Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0021204 Lotus japonicus HOM05D006795 ORTHO05D008573 1.3e-136 489.6 225 100.0
Medtr1g102470 Medicago truncatula HOM05D006795 ORTHO05D008573 1.0e-112 410.2 219 84.5
Glyma.20G151900 Glycine max HOM05D006795 ORTHO05D008573 6.5e-112 407.5 221 82.8
Glyma.10G242200 Glycine max HOM05D006795 ORTHO05D008573 4.2e-111 404.8 221 83.3
arahy.Tifrunner.gnm1.ann1.ATT3CU Arachis hypogaea HOM05D006795 ORTHO05D008573 5.5e-111 404.4 220 84.1
arahy.Tifrunner.gnm1.ann1.939HGU Arachis hypogaea HOM05D006795 ORTHO05D008573 1.2e-110 403.3 220 84.1
TPR.G26107 Trifolium pratense HOM05D006795 ORTHO05D008573 1.9e-103 379.4 223 81.2
Dinv07998 Davidia involucrata HOM05D006795 ORTHO05D008573 9.8e-100 367.1 230 73.0
Lalb_Chr02g0140771 Lupinus albus HOM05D006795 ORTHO05D008573 2.9e-99 365.5 221 76.0
CANSAT21G1655 Cannabis sativa HOM05D006795 ORTHO05D008573 2.4e-98 362.5 220 75.5
COL.COLO4_14197 Corchorus olitorius HOM05D006795 ORTHO05D008573 2.4e-98 362.5 227 71.4
Haze_13816 Corylus avellana HOM05D006795 ORTHO05D008573 3.2e-98 362.1 227 72.7
CiPaw.03G097900 Carya illinoinensis HOM05D006795 ORTHO05D008573 2.0e-97 359.4 225 73.3
CSS0024840 Camellia sinensis var. sinensis HOM05D006795 ORTHO05D008573 4.6e-97 358.2 227 71.8
MD01G1187300 Malus domestica HOM05D006795 ORTHO05D008573 5.0e-96 354.8 221 72.9
Potri.015G132300 Populus trichocarpa HOM05D006795 ORTHO05D008573 8.6e-96 354.0 225 70.7
MD07G1259600 Malus domestica HOM05D006795 ORTHO05D008573 1.2e-94 350.1 216 73.1
PGR042G2278 Punica granatum HOM05D006795 ORTHO05D008573 1.2e-94 350.1 225 72.4
QL12p039358 Quercus lobata HOM05D006795 ORTHO05D008573 1.2e-94 350.1 222 72.1
FvH4_7g28300 Fragaria vesca HOM05D006795 ORTHO05D008573 2.1e-94 349.4 220 70.9
Thecc.03G163300 Theobroma cacao HOM05D006795 ORTHO05D008573 3.6e-94 348.6 223 70.0
Manes.06G149000 Manihot esculenta HOM05D006795 ORTHO05D008573 1.4e-93 346.7 226 69.0
Cpa.g.sc3.258 Carica papaya HOM05D006795 ORTHO05D008573 4.0e-93 345.1 224 71.0
TWI39G0269 Tripterygium wilfordii HOM05D006795 ORTHO05D008573 5.2e-93 344.7 224 69.6
Prupe.2G283700 Prunus persica HOM05D006795 ORTHO05D008573 1.5e-92 343.2 220 73.6
FAN06G0634 Fragaria x ananassa HOM05D001585 ORTHO05D001677 2.0e-92 342.8 218 70.6
FAN06G3003 Fragaria x ananassa HOM05D001585 ORTHO05D001677 2.0e-92 342.8 218 70.6
Lj8A35T83 Lonicera japonica HOM05D006795 ORTHO05D008573 2.0e-92 342.8 221 71.9
Nn1g01176 Nelumbo nucifera HOM05D006795 ORTHO05D008573 3.4e-92 342.0 227 68.3
