Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 2.0e-178 629.0 319 100.0
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 1.2e-140 503.4 318 80.5
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 2.1e-140 502.7 318 79.2
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 4.0e-139 498.4 315 81.3
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 2.9e-137 492.3 323 77.7
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 1.1e-133 480.3 309 78.6
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 4.1e-128 461.8 316 74.7
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 7.1e-128 461.1 316 74.4
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.1e-127 459.5 304 75.3
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 4.6e-127 458.4 295 76.3
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 4.6e-127 458.4 295 76.3
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 1.3e-126 456.8 304 76.6
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 1.7e-126 456.4 309 74.4
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 2.3e-126 456.1 295 75.9
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 3.0e-126 455.7 301 74.1
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 6.6e-126 454.5 309 74.1
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 1.1e-125 453.8 306 73.9
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 1.5e-125 453.4 296 75.0
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 3.3e-125 452.2 302 74.2
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 5.6e-125 451.4 318 72.0
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 7.3e-125 451.1 295 75.9
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 9.6e-125 450.7 304 75.7
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 1.6e-124 449.9 304 75.3
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 8.9e-123 444.1 304 72.7
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 1.5e-122 443.4 314 69.4
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 2.0e-122 443.0 309 72.2
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 5.8e-122 441.4 305 69.8
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 5.8e-122 441.4 305 69.8
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 1.3e-121 440.3 295 71.5
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.7e-121 439.9 302 72.2
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 2.2e-121 439.5 285 76.1
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 2.9e-121 439.1 305 69.5
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 2.9e-121 439.1 302 70.5
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 8.4e-121 437.6 309 69.9
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 1.9e-120 436.4 303 71.3
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.4e-120 436.0 305 69.2
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 2.4e-120 436.0 303 70.6
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 4.2e-120 435.3 296 70.3
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 5.4e-120 434.9 299 69.9
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 7.1e-120 434.5 302 71.2
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 7.1e-120 434.5 305 68.5
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 9.3e-120 434.1 304 71.4
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.2e-119 433.7 305 68.9
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 2.7e-119 432.6 309 69.9
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 1.7e-118 429.9 304 71.1
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 1.7e-118 429.9 302 69.2
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 2.3e-118 429.5 304 70.1
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 3.9e-118 428.7 303 69.3
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 8.7e-118 427.6 305 69.5
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 1.5e-117 426.8 319 69.6
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 5.6e-117 424.9 302 69.9
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 5.6e-117 424.9 305 68.5
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 2.1e-116 422.9 300 68.3
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 2.1e-116 422.9 296 69.3
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 3.6e-116 422.2 308 68.2
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 6.2e-116 421.4 296 68.6
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 1.1e-115 420.6 296 68.9
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 3.1e-115 419.1 296 69.9
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 4.0e-115 418.7 316 67.1
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 1.2e-114 417.2 298 68.5
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 1.5e-114 416.8 296 70.3
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 4.4e-114 415.2 386 56.5
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 5.8e-114 414.8 351 61.0
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 5.8e-114 414.8 311 67.2
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 9.9e-114 414.1 309 65.4
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 1.7e-113 413.3 308 64.9
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 2.9e-113 412.5 296 69.3
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 2.9e-113 412.5 302 67.2
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 3.8e-113 412.1 312 68.3
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 4.9e-113 411.8 305 66.9
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 8.4e-113 411.0 305 69.8
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 8.4e-113 411.0 337 62.9
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.9e-112 409.8 305 68.9
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 2.4e-112 409.5 305 66.2
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 2.4e-112 409.5 307 65.8
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 9.3e-112 407.5 257 77.0
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 9.3e-112 407.5 305 68.2
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 1.2e-111 407.1 305 65.6
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 2.1e-111 406.4 305 64.9
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 2.1e-111 406.4 295 67.5
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 2.7e-111 406.0 294 67.3
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 2.7e-111 406.0 297 68.7
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 3.5e-111 405.6 294 68.0
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 3.5e-111 405.6 305 64.9
