Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0020791 Lotus japonicus HOM05D005610 ORTHO05D006181 1.5e-80 302.8 153 100.0
Lj4g0017663 Lotus japonicus HOM05D005610 ORTHO05D006181 2.3e-60 235.7 116 100.0
arahy.Tifrunner.gnm1.ann1.PD4MQY Arachis hypogaea HOM05D005610 ORTHO05D006181 2.2e-58 229.2 120 93.3
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 6.3e-58 227.6 120 92.5
Glyma.19G169600 Glycine max HOM05D005610 ORTHO05D006181 6.3e-58 227.6 116 95.7
Phvul.004G117800 Phaseolus vulgaris HOM05D005610 ORTHO05D006181 3.1e-57 225.3 116 94.0
Glyma.03G168300 Glycine max HOM05D005610 ORTHO05D006181 7.0e-57 224.2 116 93.1
Ca_13393_v3 Cicer arietinum L. HOM05D005610 ORTHO05D006181 1.1e-54 216.9 114 91.2
Medtr1g023330 Medicago truncatula HOM05D005610 ORTHO05D006181 3.2e-54 215.3 116 89.7
VMungo0464G1641 Vigna mungo HOM05D005610 ORTHO05D006181 8.0e-53 210.7 140 77.9
Medtr8g106470 Medicago truncatula HOM05D005610 ORTHO05D006181 1.0e-52 210.3 116 88.8
Lalb_Chr04g0257231 Lupinus albus HOM05D005610 ORTHO05D006181 8.8e-52 207.2 113 87.6
Lj6g0026774 Lotus japonicus HOM05D005610 ORTHO05D006181 8.3e-50 200.7 116 82.8
Prupe.8G115200 Prunus persica HOM05D005610 ORTHO05D006181 1.1e-49 200.3 116 82.8
QL10p003579 Quercus lobata HOM05D005610 ORTHO05D006181 2.4e-49 199.1 115 80.9
Cpa.g.sc152.66 Carica papaya HOM05D005610 ORTHO05D006181 5.4e-49 198.0 116 79.3
MD10G1088300 Malus domestica HOM05D005610 ORTHO05D006181 5.4e-49 198.0 116 82.8
Prupe.8G114900 Prunus persica HOM05D005610 ORTHO05D006181 9.1e-49 197.2 116 81.9
Haze_06904 Corylus avellana HOM05D005610 ORTHO05D006181 1.6e-48 196.4 130 72.3
RcHm_v2.0_Chr6g0259461 Rosa chinensis HOM05D005610 ORTHO05D006181 1.6e-48 196.4 123 77.2
Ciclev10017234m.g Citrus clementina HOM05D005610 ORTHO05D006181 7.7e-48 194.1 110 81.8
CiPaw.10G076800 Carya illinoinensis HOM05D005610 ORTHO05D006181 1.7e-47 193.0 116 78.4
FvH4_2g07070 Fragaria vesca HOM05D005610 ORTHO05D006181 1.7e-47 193.0 130 72.3
PGR142G4331 Punica granatum HOM05D005610 ORTHO05D006181 2.2e-47 192.6 116 80.2
Duzib235G0930 Durio zibethinus HOM05D005610 ORTHO05D006181 2.9e-47 192.2 116 78.4
Gohir.A06G152700 Gossypium hirsutum HOM05D005610 ORTHO05D006181 3.8e-47 191.8 116 77.6
COL.COLO4_31865 Corchorus olitorius HOM05D005610 ORTHO05D006181 5.0e-47 191.4 115 78.3
FAN15G0825 Fragaria x ananassa HOM05D005610 ORTHO05D006181 5.0e-47 191.4 116 79.3
Dinv13959 Davidia involucrata HOM05D005610 ORTHO05D006181 1.1e-46 190.3 116 78.4
Atru.chr1.2482 Acer truncatum HOM05D005610 ORTHO05D006181 1.5e-46 189.9 112 78.6
Nitab4.5_0001867g0090 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.9e-46 189.5 115 76.5
Oeu054255.1 Olea europaea HOM05D005610 ORTHO05D006181 1.9e-46 189.5 116 78.4
ClCG07G002910 Citrullus lanatus HOM05D005610 ORTHO05D006181 2.5e-46 189.1 112 78.6
Gorai.010G185800 Gossypium raimondii HOM05D005610 ORTHO05D006181 3.2e-46 188.7 116 77.6
Thecc.06G231600 Theobroma cacao HOM05D005610 ORTHO05D006181 3.2e-46 188.7 111 80.2