Peaxi162Scf00132g00138 Petunia axillaris HOM05D006795 ORTHO05D008573 4.4e-92 341.7 237 68.4
Psat6g202120 Pisum sativum HOM05D006795 ORTHO05D008573 5.8e-92 341.3 186 83.9
Psat6g202920 Pisum sativum HOM05D006795 ORTHO05D008573 5.8e-92 341.3 186 83.9
Eucgr.A02872 Eucalyptus grandis HOM05D006795 ORTHO05D008573 7.5e-92 340.9 228 70.2
Sc13g0008130 Simmondsia chinensis HOM05D006795 ORTHO05D008573 7.5e-92 340.9 224 69.6
FAN10G2418 Fragaria x ananassa HOM05D006795 ORTHO05D008573 1.7e-91 339.7 220 70.5
vmacro06760 Vaccinium macrocarpon HOM05D006795 ORTHO05D008573 2.2e-91 339.3 220 71.4
CAN.G1187.5 Capsicum annuum HOM05D006795 ORTHO05D008573 3.7e-91 338.6 225 70.7
AUR62016086 Chenopodium quinoa HOM05D006795 ORTHO05D008573 3.7e-91 338.6 229 69.0
RcHm_v2.0_Chr1g0375271 Rosa chinensis HOM05D006795 ORTHO05D008573 3.7e-91 338.6 217 70.0
Sabra15G0145100 Salix brachista HOM05D006795 ORTHO05D008573 6.4e-91 337.8 227 67.8
Actinidia31794 Actinidia chinensis HOM05D006795 ORTHO05D008573 1.1e-90 337.0 228 69.3
TAR636G0045 Trochodendron aralioides HOM05D006795 ORTHO05D008573 1.9e-90 336.3 270 59.6
Aqoxy7G00570 Aquilegia oxysepala HOM05D006795 ORTHO05D008573 2.4e-90 335.9 225 69.8
BcaC03g14579 Brassica carinata HOM05D006795 ORTHO05D008573 3.2e-90 335.5 220 68.6
Ciclev10005807m.g Citrus clementina HOM05D006795 ORTHO05D008573 3.2e-90 335.5 226 68.6
Duzib068G1417 Durio zibethinus HOM05D006795 ORTHO05D008573 3.2e-90 335.5 231 67.1
Solyc11g072290.3 Solanum lycopersicum HOM05D006795 ORTHO05D008573 9.2e-90 334.0 228 68.0
Thhalv10014608m.g Eutrema salsugineum HOM05D006795 ORTHO05D008573 1.2e-89 333.6 220 67.7
Atru.chr1.614 Acer truncatum HOM05D006795 ORTHO05D008573 1.0e-88 330.5 229 69.9
ClCG11G008970 Citrullus lanatus HOM05D006795 ORTHO05D008573 1.0e-88 330.5 230 67.4
Hund04657 Selenicereus undatus HOM05D006795 ORTHO05D008573 1.0e-88 330.5 229 68.6
C02p20240 Brassica napus HOM05D006795 ORTHO05D008573 1.7e-88 329.7 217 69.1
Cc02_g03780 Coffea canephora HOM05D006795 ORTHO05D008573 1.7e-88 329.7 220 69.5
PSO478G2429 Papaver somniferum HOM05D006795 ORTHO05D008573 3.0e-88 328.9 227 67.8
PSO782G4689 Papaver somniferum HOM05D006795 ORTHO05D008573 3.0e-88 328.9 227 67.8
BolC2t08156H Brassica oleracea HOM05D006795 ORTHO05D008573 3.9e-88 328.6 217 68.7
Aa31LG3G8130 Aethionema arabicum HOM05D006795 ORTHO05D008573 1.1e-87 327.0 217 66.4
THA.LOC104825075 Tarenaya hassleriana HOM05D006795 ORTHO05D008573 1.1e-87 327.0 217 68.7
A02p12140 Brassica napus HOM05D006795 ORTHO05D008573 1.5e-87 326.6 217 68.2
ECA238G4708 Erigeron canadensis HOM05D006795 ORTHO05D008573 4.3e-87 325.1 220 68.6
