Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0020623 Lotus japonicus HOM05D006153 ORTHO05D007701 5.4e-56 220.7 107 100.0
Lj5g0024415 Lotus japonicus HOM05D006153 ORTHO05D007701 5.8e-50 200.7 108 94.4
VMungo0720G0345 Vigna mungo HOM05D006153 ORTHO05D007701 3.6e-28 128.3 107 65.4
Lalb_Chr06g0165291 Lupinus albus HOM05D006153 ORTHO05D007701 1.5e-26 122.9 104 58.7
Phvul.007G043000 Phaseolus vulgaris HOM05D006153 ORTHO05D007701 2.0e-26 122.5 99 69.7
Glyma.20G131700 Glycine max HOM05D006153 ORTHO05D007701 7.6e-26 120.6 99 66.7
Lalb_Chr02g0145121 Lupinus albus HOM05D006153 ORTHO05D007701 1.9e-24 115.9 109 56.0
arahy.Tifrunner.gnm1.ann1.EHR7LK Arachis hypogaea HOM05D006153 ORTHO05D007701 3.2e-24 115.2 103 63.1
Glyma.10G259200 Glycine max HOM05D006153 ORTHO05D007701 2.1e-23 112.5 102 63.7
Manes.07G064400 Manihot esculenta HOM05D006153 ORTHO05D007701 1.6e-20 102.8 103 54.4
Dinv42217 Davidia involucrata HOM05D006153 ORTHO05D007701 6.9e-19 97.4 99 52.5
Haze_10254 Corylus avellana HOM05D006153 ORTHO05D007701 9.0e-19 97.1 102 49.0
Cpa.g.sc200.7 Carica papaya HOM05D006153 ORTHO05D007701 4.5e-18 94.7 99 48.5
GSVIVG01037871001 Vitis vinifera HOM05D006153 ORTHO05D007701 1.3e-17 93.2 99 47.5
GSVIVG01037872001 Vitis vinifera HOM05D006153 ORTHO05D007701 2.2e-17 92.4 99 46.5
GSVIVG01037873001 Vitis vinifera HOM05D006153 ORTHO05D007701 2.9e-17 92.0 106 46.2
Duzib132G0541 Durio zibethinus HOM05D006153 ORTHO05D007701 3.8e-17 91.7 99 46.5
Hma1.2p1_1174F.1_g263880 Hydrangea macrophylla HOM05D006153 ORTHO05D007701 1.1e-16 90.1 100 48.0
Manes.10G074900 Manihot esculenta HOM05D006153 ORTHO05D007701 3.2e-16 88.6 100 52.0
Sabra16G0186000 Salix brachista HOM05D006153 ORTHO05D007701 9.3e-16 87.0 100 49.0
Actinidia34374 Actinidia chinensis HOM05D006153 ORTHO05D007701 1.2e-15 86.7 99 45.5
FvH4_2g04480 Fragaria vesca HOM05D006153 ORTHO05D007701 1.6e-15 86.3 104 50.0
FAN24G1230 Fragaria x ananassa HOM05D006153 ORTHO05D007701 1.6e-15 86.3 104 50.0
FAN20G1027 Fragaria x ananassa HOM05D006153 ORTHO05D007701 2.7e-15 85.5 104 49.0
Gohir.D13G044400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 3.5e-15 85.1 99 43.4
Gorai.013G049200 Gossypium raimondii HOM05D006153 ORTHO05D007701 3.5e-15 85.1 99 43.4
Gorai.002G009800 Gossypium raimondii HOM05D006153 ORTHO05D007701 4.6e-15 84.7 100 45.0
CiPaw.05G015200 Carya illinoinensis HOM05D006153 ORTHO05D007701 6.0e-15 84.3 96 46.9
Gohir.A01G008400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 7.9e-15 84.0 100 45.0
QL11p029270 Quercus lobata HOM05D006153 ORTHO05D007701 1.0e-14 83.6 100 46.0
CSS0010428 Camellia sinensis var. sinensis HOM05D006153 ORTHO05D007701 1.3e-14 83.2 99 42.4
FAN27G0726 Fragaria x ananassa HOM05D006153 ORTHO05D007701 1.3e-14 83.2 104 47.1
PGR042G3678 Punica granatum HOM05D006153 ORTHO05D007701 1.3e-14 83.2 100 42.0
RcHm_v2.0_Chr6g0253971 Rosa chinensis HOM05D006153 ORTHO05D007701 1.3e-14 83.2 104 48.1
Dinv15786 Davidia involucrata HOM05D006153 ORTHO05D007701 1.8e-14 82.8 104 44.2
