Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0020911 Lotus japonicus HOM05D007620 ORTHO05D009568 1.2e-67 261.9 186 100.0
Lalb_Chr06g0168291 Lupinus albus HOM05D007620 ORTHO05D009568 2.2e-37 161.4 153 56.9
Lalb_Chr21g0311191 Lupinus albus HOM05D007620 ORTHO05D009568 4.1e-36 157.1 150 57.3
Medtr1g080110 Medicago truncatula HOM05D007620 ORTHO05D009568 3.0e-31 141.0 150 64.7
Psat0s1841g0080 Pisum sativum HOM05D007620 ORTHO05D009568 1.5e-30 138.7 150 50.0
Phvul.008G151824 Phaseolus vulgaris HOM05D007620 ORTHO05D009568 4.4e-30 137.1 151 51.7
VMungo0720G2663 Vigna mungo HOM05D007620 ORTHO05D009568 3.7e-29 134.0 151 51.0
Glyma.10G166400 Glycine max HOM05D007620 ORTHO05D009568 4.8e-29 133.7 152 50.7
Glyma.20G222800 Glycine max HOM05D007620 ORTHO05D009568 1.2e-27 129.0 153 52.9
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.7e-26 125.2 153 47.1
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.7e-26 125.2 73 75.3
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.7e-26 125.2 73 75.3
FvH4_6g01920 Fragaria vesca HOM05D007620 ORTHO05D009568 2.9e-26 124.4 153 46.4
Psat0s1841g0040 Pisum sativum HOM05D007620 ORTHO05D009568 5.0e-26 123.6 142 47.2
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 8.5e-26 122.9 153 45.8
Potri.019G019300 Populus trichocarpa HOM05D007620 ORTHO05D009568 8.5e-26 122.9 71 78.9
Hma1.2p1_1512F.1_g287900 Hydrangea macrophylla HOM05D007620 ORTHO05D009568 1.1e-25 122.5 161 44.7
Nn1g02811 Nelumbo nucifera HOM05D007620 ORTHO05D009568 2.5e-25 121.3 73 75.3
Dinv24674 Davidia involucrata HOM05D007620 ORTHO05D009568 4.2e-25 120.6 73 75.3
GSVIVG01023503001 Vitis vinifera HOM05D007620 ORTHO05D009568 7.2e-25 119.8 159 46.5
Lsat_1_v5_gn_8_24880 Lactuca sativa HOM05D007620 ORTHO05D009568 9.4e-25 119.4 73 71.2
QL03p030456 Quercus lobata HOM05D007620 ORTHO05D009568 9.4e-25 119.4 73 74.0
TAR362G1297 Trochodendron aralioides HOM05D007620 ORTHO05D009568 9.4e-25 119.4 73 76.7
Lj1g0023548 Lotus japonicus HOM05D007620 ORTHO05D009568 1.6e-24 118.6 151 45.7
Potri.013G047000 Populus trichocarpa HOM05D007620 ORTHO05D009568 1.6e-24 118.6 70 78.6
CDE04G2606 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 2.1e-24 118.2 73 72.6
Psat6g139880 Pisum sativum HOM05D007620 ORTHO05D009568 2.1e-24 118.2 144 45.8
RcHm_v2.0_Chr3g0449651 Rosa chinensis HOM05D007620 ORTHO05D009568 2.1e-24 118.2 73 69.9
CsaV3_1G045110 Cucumis sativus L. HOM05D007620 ORTHO05D009568 2.7e-24 117.9 70 77.1
MD04G1230300 Malus domestica HOM05D007620 ORTHO05D009568 2.7e-24 117.9 73 71.2
Sabra13G0043000 Salix brachista HOM05D007620 ORTHO05D009568 3.6e-24 117.5 70 77.1
