Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0021165 Lotus japonicus HOM05D006497 ORTHO05D008263 4.3e-69 264.6 140 100.0
Glyma.10G214200 Glycine max HOM05D006497 ORTHO05D008263 1.4e-43 179.9 143 70.6
Glyma.20G177400 Glycine max HOM05D006497 ORTHO05D008263 1.8e-43 179.5 143 69.9
VMungo0720G1877 Vigna mungo HOM05D006497 ORTHO05D008263 2.4e-43 179.1 144 68.8
arahy.Tifrunner.gnm1.ann1.0Y6FKJ Arachis hypogaea HOM05D006497 ORTHO05D008263 5.2e-43 177.9 119 76.5
Phvul.007G091500 Phaseolus vulgaris HOM05D006497 ORTHO05D008263 6.9e-43 177.6 144 68.1
arahy.Tifrunner.gnm1.ann1.E0CW41 Arachis hypogaea HOM05D006497 ORTHO05D008263 1.3e-41 173.3 120 73.3
Psat6g186080 Pisum sativum HOM05D006497 ORTHO05D008263 1.1e-37 160.2 130 64.6
Medtr1g095920 Medicago truncatula HOM05D006497 ORTHO05D008263 7.3e-37 157.5 138 63.0
Ca_10596_v3 Cicer arietinum L. HOM05D006497 ORTHO05D008263 9.6e-37 157.1 106 71.7
TPR.G11934 Trifolium pratense HOM05D006497 ORTHO05D008263 2.1e-36 156.0 108 71.3
TPR.G1790 Trifolium pratense HOM05D006497 ORTHO05D008263 9.0e-35 150.6 98 73.5
Lalb_Chr06g0162131 Lupinus albus HOM05D006497 ORTHO05D008263 2.6e-34 149.1 99 70.7
GSVIVG01035327001 Vitis vinifera HOM05D006497 ORTHO05D008263 3.8e-33 145.2 141 56.0
arahy.Tifrunner.gnm1.ann1.2EH2S8 Arachis hypogaea HOM05D006497 ORTHO05D009640 5.4e-32 141.4 199 44.7
QL12p040844 Quercus lobata HOM05D006497 ORTHO05D008263 5.4e-32 141.4 130 57.7
Actinidia18207 Actinidia chinensis HOM05D006497 ORTHO05D008263 1.6e-31 139.8 141 53.9
Hma1.2p1_0049F.1_g028230 Hydrangea macrophylla HOM05D006497 ORTHO05D008263 2.7e-31 139.0 122 58.2
Cpa.g.sc27.217 Carica papaya HOM05D006497 ORTHO05D008263 3.5e-31 138.7 127 59.1
Cfa005390 Carpinus fangiana HOM05D006497 ORTHO05D008263 3.5e-31 138.7 121 61.2
COL.COLO4_21011 Corchorus olitorius HOM05D006497 ORTHO05D008263 3.5e-31 138.7 142 55.6
Haze_01965 Corylus avellana HOM05D006497 ORTHO05D008263 7.9e-31 137.5 126 57.9
Gorai.001G024500 Gossypium raimondii HOM05D006497 ORTHO05D008263 1.8e-30 136.3 142 53.5
PGR031G1870 Punica granatum HOM05D006497 ORTHO05D008263 1.8e-30 136.3 112 62.5
CSS0028638 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 2.3e-30 136.0 138 52.9
Gohir.A07G022176 Gossypium hirsutum HOM05D006497 ORTHO05D008263 3.0e-30 135.6 142 52.8
Thhalv10026449m.g Eutrema salsugineum HOM05D006497 ORTHO05D008263 3.9e-30 135.2 111 60.4
Atru.chr7.2042 Acer truncatum HOM05D006497 ORTHO05D008263 6.7e-30 134.4 104 62.5
Thecc.09G049300 Theobroma cacao HOM05D006497 ORTHO05D008263 6.7e-30 134.4 141 54.6