Nitab4.5_0001589g0020 Nicotiana tabacum HOM05D006795 ORTHO05D008573 5.6e-87 324.7 225 68.4
BcaB08g35519 Brassica carinata HOM05D006795 ORTHO05D008573 7.3e-87 324.3 217 67.7
BraA02t06278Z Brassica rapa HOM05D006795 ORTHO05D008573 1.6e-86 323.2 224 66.5
unitig_0.g1164 Utricularia gibba HOM05D006795 ORTHO05D008573 2.1e-86 322.8 230 65.7
Migut.F00416 Erythranthe guttata HOM05D006795 ORTHO05D008573 1.4e-85 320.1 221 66.5
Nitab4.5_0000205g0150 Nicotiana tabacum HOM05D006795 ORTHO05D008573 1.4e-85 320.1 225 68.0
Gohir.A09G178600 Gossypium hirsutum HOM05D006795 ORTHO05D008573 1.8e-85 319.7 224 66.1
Gohir.D09G174200 Gossypium hirsutum HOM05D006795 ORTHO05D008573 2.3e-85 319.3 224 66.1
Lsat_1_v5_gn_2_129741 Lactuca sativa HOM05D006795 ORTHO05D008573 3.1e-85 318.9 220 68.2
CsaV3_2G010830 Cucumis sativus L. HOM05D006795 ORTHO05D008573 8.9e-85 317.4 224 66.1
EL10Ac3g05773 Beta vulgaris HOM05D006795 ORTHO05D008573 2.0e-84 316.2 226 65.9
A10p09570 Brassica napus HOM05D006795 ORTHO05D008573 2.0e-84 316.2 228 64.5
BraA10t43032Z Brassica rapa HOM05D006795 ORTHO05D008573 2.0e-84 316.2 228 64.5
AUR62035033 Chenopodium quinoa HOM05D006795 ORTHO05D008573 7.5e-84 314.3 246 62.6
FAN01G1007 Fragaria x ananassa HOM05D006795 ORTHO05D008573 1.6e-81 306.6 234 62.4
Rhsim03G0172800 Rhododendron simsii HOM05D006795 ORTHO05D008573 2.1e-81 306.2 295 53.2
ATR1145G092 Amborella trichopoda HOM05D006795 ORTHO05D008573 2.7e-81 305.8 236 59.7
Manes.06G139000 Manihot esculenta HOM05D006795 ORTHO05D008573 3.5e-81 305.4 197 69.5
SEGI_28069 Sequoiadendron giganteum HOM05D006795 ORTHO05D008573 6.0e-81 304.7 223 62.8
HPP92_005470 Vanilla planifolia HOM05D006795 ORTHO05D008573 3.9e-80 302.0 222 63.1
Sed0014900 Sechium edule HOM05D006795 ORTHO05D008573 8.6e-80 300.8 270 56.3
Ca_10834_v3 Cicer arietinum L. HOM05D006795 ORTHO05D008573 1.1e-79 300.4 219 68.9
FAN03G1859 Fragaria x ananassa HOM05D001585 ORTHO05D001677 9.5e-79 297.4 192 70.8
FAN03G1183 Fragaria x ananassa HOM05D001585 ORTHO05D001677 2.8e-78 295.8 192 70.3
GSVIVG01018489001 Vitis vinifera HOM05D006795 ORTHO05D008573 4.7e-78 295.0 196 71.4
Mapoly0020s0061 Marchantia polymorpha HOM05D006795 ORTHO05D008573 1.4e-77 293.5 231 58.9
MSTRG.119 Avicennia marina HOM05D006795 ORTHO05D008573 1.5e-76 290.0 197 67.0
Oeu021736.1 Olea europaea HOM05D006795 ORTHO05D008573 8.4e-75 284.3 190 71.6
CDE06G1038 Ceratophyllum demersum HOM05D006795 ORTHO05D008573 1.9e-74 283.1 189 66.7
AT5G51700 Arabidopsis thaliana HOM05D006795 ORTHO05D008573 1.2e-73 280.4 184 69.6