MELO3C010128.2 Cucumis melo HOM05D007620 ORTHO05D009568 4.7e-24 117.1 82 68.3
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 6.1e-24 116.7 71 74.6
Thecc.05G270800 Theobroma cacao HOM05D007620 ORTHO05D009568 6.1e-24 116.7 156 41.7
Cfa006355 Carpinus fangiana HOM05D007620 ORTHO05D009568 1.8e-23 115.2 151 44.4
ClCG03G009720 Citrullus lanatus HOM05D007620 ORTHO05D009568 1.8e-23 115.2 68 76.5
Haze_04424 Corylus avellana HOM05D007620 ORTHO05D009568 8.8e-23 112.8 152 44.1
Gohir.D11G257601 Gossypium hirsutum HOM05D007620 ORTHO05D009568 8.8e-23 112.8 71 66.2
Gorai.007G275900 Gossypium raimondii HOM05D007620 ORTHO05D009568 8.8e-23 112.8 71 66.2
Duzib177G1032 Durio zibethinus HOM05D007620 ORTHO05D009568 1.5e-22 112.1 71 64.8
Manes.08G053900 Manihot esculenta HOM05D007620 ORTHO05D009568 1.5e-22 112.1 70 70.0
PSO210G6557 Papaver somniferum HOM05D007620 ORTHO05D009568 1.5e-22 112.1 73 68.5
PGR004G2089 Punica granatum HOM05D007620 ORTHO05D009568 1.5e-22 112.1 109 76.1
TPR.G22332 Trifolium pratense HOM05D007620 ORTHO05D009568 2.0e-22 111.7 148 43.9
CSS0021218 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 5.7e-22 110.2 74 70.3
CSS0034254 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 5.7e-22 110.2 74 70.3
MD12G1247400 Malus domestica HOM05D007620 ORTHO05D009568 5.7e-22 110.2 73 67.1
CANSAT21G0311 Cannabis sativa HOM05D007620 ORTHO05D009568 1.7e-21 108.6 71 64.8
Aqoxy5G00210 Aquilegia oxysepala HOM05D007620 ORTHO05D009568 2.8e-21 107.8 73 65.8
CSS0013452 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 3.7e-21 107.5 69 72.5
Sed0010835 Sechium edule HOM05D007620 ORTHO05D009568 3.7e-21 107.5 69 69.6
Glyma.03G251200 Glycine max HOM05D007620 ORTHO05D009568 6.3e-21 106.7 66 71.2
Lj2C43T7 Lonicera japonica HOM05D007620 ORTHO05D009568 8.3e-21 106.3 74 64.9
EL10Ac4g09018 Beta vulgaris HOM05D007620 ORTHO05D009568 2.4e-20 104.8 70 67.1
Gohir.A11G247300 Gossypium hirsutum HOM05D007620 ORTHO05D009568 2.4e-20 104.8 63 71.4
Oeu026591.1 Olea europaea HOM05D007620 ORTHO05D009568 2.4e-20 104.8 105 47.6
COL.COLO4_15485 Corchorus olitorius HOM05D007620 ORTHO05D009568 5.4e-20 103.6 63 69.8
Eucgr.H04228 Eucalyptus grandis HOM05D007620 ORTHO05D009568 1.2e-19 102.4 72 63.9
Migut.F00879 Erythranthe guttata HOM05D007620 ORTHO05D009568 2.7e-19 101.3 70 62.9
ATR0736G141 Amborella trichopoda HOM05D007620 ORTHO05D009568 4.5e-19 100.5 70 64.3
THA.LOC104801727 Tarenaya hassleriana HOM05D007620 ORTHO05D009568 4.5e-19 100.5 70 64.3
AUR62004839 Chenopodium quinoa HOM05D007620 ORTHO05D009568 5.9e-19 100.1 82 54.9
Cc02_g08810 Coffea canephora HOM05D007620 ORTHO05D009568 7.7e-19 99.8 73 61.6