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 3.5e-111 405.6 305 65.9
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 3.5e-111 405.6 309 66.7
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 7.9e-111 404.4 305 65.2
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 1.7e-110 403.3 299 66.6
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 2.3e-110 402.9 304 64.5
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 2.3e-110 402.9 298 67.1
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 3.9e-110 402.1 296 67.2
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 5.1e-110 401.7 305 64.9
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 5.1e-110 401.7 305 64.9
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 6.6e-110 401.4 305 65.6
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 6.6e-110 401.4 297 67.3
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 8.7e-110 401.0 301 67.4
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 1.9e-109 399.8 271 70.8
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 1.9e-109 399.8 290 67.6
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 2.5e-109 399.4 308 66.6
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 2.5e-109 399.4 310 64.2
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 4.3e-109 398.7 287 67.9
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 4.3e-109 398.7 339 61.4
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 5.6e-109 398.3 299 66.9
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 1.6e-108 396.7 295 67.1
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 1.6e-108 396.7 304 66.4
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 2.1e-108 396.4 279 68.1
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.8e-108 396.0 305 65.2
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 3.6e-108 395.6 273 71.4
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 2.4e-107 392.9 301 64.1
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 1.2e-106 390.6 342 59.1
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 3.4e-106 389.0 259 73.7
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 5.8e-106 388.3 333 60.4
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 1.7e-105 386.7 307 62.5
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.7e-105 386.7 283 68.9
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 7.1e-104 381.3 262 69.1
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 7.1e-104 381.3 301 65.4
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 1.2e-103 380.6 288 65.3
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 1.8e-102 376.7 322 61.8
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 1.1e-101 374.0 270 65.2
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 4.3e-101 372.1 301 63.8
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 4.3e-101 372.1 299 61.9
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 1.6e-100 370.2 317 59.0
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 4.8e-100 368.6 300 62.0
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 1.3e-97 360.5 310 60.0
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 7.1e-96 354.8 299 59.9
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 2.7e-95 352.8 293 63.1
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 8.7e-94 347.8 285 58.9
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 1.2e-90 337.4 283 58.3
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 1.3e-89 334.0 222 70.7
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 9.0e-83 311.2 230 67.8
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 1.0e-81 307.8 295 52.9
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 1.4e-80 303.9 290 55.2
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 2.7e-79 299.7 279 55.2
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 7.9e-79 298.1 259 57.1
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 5.1e-78 295.4 279 50.5
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 4.8e-76 288.9 280 53.2
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 2.4e-75 286.6 204 69.1
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 9.1e-75 284.6 295 51.2
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 6.5e-73 278.5 290 51.4
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 3.2e-72 276.2 273 51.3
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 3.2e-72 276.2 323 46.4
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 7.2e-72 275.0 308 51.9
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 2.1e-71 273.5 295 48.1
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 3.6e-71 272.7 195 72.3
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 3.9e-70 269.2 228 58.3
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 8.8e-70 268.1 219 64.8
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 3.6e-63 246.1 231 53.2
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 6.7e-62 241.9 150 77.3
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 4.1e-59 232.6 327 48.3
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 6.5e-57 225.3 177 61.6
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 1.5e-56 224.2 182 60.4
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 1.6e-55 220.7 147 69.4
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 3.6e-55 219.5 210 50.5
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 1.8e-51 207.2 214 51.4
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 4.7e-47 192.6 296 34.8
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 4.4e-45 186.0 151 60.3
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 9.2e-35 151.8 273 33.0
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 1.2e-31 141.4 314 29.6
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 4.0e-30 136.3 124 59.7
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 1.7e-28 131.0 107 63.6
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 8.6e-25 118.6 211 33.6
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 9.5e-24 115.2 120 52.5
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 4.9e-20 102.8 76 71.1
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 6.4e-20 102.4 250 32.0
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 2.4e-19 100.5 287 25.8
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.7e-12 77.8 184 34.8
unitig_747.g21459 Utricularia gibba HOM05D001952 ORTHO05D005047 6.6e-09 65.9 45 66.7
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 6.2e-07 59.3 54 53.7


User provided reference genes

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