Lj1g0020403 Lotus japonicus HOM05D006153 ORTHO05D007701 3.9e-14 81.6 99 45.5
Nitab4.5_0002017g0030 Nicotiana tabacum HOM05D006153 ORTHO05D007701 5.1e-14 81.3 49 63.3
Prupe.8G140400 Prunus persica HOM05D006153 ORTHO05D007701 5.1e-14 81.3 100 44.0
Potri.001G296900 Populus trichocarpa HOM05D006153 ORTHO05D007701 6.7e-14 80.9 99 44.4
QL11p031990 Quercus lobata HOM05D006153 ORTHO05D007701 6.7e-14 80.9 68 52.9
FAN15G1936 Fragaria x ananassa HOM05D006153 ORTHO05D007701 8.7e-14 80.5 104 48.1
MD05G1096000 Malus domestica HOM05D006153 ORTHO05D007701 8.7e-14 80.5 114 42.1
Nitab4.5_0012681g0010 Nicotiana tabacum HOM05D006153 ORTHO05D007701 8.7e-14 80.5 49 63.3
Cfa004655 Carpinus fangiana HOM05D006153 ORTHO05D007701 1.1e-13 80.1 86 50.0
MD10G1102200 Malus domestica HOM05D006153 ORTHO05D007701 1.1e-13 80.1 112 40.2
TWI23G0900 Tripterygium wilfordii HOM05D006153 ORTHO05D007701 1.1e-13 80.1 100 42.0
Duzib052G0610 Durio zibethinus HOM05D006153 ORTHO05D007701 1.9e-13 79.3 101 41.6
HanXRQChr16g0514451 Helianthus annuus HOM05D006153 ORTHO05D007701 3.3e-13 78.6 109 41.3
HanXRQChr16g0514461 Helianthus annuus HOM05D006153 ORTHO05D007701 3.3e-13 78.6 112 42.0
Thecc.02G113400 Theobroma cacao HOM05D006153 ORTHO05D007701 3.3e-13 78.6 99 43.4
AT3G19550 Arabidopsis thaliana HOM05D006153 ORTHO05D007701 4.3e-13 78.2 102 44.1
BcaB06g26014 Brassica carinata HOM05D006153 ORTHO05D007701 5.6e-13 77.8 107 42.1
Cfa004694 Carpinus fangiana HOM05D006153 ORTHO05D007701 5.6e-13 77.8 101 40.6
COL.COLO4_32545 Corchorus olitorius HOM05D006153 ORTHO05D007701 5.6e-13 77.8 101 41.6
HanXRQChr16g0514921 Helianthus annuus HOM05D006153 ORTHO05D007701 7.4e-13 77.4 107 42.1
Peaxi162Scf00152g00320 Petunia axillaris HOM05D006153 ORTHO05D007701 7.4e-13 77.4 51 54.9
HanXRQChr16g0514901 Helianthus annuus HOM05D006153 ORTHO05D007701 9.6e-13 77.0 107 40.2
PSO541G5112 Papaver somniferum HOM05D006153 ORTHO05D007701 9.6e-13 77.0 41 73.2
Sed0025917 Sechium edule HOM05D006153 ORTHO05D007701 1.3e-12 76.6 45 66.7
TAR381G0917 Trochodendron aralioides HOM05D006153 ORTHO05D007701 1.3e-12 76.6 99 44.4
ATR0030G019 Amborella trichopoda HOM05D006153 ORTHO05D007701 1.6e-12 76.3 62 54.8
Oeu013772.1 Olea europaea HOM05D006153 ORTHO05D007701 1.6e-12 76.3 67 43.3
Peaxi162Scf00003g00261 Petunia axillaris HOM05D006153 ORTHO05D007701 1.6e-12 76.3 84 42.9
BcaC05g28465 Brassica carinata HOM05D006153 ORTHO05D007701 2.8e-12 75.5 107 41.1
Ca_24350_v3 Cicer arietinum L. HOM05D006153 ORTHO05D007701 2.8e-12 75.5 99 45.5
Actinidia27982 Actinidia chinensis HOM05D006153 ORTHO05D007701 3.7e-12 75.1 93 46.2
BcaB04g20696 Brassica carinata HOM05D006153 ORTHO05D007701 3.7e-12 75.1 107 39.3
ECA234G4313 Erigeron canadensis HOM05D006153 ORTHO05D007701 3.7e-12 75.1 39 74.4
Medtr5g005180 Medicago truncatula HOM05D006153 ORTHO05D007701 3.7e-12 75.1 50 62.0
C05p45510 Brassica napus HOM05D006153 ORTHO05D007701 4.8e-12 74.7 107 41.1
BolC5t33274H Brassica oleracea HOM05D006153 ORTHO05D007701 4.8e-12 74.7 107 41.1