Solyc04g010060.2 Solanum lycopersicum HOM05D007620 ORTHO05D009568 1.7e-18 98.6 83 56.6
AUR62040929 Chenopodium quinoa HOM05D007620 ORTHO05D009568 2.9e-18 97.8 81 54.3
Sp3g03610 Schrenkiella parvula HOM05D007620 ORTHO05D009568 3.8e-18 97.4 76 60.5
AT3G04760 Arabidopsis thaliana HOM05D007620 ORTHO05D009568 6.6e-18 96.7 76 60.5
PGR004G1481 Punica granatum HOM05D007620 ORTHO05D009568 6.6e-18 96.7 69 65.2
AL3G14890 Arabidopsis lyrata HOM05D007620 ORTHO05D009568 8.6e-18 96.3 76 59.2
Peaxi162Scf00528g00227 Petunia axillaris HOM05D007620 ORTHO05D009568 8.6e-18 96.3 73 60.3
MD12G1247200 Malus domestica HOM05D007620 ORTHO05D009568 1.1e-17 95.9 59 72.9
Ah.06g191910 Amaranthus hybridus HOM05D007620 ORTHO05D009568 1.5e-17 95.5 84 52.4
Aa31LG5G15170 Aethionema arabicum HOM05D007620 ORTHO05D009568 1.9e-17 95.1 151 41.1
Carub.0003s0393 Capsella rubella HOM05D007620 ORTHO05D009568 1.9e-17 95.1 77 58.4
CARHR079010 Cardamine hirsuta HOM05D007620 ORTHO05D009568 2.5e-17 94.7 72 62.5
A05p42800 Brassica napus HOM05D007620 ORTHO05D009568 3.3e-17 94.4 72 59.7
BraA05t22972Z Brassica rapa HOM05D007620 ORTHO05D009568 3.3e-17 94.4 72 59.7
C05p62520 Brassica napus HOM05D007620 ORTHO05D009568 5.5e-17 93.6 68 61.8
BolC5t34907H Brassica oleracea HOM05D007620 ORTHO05D009568 5.5e-17 93.6 68 63.2
PGSC0003DMG400011475 Solanum tuberosum HOM05D007620 ORTHO05D009568 5.5e-17 93.6 70 61.4
Ca_09448_v3 Cicer arietinum L. HOM05D007620 ORTHO05D009568 1.2e-16 92.4 189 36.0
Ciclev10019446m.g Citrus clementina HOM05D007620 ORTHO05D009568 3.6e-16 90.9 71 54.9
Atru.chr2.986 Acer truncatum HOM05D007620 ORTHO05D009568 8.0e-16 89.7 72 56.9
Sc09g0004220 Simmondsia chinensis HOM05D007620 ORTHO05D009568 1.8e-15 88.6 70 57.1
CAN.G358.141 Capsicum annuum HOM05D007620 ORTHO05D009568 5.2e-15 87.0 88 52.3
Lj2C43T8 Lonicera japonica HOM05D007620 ORTHO05D009568 5.2e-15 87.0 69 58.0
COL.COLO4_15482 Corchorus olitorius HOM05D007620 ORTHO05D009568 1.7e-13 82.0 52 73.1
Prupe.6G350200 Prunus persica HOM05D007620 ORTHO05D009568 1.7e-13 82.0 51 70.6
SGA_v2.0_scaffold13G06478 Striga asiatica HOM05D007620 ORTHO05D009568 8.3e-13 79.7 63 58.7
HPP92_005407 Vanilla planifolia HOM05D007620 ORTHO05D009568 2.0e-11 75.1 84 41.7
CSS0031974 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 1.7e-10 72.0 73 50.7
ECA233G5729 Erigeron canadensis HOM05D007620 ORTHO05D009568 5.0e-10 70.5 41 73.2
SalBow6G2000 Salvia bowleyana HOM05D007620 ORTHO05D009568 3.3e-09 67.8 76 47.4
Glyma.19G248500 Glycine max HOM05D007620 ORTHO05D009568 1.2e-08 65.9 51 64.7


User provided reference genes

Program Settings