PSO210G2909 Papaver somniferum HOM05D006497 ORTHO05D008263 8.7e-30 134.0 110 61.8
Ciclev10009788m.g Citrus clementina HOM05D006497 ORTHO05D008263 1.1e-29 133.7 153 51.0
Rhsim05G0006000 Rhododendron simsii HOM05D006497 ORTHO05D008263 1.1e-29 133.7 123 54.5
Aqoxy6G00985 Aquilegia oxysepala HOM05D006497 ORTHO05D008263 1.5e-29 133.3 136 53.7
AUR62040211 Chenopodium quinoa HOM05D006497 ORTHO05D008263 1.5e-29 133.3 98 64.3
Duzib168G0301 Durio zibethinus HOM05D006497 ORTHO05D008263 1.5e-29 133.3 142 55.6
Peaxi162Scf00840g00427 Petunia axillaris HOM05D006497 ORTHO05D008263 1.5e-29 133.3 143 53.1
Prupe.1G443400 Prunus persica HOM05D006497 ORTHO05D008263 1.5e-29 133.3 113 62.8
Sc09g0009540 Simmondsia chinensis HOM05D006497 ORTHO05D008263 1.9e-29 132.9 142 52.8
Lsat_1_v5_gn_3_27161 Lactuca sativa HOM05D006497 ORTHO05D008263 2.5e-29 132.5 101 63.4
CSS0007660 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 3.3e-29 132.1 138 51.4
CSS0049899 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 3.3e-29 132.1 138 51.4
CiPaw.08G027800 Carya illinoinensis HOM05D006497 ORTHO05D008263 4.3e-29 131.7 131 54.2
CANSAT54G2618 Cannabis sativa HOM05D006497 ORTHO05D008263 7.4e-29 131.0 107 57.9
Eucgr.C00622 Eucalyptus grandis HOM05D006497 ORTHO05D008263 7.4e-29 131.0 152 51.3
PSO210G1815 Papaver somniferum HOM05D006497 ORTHO05D008263 7.4e-29 131.0 110 60.9
SalBow1G7152 Salvia bowleyana HOM05D006497 ORTHO05D008263 9.6e-29 130.6 97 61.9
Sp7g30690 Schrenkiella parvula HOM05D006497 ORTHO05D008263 9.6e-29 130.6 111 59.5
TAR636G3582 Trochodendron aralioides HOM05D006497 ORTHO05D008263 9.6e-29 130.6 98 65.3
DCAR_003057 Daucus carota HOM05D006497 ORTHO05D008263 1.3e-28 130.2 98 62.2
Migut.E01547 Erythranthe guttata HOM05D006497 ORTHO05D008263 1.3e-28 130.2 101 62.4
Potri.018G058200 Populus trichocarpa HOM05D006497 ORTHO05D008263 1.3e-28 130.2 147 51.7
MD08G1108800 Malus domestica HOM05D006497 ORTHO05D008263 1.6e-28 129.8 141 53.9
Nn8g39006 Nelumbo nucifera HOM05D006497 ORTHO05D008263 1.6e-28 129.8 101 62.4
Nitab4.5_0002021g0040 Nicotiana tabacum HOM05D006497 ORTHO05D008263 1.6e-28 129.8 143 53.8
ECA246G5018 Erigeron canadensis HOM05D006497 ORTHO05D008263 3.6e-28 128.6 112 55.4
Ah.10g034670 Amaranthus hybridus HOM05D006497 ORTHO05D008263 4.8e-28 128.3 107 57.9
Os03g0651000 Oryza sativa ssp. japonica HOM05D006497 ORTHO05D008263 4.8e-28 128.3 96 65.6
MELO3C003479.2 Cucumis melo HOM05D006497 ORTHO05D008263 6.2e-28 127.9 149 51.7
ClCG11G014990 Citrullus lanatus HOM05D006497 ORTHO05D008263 1.1e-27 127.1 147 53.7
Nn8g40951 Nelumbo nucifera HOM05D006497 ORTHO05D008263 1.1e-27 127.1 102 62.7
