Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0021075 Lotus japonicus HOM05D005654 ORTHO05D006438 1.4e-90 336.3 176 100.0
Lj3g0016616 Lotus japonicus HOM05D005654 ORTHO05D006438 7.5e-79 297.4 179 88.3
Glyma.13G002400 Glycine max HOM05D005654 ORTHO05D006438 7.0e-69 264.2 179 79.3
VMungo0331G0515 Vigna mungo HOM05D005654 ORTHO05D006438 5.0e-67 258.1 173 80.3
Phvul.010G058900 Phaseolus vulgaris HOM05D005654 ORTHO05D006438 1.1e-66 256.9 173 80.3
Glyma.20G066700 Glycine max HOM05D005654 ORTHO05D006438 7.2e-66 254.2 179 77.7
Glyma.16G220800 Glycine max HOM05D005654 ORTHO05D006438 8.0e-65 250.8 175 78.3
Ca_14022_v3 Cicer arietinum L. HOM05D005654 ORTHO05D006438 1.5e-63 246.5 180 76.1
Lalb_Chr06g0172541 Lupinus albus HOM05D005654 ORTHO05D006438 3.1e-61 238.8 188 70.2
TPR.G24134 Trifolium pratense HOM05D005654 ORTHO05D006438 2.0e-60 236.1 173 76.9
QL06p034798 Quercus lobata HOM05D005654 ORTHO05D006438 2.5e-58 229.2 177 71.8
QL10p007390 Quercus lobata HOM05D005654 ORTHO05D006438 2.5e-58 229.2 177 71.8
Medtr8g077440 Medicago truncatula HOM05D005654 ORTHO05D006438 5.2e-56 221.5 181 71.8
GSVIVG01018856001 Vitis vinifera HOM05D005654 ORTHO05D006438 1.7e-54 216.5 186 67.7
Gohir.A11G179400 Gossypium hirsutum HOM05D005654 ORTHO05D006438 2.2e-54 216.1 183 69.9
CiPaw.08G137200 Carya illinoinensis HOM05D005654 ORTHO05D006438 8.3e-54 214.2 183 67.8
Thecc.01G026300 Theobroma cacao HOM05D005654 ORTHO05D006438 1.1e-53 213.8 182 66.5
CSS0048601 Camellia sinensis var. sinensis HOM05D005654 ORTHO05D006438 1.8e-53 213.0 179 67.6
Haze_03832 Corylus avellana HOM05D005654 ORTHO05D006438 1.8e-53 213.0 174 69.5
ClCG09G019610 Citrullus lanatus HOM05D005654 ORTHO05D006438 7.0e-53 211.1 184 68.5
arahy.Tifrunner.gnm1.ann1.IV76VY Arachis hypogaea HOM05D005654 ORTHO05D006438 1.2e-52 210.3 199 60.8
MELO3C005244.2 Cucumis melo HOM05D005654 ORTHO05D006438 2.0e-52 209.5 179 65.4
Gorai.007G199000 Gossypium raimondii HOM05D005654 ORTHO05D006438 2.0e-52 209.5 184 67.9
QL08p063081 Quercus lobata HOM05D005654 ORTHO05D006438 2.7e-52 209.1 182 64.8
CsaV3_5G027780 Cucumis sativus L. HOM05D005654 ORTHO05D006438 4.6e-52 208.4 179 64.8
CANSAT01G3286 Cannabis sativa HOM05D005654 ORTHO05D006438 7.8e-52 207.6 177 64.4
FAN07G1349 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.0e-51 207.2 182 63.7
Eucgr.H02778 Eucalyptus grandis HOM05D005654 ORTHO05D006438 1.3e-51 206.8 186 66.1
COL.COLO4_21992 Corchorus olitorius HOM05D005654 ORTHO05D006438 1.7e-51 206.5 182 65.9
Gohir.D11G187100 Gossypium hirsutum HOM05D005654 ORTHO05D006438 1.7e-51 206.5 184 67.4
RcHm_v2.0_Chr6g0277811 Rosa chinensis HOM05D005654 ORTHO05D006438 3.0e-51 205.7 182 63.7
FAN17G0825 Fragaria x ananassa HOM05D005654 ORTHO05D006438 3.9e-51 205.3 182 63.7
Sopen04g003980 Solanum pennellii HOM05D005654 ORTHO05D006438 3.9e-51 205.3 183 65.0
Prupe.8G013400 Prunus persica HOM05D005654 ORTHO05D006438 6.6e-51 204.5 182 64.8