Thecc.10G134700 Theobroma cacao HOM05D005610 ORTHO05D006181 5.5e-46 188.0 111 78.4
Duzib160G0112 Durio zibethinus HOM05D005610 ORTHO05D006181 1.2e-45 186.8 116 75.0
Nitab4.5_0008006g0060 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.2e-45 186.8 140 66.4
SalBow8G2682 Salvia bowleyana HOM05D005610 ORTHO05D006181 1.2e-45 186.8 114 76.3
Cc00_g15270 Coffea canephora HOM05D005610 ORTHO05D006181 1.6e-45 186.4 116 77.6
Sopen04g006810 Solanum pennellii HOM05D005610 ORTHO05D006181 1.6e-45 186.4 137 69.3
PGSC0003DMG400023560 Solanum tuberosum HOM05D005610 ORTHO05D006181 1.6e-45 186.4 114 77.2
Thecc.10G135500 Theobroma cacao HOM05D005610 ORTHO05D006181 1.6e-45 186.4 111 77.5
Peaxi162Scf00442g00523 Petunia axillaris HOM05D005610 ORTHO05D006181 2.1e-45 186.0 114 77.2
Solyc04g014700.4 Solanum lycopersicum HOM05D005610 ORTHO05D006181 2.1e-45 186.0 114 76.3
GSVIVG01008189001 Vitis vinifera HOM05D005610 ORTHO05D006181 2.1e-45 186.0 116 77.6
Nitab4.5_0001701g0220 Nicotiana tabacum HOM05D005610 ORTHO05D006181 2.7e-45 185.7 114 76.3
TWI38G1154 Tripterygium wilfordii HOM05D005610 ORTHO05D006181 2.7e-45 185.7 113 77.9
ClCG01G011300 Citrullus lanatus HOM05D005610 ORTHO05D006181 3.6e-45 185.3 111 78.4
MELO3C008876.2 Cucumis melo HOM05D005610 ORTHO05D006181 3.6e-45 185.3 111 77.5
CAN.G1263.12 Capsicum annuum HOM05D005610 ORTHO05D006181 4.7e-45 184.9 114 76.3
CsaV3_4G031690 Cucumis sativus L. HOM05D005610 ORTHO05D006181 6.1e-45 184.5 115 73.9
Sed0027170 Sechium edule HOM05D005610 ORTHO05D006181 6.1e-45 184.5 112 75.9
TAR624G0514 Trochodendron aralioides HOM05D005610 ORTHO05D006181 8.0e-45 184.1 119 73.9
CANSAT01G2220 Cannabis sativa HOM05D005610 ORTHO05D006181 1.0e-44 183.7 114 75.4
Nitab4.5_0018980g0020 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.0e-44 183.7 114 75.4
PSO210G2880 Papaver somniferum HOM05D005610 ORTHO05D006181 1.4e-44 183.3 117 74.4
Actinidia26870 Actinidia chinensis HOM05D005610 ORTHO05D006181 1.8e-44 183.0 112 75.9
BcaC09g47662 Brassica carinata HOM05D005610 ORTHO05D006181 1.8e-44 183.0 111 75.7
CSS0047184 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 4.0e-44 181.8 116 75.9
Carub.0003s0067 Capsella rubella HOM05D005610 ORTHO05D006181 4.0e-44 181.8 111 75.7
CARHR075530 Cardamine hirsuta HOM05D005610 ORTHO05D006181 4.0e-44 181.8 111 76.6
BNapus_Darmor_BZH_scaffold_133p00040 Brassica napus HOM05D005610 ORTHO05D006181 5.2e-44 181.4 111 74.8
BraA01t04664Z Brassica rapa HOM05D005610 ORTHO05D006181 5.2e-44 181.4 111 74.8
Oeu052223.1 Olea europaea HOM05D005610 ORTHO05D006181 6.8e-44 181.0 116 74.1
SGA_v2.0_scaffold4G01884 Striga asiatica HOM05D005610 ORTHO05D006181 6.8e-44 181.0 116 74.1
SGA_v2.0_scaffold7G03768 Striga asiatica HOM05D005610 ORTHO05D006181 6.8e-44 181.0 111 74.8
ECA238G1057 Erigeron canadensis HOM05D005610 ORTHO05D006181 8.8e-44 180.6 112 75.0
Manes.16G001300 Manihot esculenta HOM05D005610 ORTHO05D006181 8.8e-44 180.6 117 74.4