Gorai.006G196200 Gossypium raimondii HOM05D006795 ORTHO05D008573 1.2e-73 280.4 203 64.5
Actinidia03085 Actinidia chinensis HOM05D006795 ORTHO05D008573 2.1e-73 279.6 186 68.8
SGA_v2.0_scaffold2G01112 Striga asiatica HOM05D006795 ORTHO05D008573 2.7e-73 279.3 198 68.7
Sopen11g029960 Solanum pennellii HOM05D006795 ORTHO05D008573 4.6e-73 278.5 193 67.9
VMungo0720G2517 Vigna mungo HOM05D006795 ORTHO05D008573 7.8e-73 277.7 159 82.4
BcaB05g23990 Brassica carinata HOM05D006795 ORTHO05D008573 1.0e-72 277.3 194 66.0
Oeu042417.2 Olea europaea HOM05D006795 ORTHO05D008573 1.0e-72 277.3 223 62.3
CARHR264540 Cardamine hirsuta HOM05D006795 ORTHO05D008573 5.1e-72 275.0 194 63.9
Ah.13g067570 Amaranthus hybridus HOM05D006795 ORTHO05D008573 1.9e-71 273.1 190 65.8
AL8G25950 Arabidopsis lyrata HOM05D006795 ORTHO05D008573 1.6e-70 270.0 186 64.5
Sp6g13920 Schrenkiella parvula HOM05D006795 ORTHO05D008573 3.6e-70 268.9 186 65.1
Os02g0535400 Oryza sativa ssp. japonica HOM05D006795 ORTHO05D008573 1.8e-69 266.5 190 65.3
Zm00001eb242890 Zea mays HOM05D006795 ORTHO05D008573 4.0e-69 265.4 186 64.5
Carub.0008s1172 Capsella rubella HOM05D006795 ORTHO05D008573 8.9e-69 264.2 186 63.4
SalBow4G0392 Salvia bowleyana HOM05D006795 ORTHO05D008573 5.8e-68 261.5 225 59.1
SalBow4G1076 Salvia bowleyana HOM05D006795 ORTHO05D008573 5.8e-68 261.5 225 59.1
TAR629G1442 Trochodendron aralioides HOM05D006795 ORTHO05D008573 2.2e-67 259.6 202 62.9
SMO146G0237 Selaginella moellendorffii HOM05D006795 ORTHO05D008573 6.4e-67 258.1 216 54.6
CSS0028605 Camellia sinensis var. sinensis HOM05D006795 ORTHO05D008573 8.4e-67 257.7 227 57.3
Phvul.007G063300 Phaseolus vulgaris HOM05D006795 ORTHO05D008573 6.0e-65 251.5 142 81.7
Pp3c14_10540 Physcomitrium patens HOM05D006795 ORTHO05D008573 1.3e-62 243.8 192 58.9
CBR_g32001 Chara braunii HOM05D006795 ORTHO05D008573 2.9e-59 232.6 203 55.7
MCO02G265 Micromonas commoda HOM05D006795 ORTHO05D008573 1.2e-52 210.7 220 45.5
PGSC0003DMG400027380 Solanum tuberosum HOM05D006795 ORTHO05D008573 1.2e-49 200.7 136 66.9
Zm00001eb181460 Zea mays HOM05D006795 ORTHO05D008573 2.1e-38 163.3 88 77.3
MELO3C008527.2 Cucumis melo HOM05D006795 ORTHO05D008573 3.5e-33 146.0 89 66.3
SMO146G0045 Selaginella moellendorffii HOM05D006795 ORTHO05D008573 6.1e-17 92.0 195 33.8
PRCOL_00002330 Prasinoderma coloniale HOM05D006795 ORTHO05D008573 8.0e-09 65.1 62 43.5
GSVIVG01018488001 Vitis vinifera HOM05D006795 ORTHO05D008573 2.2e-06 57.0 33 66.7


User provided reference genes

Program Settings