TAR381G0206 Trochodendron aralioides HOM05D005654 ORTHO05D006438 8.6e-51 204.1 180 65.6
FvH4_2g15150 Fragaria vesca HOM05D005654 ORTHO05D006438 1.1e-50 203.8 182 62.6
Lj2A460T79 Lonicera japonica HOM05D005654 ORTHO05D006438 1.5e-50 203.4 178 68.5
THA.LOC104819191 Tarenaya hassleriana HOM05D005654 ORTHO05D006438 1.5e-50 203.4 185 64.3
TWI60G0108 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 1.5e-50 203.4 191 64.9
Solyc04g008800.3 Solanum lycopersicum HOM05D005654 ORTHO05D006438 1.9e-50 203.0 183 64.5
FAN22G0080 Fragaria x ananassa HOM05D005654 ORTHO05D006438 3.3e-50 202.2 182 62.6
PGSC0003DMG400025306 Solanum tuberosum HOM05D005654 ORTHO05D006438 3.3e-50 202.2 183 63.9
Hma1.2p1_1114F.1_g258780 Hydrangea macrophylla HOM05D005654 ORTHO05D006438 5.6e-50 201.4 182 65.9
Nitab4.5_0002707g0030 Nicotiana tabacum HOM05D005654 ORTHO05D006438 9.5e-50 200.7 184 64.7
Manes.02G099200 Manihot esculenta HOM05D005654 ORTHO05D006438 1.2e-49 200.3 191 62.3
Peaxi162Scf00329g00119 Petunia axillaris HOM05D005654 ORTHO05D006438 1.2e-49 200.3 183 62.3
Sed0005955 Sechium edule HOM05D005654 ORTHO05D006438 1.2e-49 200.3 176 62.5
MD05G1010700 Malus domestica HOM05D005654 ORTHO05D006438 1.6e-49 199.9 183 62.8
Nn1g05784 Nelumbo nucifera HOM05D005654 ORTHO05D006438 2.1e-49 199.5 179 63.7
CAN.G419.13 Capsicum annuum HOM05D005654 ORTHO05D006438 2.8e-49 199.1 189 63.0
MD10G1009400 Malus domestica HOM05D005654 ORTHO05D006438 6.2e-49 198.0 182 62.6
Nitab4.5_0007445g0010 Nicotiana tabacum HOM05D005654 ORTHO05D006438 1.4e-48 196.8 184 64.1
Cc07_g10180 Coffea canephora HOM05D005654 ORTHO05D006438 2.3e-48 196.1 189 60.8
MSTRG.23266 Avicennia marina HOM05D005654 ORTHO05D006438 5.2e-48 194.9 178 60.1
Migut.H02503 Erythranthe guttata HOM05D005654 ORTHO05D006438 6.8e-48 194.5 176 61.9
Actinidia26105 Actinidia chinensis HOM05D005654 ORTHO05D006438 1.2e-47 193.7 180 65.6
Sabra07G0015400 Salix brachista HOM05D005654 ORTHO05D006438 1.2e-47 193.7 189 61.4
FvH4_4g16440 Fragaria vesca HOM05D005654 ORTHO05D006438 1.5e-47 193.4 182 61.0
FAN12G4326 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.5e-47 193.4 182 61.0
Dinv33576 Davidia involucrata HOM05D005654 ORTHO05D006438 7.5e-47 191.0 177 62.7
arahy.Tifrunner.gnm1.ann1.I9PPQ0 Arachis hypogaea HOM05D005654 ORTHO05D006438 2.9e-46 189.1 184 60.3
Manes.01G140500 Manihot esculenta HOM05D005654 ORTHO05D006438 3.7e-46 188.7 188 60.1
A09p44110 Brassica napus HOM05D000363 ORTHO05D006438 2.4e-45 186.0 181 62.4
SalBow8G3171 Salvia bowleyana HOM05D005654 ORTHO05D006438 4.1e-45 185.3 177 61.0
PGR119G1083 Punica granatum HOM05D005654 ORTHO05D006438 5.4e-45 184.9 196 58.2
Dinv33575 Davidia involucrata HOM05D005654 ORTHO05D006438 1.2e-44 183.7 121 79.3
BraA09t39870Z Brassica rapa HOM05D005654 ORTHO05D006438 1.6e-44 183.3 182 61.0
Oeu035320.1 Olea europaea HOM05D005654 ORTHO05D006438 2.7e-44 182.6 130 73.1
C07p46090 Brassica napus HOM05D000363 ORTHO05D005000 1.0e-43 180.6 182 59.3