AT3G01435 Arabidopsis thaliana HOM05D005610 ORTHO05D006181 1.2e-43 180.3 111 74.8
AL3G10740 Arabidopsis lyrata HOM05D005610 ORTHO05D006181 1.5e-43 179.9 111 74.8
EL10Ac4g08756 Beta vulgaris HOM05D005610 ORTHO05D006181 2.6e-43 179.1 114 73.7
Cc09_g00980 Coffea canephora HOM05D005610 ORTHO05D006181 2.6e-43 179.1 116 74.1
Thhalv10022365m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 2.6e-43 179.1 146 62.3
THA.LOC104822382 Tarenaya hassleriana HOM05D005610 ORTHO05D006181 2.6e-43 179.1 111 74.8
Migut.H01600 Erythranthe guttata HOM05D005610 ORTHO05D006181 4.4e-43 178.3 111 74.8
Eucgr.B02596 Eucalyptus grandis HOM05D005610 ORTHO05D006181 5.7e-43 177.9 112 74.1
PSO302G0046 Papaver somniferum HOM05D005610 ORTHO05D006181 5.7e-43 177.9 118 71.2
Sp3g00630 Schrenkiella parvula HOM05D005610 ORTHO05D006181 5.7e-43 177.9 111 72.1
Aa31LG5G10530 Aethionema arabicum HOM05D005610 ORTHO05D006181 1.7e-42 176.4 111 73.0
Hund25163 Selenicereus undatus HOM05D005610 ORTHO05D006181 2.8e-42 175.6 112 71.4
A05p44570 Brassica napus HOM05D005610 ORTHO05D006181 3.7e-42 175.3 111 72.1
BraA05t23199Z Brassica rapa HOM05D005610 ORTHO05D006181 3.7e-42 175.3 111 72.1
vmacro03652 Vaccinium macrocarpon HOM05D005610 ORTHO05D006181 4.9e-42 174.9 114 71.1
MSTRG.13119 Avicennia marina HOM05D005610 ORTHO05D006181 6.3e-42 174.5 111 73.9
CDE04G2721 Ceratophyllum demersum HOM05D005610 ORTHO05D006181 6.3e-42 174.5 119 68.9
AUR62034142 Chenopodium quinoa HOM05D005610 ORTHO05D006181 6.3e-42 174.5 109 73.4
AUR62014294 Chenopodium quinoa HOM05D005610 ORTHO05D006181 1.1e-41 173.7 114 70.2
Aqoxy4G02780 Aquilegia oxysepala HOM05D005610 ORTHO05D006181 4.1e-41 171.8 111 71.2
HanXRQChr05g0129341 Helianthus annuus HOM05D005610 ORTHO05D006181 2.0e-40 169.5 119 66.4
BolC1t05956H Brassica oleracea HOM05D005610 ORTHO05D006181 2.7e-40 169.1 132 62.9
Nn8g38603 Nelumbo nucifera HOM05D005610 ORTHO05D006181 3.5e-40 168.7 117 67.5
Thhalv10022907m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 2.3e-39 166.0 126 62.7
BolC5t35148H Brassica oleracea HOM05D005610 ORTHO05D006181 2.9e-39 165.6 111 68.5
Sabra04G0000600 Salix brachista HOM05D005610 ORTHO05D006181 3.8e-39 165.2 115 68.7
C09p75160 Brassica napus HOM05D005610 ORTHO05D006181 3.3e-38 162.2 111 67.6
Potri.004G001600 Populus trichocarpa HOM05D005610 ORTHO05D006181 4.3e-38 161.8 115 67.0
unitig_748.g7924 Utricularia gibba HOM05D000772 ORTHO05D006181 4.7e-37 158.3 110 65.5
Psat6g005240 Pisum sativum HOM05D005610 ORTHO05D006181 1.4e-36 156.8 84 91.7
Lsat_1_v5_gn_7_13401 Lactuca sativa HOM05D005610 ORTHO05D006181 1.5e-35 153.3 102 68.6
Zm00001eb234830 Zea mays HOM05D005610 ORTHO05D006181 2.0e-35 152.9 109 65.1
HPP92_003728 Vanilla planifolia HOM05D005610 ORTHO05D006181 2.6e-35 152.5 109 63.3
ATR1153G018 Amborella trichopoda HOM05D005610 ORTHO05D006181 9.8e-35 150.6 106 66.0
Ah.06g187910 Amaranthus hybridus HOM05D005610 ORTHO05D006181 4.9e-34 148.3 101 67.3