Nitab4.5_0000318g0100 Nicotiana tabacum HOM05D006497 ORTHO05D008263 1.1e-27 127.1 143 51.7
CsaV3_3G048400 Cucumis sativus L. HOM05D006497 ORTHO05D008263 1.4e-27 126.7 149 51.7
THA.LOC104803742 Tarenaya hassleriana HOM05D006497 ORTHO05D008263 1.4e-27 126.7 121 52.9
RcHm_v2.0_Chr6g0306821 Rosa chinensis HOM05D006497 ORTHO05D008263 1.8e-27 126.3 145 51.7
Sabra18G0054600 Salix brachista HOM05D006497 ORTHO05D008263 1.8e-27 126.3 121 54.5
AL7G18780 Arabidopsis lyrata HOM05D006497 ORTHO05D008263 2.4e-27 125.9 138 49.3
EL10Ac2g03958 Beta vulgaris HOM05D006497 ORTHO05D008263 2.4e-27 125.9 98 61.2
AUR62009213 Chenopodium quinoa HOM05D006497 ORTHO05D008263 3.1e-27 125.6 98 62.2
Sopen07g031330 Solanum pennellii HOM05D006497 ORTHO05D008263 4.0e-27 125.2 145 49.0
Sed0009640 Sechium edule HOM05D006497 ORTHO05D008263 5.3e-27 124.8 146 51.4
Cc08_g10030 Coffea canephora HOM05D006497 ORTHO05D008263 6.9e-27 124.4 103 56.3
BcaB03g12770 Brassica carinata HOM05D006497 ORTHO05D008263 9.0e-27 124.0 107 57.9
Carub.0007s0757 Capsella rubella HOM05D006497 ORTHO05D008263 9.0e-27 124.0 126 53.2
FAN15G0473 Fragaria x ananassa HOM05D006497 ORTHO05D008263 9.0e-27 124.0 98 62.2
AT4G32915 Arabidopsis thaliana HOM05D006497 ORTHO05D008263 1.2e-26 123.6 138 50.0
MSTRG.11681 Avicennia marina HOM05D006497 ORTHO05D008263 1.5e-26 123.2 98 61.2
FvH4_2g35131 Fragaria vesca HOM05D006497 ORTHO05D008263 2.0e-26 122.9 114 57.9
A08p17840 Brassica napus HOM05D006497 ORTHO05D008263 2.6e-26 122.5 107 57.9
C03p86910 Brassica napus HOM05D006497 ORTHO05D008263 2.6e-26 122.5 107 57.9
BolC3t20984H Brassica oleracea HOM05D006497 ORTHO05D008263 2.6e-26 122.5 107 57.9
CARHR240920 Cardamine hirsuta HOM05D006497 ORTHO05D008263 2.6e-26 122.5 139 51.1
Zm00001eb218450 Zea mays HOM05D006497 ORTHO05D008263 3.4e-26 122.1 96 59.4
Migut.A00169 Erythranthe guttata HOM05D006497 ORTHO05D008263 7.6e-26 120.9 95 56.8
Solyc07g063140.1 Solanum lycopersicum HOM05D006497 ORTHO05D008263 7.6e-26 120.9 145 47.6
BraA08t33734Z Brassica rapa HOM05D006497 ORTHO05D008263 9.9e-26 120.6 107 57.0
CDE10G0177 Ceratophyllum demersum HOM05D006497 ORTHO05D008263 9.9e-26 120.6 97 57.7
HPP92_013944 Vanilla planifolia HOM05D006497 ORTHO05D008263 9.9e-26 120.6 110 48.2
CDE10G1018 Ceratophyllum demersum HOM05D006497 ORTHO05D008263 1.3e-25 120.2 97 57.7
Sed0025405 Sechium edule HOM05D006497 ORTHO05D008263 2.2e-25 119.4 141 49.6
C07p59400 Brassica napus HOM05D006497 ORTHO05D008263 2.9e-25 119.0 107 57.0
BcaNung02143 Brassica carinata HOM05D006497 ORTHO05D008263 3.8e-25 118.6 107 57.9