BolC7t45125H Brassica oleracea HOM05D000363 ORTHO05D005000 1.0e-43 180.6 182 59.3
AL5G31430 Arabidopsis lyrata HOM05D005654 ORTHO05D006438 2.3e-43 179.5 192 56.2
BcaC06g33063 Brassica carinata HOM05D005654 ORTHO05D006438 2.3e-43 179.5 179 58.7
Carub.0005s1741 Capsella rubella HOM05D005654 ORTHO05D006438 2.3e-43 179.5 190 57.4
AT3G51010 Arabidopsis thaliana HOM05D005654 ORTHO05D006438 3.0e-43 179.1 190 58.4
BraA03t13914Z Brassica rapa HOM05D000363 ORTHO05D005000 3.0e-43 179.1 177 59.9
Thhalv10010748m.g Eutrema salsugineum HOM05D005654 ORTHO05D006438 1.1e-42 177.2 189 57.7
Oeu021744.2 Olea europaea HOM05D005654 ORTHO05D006438 1.1e-42 177.2 230 49.1
PSO170G2173 Papaver somniferum HOM05D005654 ORTHO05D006438 1.1e-42 177.2 184 57.1
BcaC07g39579 Brassica carinata HOM05D005654 ORTHO05D006438 1.5e-42 176.8 182 58.8
C08p26310 Brassica napus HOM05D005654 ORTHO05D006438 1.5e-42 176.8 182 58.8
Lsat_1_v5_gn_9_115780 Lactuca sativa HOM05D005654 ORTHO05D006438 1.5e-42 176.8 188 55.9
Sc18g0007030 Simmondsia chinensis HOM05D005654 ORTHO05D006438 2.5e-42 176.0 182 59.3
PSO339G4156 Papaver somniferum HOM05D005654 ORTHO05D006438 3.3e-42 175.6 184 57.1
A03p48070 Brassica napus HOM05D000363 ORTHO05D005000 4.3e-42 175.3 177 58.8
BolC8t50249H Brassica oleracea HOM05D005654 ORTHO05D006438 4.3e-42 175.3 182 58.8
ECA248G0981 Erigeron canadensis HOM05D005654 ORTHO05D006438 5.6e-42 174.9 189 56.1
PSO528G0264 Papaver somniferum HOM05D005654 ORTHO05D006438 5.6e-42 174.9 184 56.0
Sp5g11200 Schrenkiella parvula HOM05D005654 ORTHO05D006438 7.3e-42 174.5 188 56.4
BcaNung00403 Brassica carinata HOM05D005654 ORTHO05D006438 2.1e-41 172.9 186 57.0
Psat0s439g0080 Pisum sativum HOM05D005654 ORTHO05D006438 6.2e-41 171.4 121 74.4
SGA_v2.0_scaffold9G04932 Striga asiatica HOM05D005654 ORTHO05D006438 8.1e-41 171.0 123 70.7
HanXRQChr10g0278901 Helianthus annuus HOM05D005654 ORTHO05D006438 3.1e-40 169.1 121 72.7
BcaB01g00554 Brassica carinata HOM05D005654 ORTHO05D006438 6.8e-40 167.9 186 54.8
Psat2g190960 Pisum sativum HOM05D005654 ORTHO05D006438 6.8e-40 167.9 120 74.2
Lj4A211T64 Lonicera japonica HOM05D005654 ORTHO05D006438 2.6e-39 166.0 194 56.7
Aa31LG4G19130 Aethionema arabicum HOM05D005654 ORTHO05D006438 3.4e-39 165.6 182 52.7
MBI01_g45163_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 5.8e-39 164.9 187 54.0
Aqoxy6G01210 Aquilegia oxysepala HOM05D005654 ORTHO05D006438 1.1e-37 160.6 178 55.6
Hund00373 Selenicereus undatus HOM05D005654 ORTHO05D006438 2.1e-36 156.4 194 50.5
FAN20G0529 Fragaria x ananassa HOM05D005654 ORTHO05D006438 8.6e-35 151.0 132 63.6
CDE04G0601 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 3.3e-34 149.1 183 50.3
CDE12G0226 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 4.3e-34 148.7 183 50.3
Ciclev10003765m.g Citrus clementina HOM05D005654 ORTHO05D006438 2.1e-33 146.4 128 62.5
HPP92_013005 Vanilla planifolia HOM05D005654 ORTHO05D006438 2.4e-32 142.9 123 57.7