ATR0723G088 Amborella trichopoda HOM05D005610 ORTHO05D006181 1.8e-33 146.4 106 65.1
Gohir.D06G159100 Gossypium hirsutum HOM05D005610 ORTHO05D006181 3.2e-33 145.6 86 76.7
Os02g0189100 Oryza sativa ssp. japonica HOM05D005610 ORTHO05D006181 9.2e-33 144.1 110 60.9
FAN24G2055 Fragaria x ananassa HOM05D005610 ORTHO05D006181 7.8e-32 141.0 86 74.4
Zm00001eb206370 Zea mays HOM05D005610 ORTHO05D006181 1.0e-31 140.6 101 66.3
CSS0025052 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 3.3e-30 135.6 86 73.3
MBI19_g29445_MAGBIO Magnolia biondii HOM05D005610 ORTHO05D006181 9.5e-30 134.0 134 53.0
Mapoly0014s0199 Marchantia polymorpha HOM05D005610 ORTHO05D006181 3.6e-29 132.1 110 58.2
TAR626G0207 Trochodendron aralioides HOM05D005610 ORTHO05D006181 4.7e-29 131.7 182 42.3
SEGI_23772 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 1.8e-28 129.8 107 60.7
Pp3c10_18150 Physcomitrium patens HOM05D005610 ORTHO05D006181 5.2e-28 128.3 111 55.0
Dinv29757 Davidia involucrata HOM05D005610 ORTHO05D006181 1.5e-27 126.7 73 83.6
HanXRQChr15g0470051 Helianthus annuus HOM05D005610 ORTHO05D006181 1.4e-25 120.2 88 64.8
FAN27G3428 Fragaria x ananassa HOM05D005610 ORTHO05D006181 5.4e-25 118.2 66 83.3
BNapus_Darmor_BZH_scaffold_119p00050 Brassica napus HOM05D005610 ORTHO05D006181 7.0e-25 117.9 75 74.7
BNapus_Darmor_BZH_scaffold_97p00380 Brassica napus HOM05D005610 ORTHO05D006181 7.0e-25 117.9 75 74.7
Thecc.10G135300 Theobroma cacao HOM05D005610 ORTHO05D006181 1.3e-23 113.6 70 77.1
TPR.G7342 Trifolium pratense HOM05D005610 ORTHO05D006181 1.3e-23 113.6 56 94.6
SMO200G0153 Selaginella moellendorffii HOM05D005610 ORTHO05D006181 1.7e-23 113.2 111 46.8
Actinidia02323 Actinidia chinensis HOM05D005610 ORTHO05D006181 2.3e-23 112.8 67 76.1
CBR_g27782 Chara braunii HOM05D005610 ORTHO05D001468 3.3e-22 109.0 120 47.5
Eucgr.K02585 Eucalyptus grandis HOM05D005610 ORTHO05D006181 7.3e-22 107.8 70 75.7
FAN20G1916 Fragaria x ananassa HOM05D005610 ORTHO05D006181 4.7e-21 105.1 59 81.4
Zm00001eb004040 Zea mays HOM05D005610 ORTHO05D006181 6.2e-21 104.8 74 62.2
AagrBONN_evm.TU.Sc2ySwM_228.3334 Anthoceros agrestis HOM05D005610 ORTHO05D006181 3.1e-20 102.4 137 38.0
Pp3c3_34050 Physcomitrium patens HOM05D005610 ORTHO05D006181 3.4e-19 99.0 82 59.8
Rhsim13G0147700 Rhododendron simsii HOM05D005610 ORTHO05D006181 1.9e-17 93.2 61 73.8
Sc16g0007910 Simmondsia chinensis HOM05D005610 ORTHO05D006181 2.3e-15 86.3 54 75.9
RcHm_v2.0_Chr7g0240711 Rosa chinensis HOM05D005610 ORTHO05D006181 4.7e-13 78.6 52 71.2
RcHm_v2.0_Chr7g0240721 Rosa chinensis HOM05D005610 ORTHO05D006181 3.4e-11 72.4 48 72.9
Migut.M01383 Erythranthe guttata HOM05D005610 ORTHO05D006181 3.0e-07 59.3 58 48.3
SEGI_27415 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 5.1e-07 58.5 60 48.3
CiPaw.09G101200 Carya illinoinensis HOM05D005610 ORTHO05D006181 3.3e-06 55.8 48 56.2


User provided reference genes

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