PGSC0003DMG400012416 Solanum tuberosum HOM05D006497 ORTHO05D008263 3.8e-25 118.6 145 47.6
BolC7t46384H Brassica oleracea HOM05D006497 ORTHO05D008263 8.4e-25 117.5 107 56.1
SEGI_35319 Sequoiadendron giganteum HOM05D006497 ORTHO05D008263 8.4e-25 117.5 95 60.0
Oeu011793.1 Olea europaea HOM05D006497 ORTHO05D008263 1.1e-24 117.1 153 44.4
A03p61670 Brassica napus HOM05D006497 ORTHO05D008263 1.4e-24 116.7 107 56.1
BraA03t15206Z Brassica rapa HOM05D006497 ORTHO05D008263 1.4e-24 116.7 107 56.1
ATR0749G075 Amborella trichopoda HOM05D006497 ORTHO05D008263 4.2e-24 115.2 129 48.1
ATR0304G027 Amborella trichopoda HOM05D006497 ORTHO05D008263 9.3e-24 114.0 129 48.1
Aa31LG2G18050 Aethionema arabicum HOM05D006497 ORTHO05D008263 3.5e-23 112.1 107 56.1
CAN.G162.59 Capsicum annuum HOM05D006497 ORTHO05D008263 4.6e-23 111.7 98 55.1
unitig_32.g11478 Utricularia gibba HOM05D006497 ORTHO05D008263 1.8e-22 109.8 98 55.1
Hund19485 Selenicereus undatus HOM05D006497 ORTHO05D008263 2.5e-21 105.9 177 40.1
SGA_v2.0_scaffold163G38048 Striga asiatica HOM05D006497 ORTHO05D008263 2.1e-20 102.8 168 36.3
HanXRQChr17g0538891 Helianthus annuus HOM05D006497 ORTHO05D008263 1.7e-17 93.2 76 59.2
TWI32G0413 Tripterygium wilfordii HOM05D006497 ORTHO05D008263 1.7e-17 93.2 115 47.8
Mapoly0154s0030 Marchantia polymorpha HOM05D006497 ORTHO05D008263 2.9e-17 92.4 104 40.4
SGA_v2.0_scaffold169G38673 Striga asiatica HOM05D006497 ORTHO05D008263 1.9e-16 89.7 97 49.5
CBR_g31997 Chara braunii HOM05D006497 ORTHO05D008263 2.5e-16 89.4 106 43.4
Cre08.g364650 Chlamydomonas reinhardtii HOM05D001184 ORTHO05D007940 1.0e-14 84.0 97 42.3
Manes.03G057500 Manihot esculenta HOM05D006497 ORTHO05D008263 1.3e-14 83.6 91 51.6
vmacro08276 Vaccinium macrocarpon HOM05D006497 ORTHO05D008263 2.3e-14 82.8 61 62.3
FAN27G1249 Fragaria x ananassa HOM05D006497 ORTHO05D008263 3.0e-14 82.4 98 46.9
SMO146G0150 Selaginella moellendorffii HOM05D006497 ORTHO05D008263 3.9e-14 82.0 95 42.1
Pp3c2_33430 Physcomitrium patens HOM05D006497 ORTHO05D008263 1.5e-13 80.1 117 32.5
Dinv27945 Davidia involucrata HOM05D006497 ORTHO05D008263 2.8e-12 75.9 85 49.4
MBI13_g05466_MAGBIO Magnolia biondii HOM05D006497 ORTHO05D008263 3.7e-12 75.5 96 47.9
Gohir.D07G023800 Gossypium hirsutum HOM05D006497 ORTHO05D008263 5.3e-11 71.6 93 47.3
MCO07G547 Micromonas commoda HOM05D001184 ORTHO05D007940 1.6e-07 60.1 91 34.1
PRCOL_00005999 Prasinoderma coloniale HOM05D006497 ORTHO05D008263 6.7e-06 54.7 94 28.7


User provided reference genes

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