Cfa006918 Carpinus fangiana HOM05D005654 ORTHO05D006438 2.6e-31 139.4 96 79.2
AUR62027117 Chenopodium quinoa HOM05D005654 ORTHO05D006438 2.9e-30 136.0 189 47.1
Sed0001903 Sechium edule HOM05D005654 ORTHO05D006438 3.8e-30 135.6 95 74.7
ATR0605G129 Amborella trichopoda HOM05D005654 ORTHO05D006438 1.9e-29 133.3 122 61.5
AUR62012893 Chenopodium quinoa HOM05D005654 ORTHO05D006438 7.1e-29 131.3 190 45.8
SGA_v2.0_scaffold280G46859 Striga asiatica HOM05D005654 ORTHO05D006438 2.1e-28 129.8 127 57.5
TWI09G1445 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 6.0e-28 128.3 89 79.8
Potri.007G018300 Populus trichocarpa HOM05D005654 ORTHO05D006438 1.7e-27 126.7 133 56.4
Zm00001eb265250 Zea mays HOM05D005654 ORTHO05D006438 1.7e-27 126.7 124 57.3
DCAR_025978 Daucus carota HOM05D005654 ORTHO05D006438 3.0e-27 125.9 183 49.2
Os05g0126200 Oryza sativa ssp. japonica HOM05D005654 ORTHO05D006438 3.9e-27 125.6 124 58.1
EL10Ac9g22080 Beta vulgaris HOM05D005654 ORTHO05D006438 1.9e-26 123.2 246 39.8
FAN24G1434 Fragaria x ananassa HOM05D005654 ORTHO05D006438 2.5e-26 122.9 160 46.2
Nn5g29728 Nelumbo nucifera HOM05D005654 ORTHO05D006438 2.5e-26 122.9 166 47.6
CARHR160580 Cardamine hirsuta HOM05D005654 ORTHO05D006438 4.3e-26 122.1 94 71.3
Cpa.g.sc217.22 Carica papaya HOM05D005654 ORTHO05D006438 5.6e-26 121.7 160 50.6
Rhsim08G0123600 Rhododendron simsii HOM05D005654 ORTHO05D006438 6.2e-25 118.2 184 48.9
Ah.08g209860 Amaranthus hybridus HOM05D005654 ORTHO05D006438 2.9e-22 109.4 137 48.9
Zm00001eb414250 Zea mays HOM05D005654 ORTHO05D006438 2.8e-17 92.8 96 54.2
Lalb_Chr02g0154671 Lupinus albus HOM05D005654 ORTHO05D006438 4.8e-17 92.0 87 57.5
SEGI_21166 Sequoiadendron giganteum HOM05D005654 ORTHO05D006438 1.1e-16 90.9 67 65.7
unitig_747.g21954 Utricularia gibba HOM05D005654 ORTHO05D006438 1.4e-16 90.5 59 69.5
SHI03481 Sapria himalayana HOM05D005654 ORTHO05D006438 2.9e-14 82.8 107 47.7
SHI05467 Sapria himalayana HOM05D005654 ORTHO05D006438 1.9e-13 80.1 66 65.2
Zm00001eb355020 Zea mays HOM05D005654 ORTHO05D006438 2.1e-12 76.6 126 41.3
FAN15G1271 Fragaria x ananassa HOM05D005654 ORTHO05D006438 2.7e-12 76.3 64 68.8
Zm00001eb035810 Zea mays HOM05D005654 ORTHO05D006438 8.7e-11 71.2 81 51.9
MBI01_g11791_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 1.5e-10 70.5 140 40.0
Zm00001eb078300 Zea mays HOM05D000349 ORTHO05D010734 2.1e-09 66.6 80 47.5
Zm00001eb309330 Zea mays HOM05D000349 ORTHO05D006438 2.1e-09 66.6 80 47.5
SHI06070 Sapria himalayana HOM05D005654 ORTHO05D006438 6.2e-09 65.1 77 49.4
SHI10625 Sapria himalayana HOM05D020241 ORTHO05D006438 2.4e-08 63.2 90 48.9
Zm00001eb093520 Zea mays HOM05D005654 ORTHO05D006438 3.4e-07 59.3 62 48.4
Mapoly0001s0539 Marchantia polymorpha HOM05D024399 ORTHO05D023494 4.5e-07 58.9 87 42.5
CARHR160590 Cardamine hirsuta HOM05D005654 ORTHO05D006438 3.8e-06 55.8 96 42.7


User provided reference genes

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