Sc14g0002580 Simmondsia chinensis HOM05D006153 ORTHO05D007701 4.8e-12 74.7 100 39.0
Haze_10299 Corylus avellana HOM05D006153 ORTHO05D007701 6.2e-12 74.3 94 39.4
Aqoxy6G02752 Aquilegia oxysepala HOM05D006153 ORTHO05D007701 8.2e-12 73.9 45 64.4
Carub.0003s1938 Capsella rubella HOM05D006153 ORTHO05D007701 8.2e-12 73.9 105 41.9
MELO3C018509.2 Cucumis melo HOM05D006153 ORTHO05D007701 8.2e-12 73.9 49 59.2
Os12g0507700 Oryza sativa ssp. japonica HOM05D006153 ORTHO05D007701 8.2e-12 73.9 42 71.4
Peaxi162Scf00016g00267 Petunia axillaris HOM05D006153 ORTHO05D007701 8.2e-12 73.9 41 68.3
Potri.009G091100 Populus trichocarpa HOM05D006153 ORTHO05D007701 8.2e-12 73.9 94 43.6
Zm00001eb138020 Zea mays HOM05D006153 ORTHO05D007701 8.2e-12 73.9 42 69.0
A05p30090 Brassica napus HOM05D006153 ORTHO05D007701 1.1e-11 73.6 103 40.8
BraA05t21849Z Brassica rapa HOM05D006153 ORTHO05D007701 1.1e-11 73.6 103 40.8
Thhalv10021914m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 1.1e-11 73.6 111 40.5
Rhsim05G0089900 Rhododendron simsii HOM05D006153 ORTHO05D007701 1.1e-11 73.6 52 57.7
AL3G32960 Arabidopsis lyrata HOM05D006153 ORTHO05D007701 1.4e-11 73.2 41 70.7
CARHR094970 Cardamine hirsuta HOM05D006153 ORTHO05D007701 1.4e-11 73.2 102 40.2
Ciclev10029838m.g Citrus clementina HOM05D006153 ORTHO05D007701 1.4e-11 73.2 110 38.2
CsaV3_7G007950 Cucumis sativus L. HOM05D006153 ORTHO05D007701 1.4e-11 73.2 49 59.2
Lsat_1_v5_gn_5_114460 Lactuca sativa HOM05D006153 ORTHO05D007701 1.4e-11 73.2 79 41.8
BcaB04g20697 Brassica carinata HOM05D006153 ORTHO05D007701 1.8e-11 72.8 104 42.3
A01p35130 Brassica napus HOM05D006153 ORTHO05D007701 1.8e-11 72.8 104 41.3
BraA01t03595Z Brassica rapa HOM05D006153 ORTHO05D007701 1.8e-11 72.8 104 41.3
ClCG02G006680 Citrullus lanatus HOM05D006153 ORTHO05D007701 1.8e-11 72.8 86 43.0
DCAR_001679 Daucus carota HOM05D006153 ORTHO05D007701 1.8e-11 72.8 47 63.8
ECA234G3366 Erigeron canadensis HOM05D006153 ORTHO05D007701 2.4e-11 72.4 45 62.2
DCAR_001674 Daucus carota HOM05D006153 ORTHO05D007701 3.1e-11 72.0 47 66.0
Eucgr.G00438 Eucalyptus grandis HOM05D006153 ORTHO05D007701 3.1e-11 72.0 94 37.2
Nn5g30510 Nelumbo nucifera HOM05D006153 ORTHO05D007701 3.1e-11 72.0 95 40.0
Nitab4.5_0001105g0220 Nicotiana tabacum HOM05D006153 ORTHO05D007701 3.1e-11 72.0 44 63.6
Nitab4.5_0004685g0060 Nicotiana tabacum HOM05D006153 ORTHO05D007701 3.1e-11 72.0 44 63.6
Sp3g17600 Schrenkiella parvula HOM05D006153 ORTHO05D007701 3.1e-11 72.0 109 40.4
Sopen01g049530 Solanum pennellii HOM05D006153 ORTHO05D007701 4.0e-11 71.6 41 68.3
Zm00001eb264740 Zea mays HOM05D006153 ORTHO05D007701 4.0e-11 71.6 106 36.8
BcaC09g48920 Brassica carinata HOM05D006153 ORTHO05D007701 6.9e-11 70.9 104 40.4
C01p44580 Brassica napus HOM05D006153 ORTHO05D007701 6.9e-11 70.9 104 40.4
Gohir.A13G045400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 6.9e-11 70.9 93 41.9
Psat4g228040 Pisum sativum HOM05D006153 ORTHO05D007701 9.0e-11 70.5 40 72.5
