9.6e-09 63.5 93 43.0
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 9.6e-09 63.5 92 44.6
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 1.6e-08 62.8 91 37.4
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 1.6e-08 62.8 91 37.4
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.6e-08 62.8 98 39.8
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 1.6e-08 62.8 91 44.0
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 1.6e-08 62.8 87 46.0
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 2.1e-08 62.4 90 41.1
Gorai.002G242500 Gossypium raimondii HOM05D003745 ORTHO05D004215 2.1e-08 62.4 99 46.5
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 2.1e-08 62.4 89 44.9
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 2.1e-08 62.4 84 44.0
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 2.1e-08 62.4 87 44.8
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 2.8e-08 62.0 88 42.0
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 2.8e-08 62.0 88 44.3
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 2.8e-08 62.0 47 63.8
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 3.6e-08 61.6 100 40.0
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 3.6e-08 61.6 94 44.7
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.6e-08 61.6 41 68.3
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.6e-08 61.6 45 62.2
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 4.8e-08 61.2 88 40.9
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 4.8e-08 61.2 87 42.5
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 4.8e-08 61.2 98 43.9
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 4.8e-08 61.2 89 44.9
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 4.8e-08 61.2 96 38.5
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 4.8e-08 61.2 97 42.3
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 6.2e-08 60.8 64 53.1
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 8.1e-08 60.5 87 41.4
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 8.1e-08 60.5 41 68.3
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 8.1e-08 60.5 90 40.0
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 8.1e-08 60.5 56 50.0
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 1.1e-07 60.1 65 49.2
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 1.1e-07 60.1 81 43.2
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.1e-07 60.1 85 44.7
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.4e-07 59.7 98 43.9
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 1.4e-07 59.7 88 43.2
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 1.4e-07 59.7 41 68.3
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 1.4e-07 59.7 88 44.3
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 1.8e-07 59.3 87 42.5
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.8e-07 59.3 81 43.2
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 2.4e-07 58.9 48 56.2
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 2.4e-07 58.9 95 41.1
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 2.4e-07 58.9 87 43.7
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.1e-07 58.5 89 42.7
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.1e-07 58.5 89 42.7
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 3.1e-07 58.5 64 48.4
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 4.0e-07 58.2 93 40.9
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 4.0e-07 58.2 98 36.7
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 4.0e-07 58.2 89 48.3
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 4.0e-07 58.2 69 47.8
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 5.3e-07 57.8 94 41.5
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 5.3e-07 57.8 91 42.9
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 5.3e-07 57.8 60 48.3
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 5.3e-07 57.8 51 56.9
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 5.3e-07 57.8 79 46.8
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 6.9e-07 57.4 87 40.2
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 6.9e-07 57.4 87 40.2
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 6.9e-07 57.4 87 37.9
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 9.0e-07 57.0 99 40.4
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 9.0e-07 57.0 91 36.3
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 9.0e-07 57.0 46 56.5
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 9.0e-07 57.0 91 38.5
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 9.0e-07 57.0 101 43.6
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 9.0e-07 57.0 92 39.1
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 9.0e-07 57.0 65 46.2
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.2e-06 56.6 95 40.0
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 1.2e-06 56.6 41 65.9
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 1.2e-06 56.6 95 42.1
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 1.2e-06 56.6 41 63.4
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 1.2e-06 56.6 97 41.2
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.2e-06 56.6 88 38.6
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 1.5e-06 56.2 91 37.4
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 1.5e-06 56.2 89 43.8
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 1.5e-06 56.2 92 34.8
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.5e-06 56.2 93 38.7
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 2.0e-06 55.8 87 41.4
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 2.0e-06 55.8 47 57.4
Nitab4.5_0010833g0010 Nicotiana tabacum HOM05D003745 ORTHO05D004215 2.0e-06 55.8 90 38.9
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 2.6e-06 55.5 102 41.2
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 2.6e-06 55.5 88 44.3
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 3.4e-06 55.1 42 64.3
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 3.4e-06 55.1 90 42.2
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 3.4e-06 55.1 97 38.1
Sopen10g033060 Solanum pennellii HOM05D003745 ORTHO05D004215 3.4e-06 55.1 84 36.9
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 4.4e-06 54.7 87 44.8
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 5.8e-06 54.3 87 39.1
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 5.8e-06 54.3 64 48.4
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 7.6e-06 53.9 87 42.5
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 7.6e-06 53.9 46 56.5
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 7.6e-06 53.9 44 54.5
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 9.9e-06 53.5 98 42.9
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 9.9e-06 53.5 95 36.8
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 9.9e-06 53.5 95 36.8
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 9.9e-06 53.5 98 42.9
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 9.9e-06 53.5 91 42.9
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 9.9e-06 53.5 102 37.3
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 9.9e-06 53.5 95 37.9


User provided reference genes

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