Haze_10289 Corylus avellana HOM05D006153 ORTHO05D007701 1.2e-10 70.1 101 36.6
HanXRQChr13g0425861 Helianthus annuus HOM05D006153 ORTHO05D007701 1.2e-10 70.1 45 60.0
Solyc01g107280.3 Solanum lycopersicum HOM05D006153 ORTHO05D007701 1.2e-10 70.1 103 42.7
MBI16_g15146_MAGBIO Magnolia biondii HOM05D006153 ORTHO05D007701 2.0e-10 69.3 106 36.8
BolC1t04422H Brassica oleracea HOM05D006153 ORTHO05D007701 2.6e-10 68.9 104 39.4
BraA01t03596Z Brassica rapa HOM05D006153 ORTHO05D007701 2.6e-10 68.9 104 39.4
Sabra09G0070400 Salix brachista HOM05D006153 ORTHO05D007701 2.6e-10 68.9 94 44.7
Aa31LG8G6290 Aethionema arabicum HOM05D006153 ORTHO05D007701 3.4e-10 68.6 61 50.8
TPR.G8325 Trifolium pratense HOM05D006153 ORTHO05D007701 4.5e-10 68.2 81 44.4
EL10Ac8g19360 Beta vulgaris HOM05D006153 ORTHO05D007701 1.3e-09 66.6 43 65.1
DCAR_003609 Daucus carota HOM05D006153 ORTHO05D007701 1.3e-09 66.6 47 57.4
PGSC0003DMG400025850 Solanum tuberosum HOM05D006153 ORTHO05D007701 1.3e-09 66.6 41 63.4
CANSAT25G0942 Cannabis sativa HOM05D006153 ORTHO05D007701 2.2e-09 65.9 52 55.8
Migut.I00275 Erythranthe guttata HOM05D006153 ORTHO05D007701 2.9e-09 65.5 104 39.4
Atru.chr1.2756 Acer truncatum HOM05D008232 ORTHO05D010390 3.8e-09 65.1 101 38.6
Hund06709 Selenicereus undatus HOM05D006153 ORTHO05D007701 3.8e-09 65.1 42 64.3
TAR383G0592 Trochodendron aralioides HOM05D008232 ORTHO05D010390 4.9e-09 64.7 39 61.5
A01p35140 Brassica napus HOM05D006153 ORTHO05D007701 6.5e-09 64.3 90 38.9
Cpa.g.sc2471.1 Carica papaya HOM05D008232 ORTHO05D010390 2.5e-08 62.4 64 53.1
Thhalv10021904m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 3.2e-08 62.0 41 58.5
CiPaw.03G112900 Carya illinoinensis HOM05D008232 ORTHO05D010390 4.2e-08 61.6 97 38.1
Thecc.06G043900 Theobroma cacao HOM05D000051 ORTHO05D000015 4.2e-08 61.6 52 59.6
Ciclev10026814m.g Citrus clementina HOM05D008232 ORTHO05D010390 7.1e-08 60.8 40 62.5
Gohir.A05G117900 Gossypium hirsutum HOM05D008232 ORTHO05D010390 9.3e-08 60.5 44 61.4
Aqoxy7G03060 Aquilegia oxysepala HOM05D008232 ORTHO05D010390 1.6e-07 59.7 85 40.0
Lsat_1_v5_gn_4_85220 Lactuca sativa HOM05D008232 ORTHO05D010390 2.1e-07 59.3 93 36.6
PSO478G5163 Papaver somniferum HOM05D008232 ORTHO05D010390 2.7e-07 58.9 47 53.2
HanXRQChr09g0274311 Helianthus annuus HOM05D008232 ORTHO05D010390 3.5e-07 58.5 93 37.6
PGR031G2543 Punica granatum HOM05D008232 ORTHO05D010390 3.5e-07 58.5 91 38.5
Aqoxy6G02750 Aquilegia oxysepala HOM05D000096 ORTHO05D000045 4.6e-07 58.2 36 66.7
AUR62027357 Chenopodium quinoa HOM05D006153 ORTHO05D007701 4.6e-07 58.2 85 35.3
AUR62031329 Chenopodium quinoa HOM05D006153 ORTHO05D007701 1.0e-06 57.0 41 56.1
Duzib235G0354 Durio zibethinus HOM05D008232 ORTHO05D010390 1.0e-06 57.0 93 38.7
Gohir.D05G118800 Gossypium hirsutum HOM05D008232 ORTHO05D010390 1.8e-06 56.2 74 40.5
Gorai.009G122800 Gossypium raimondii HOM05D008232 ORTHO05D010390 1.8e-06 56.2 74 40.5
COL.COLO4_26749 Corchorus olitorius HOM05D008232 ORTHO05D010390 2.3e-06 55.8 65 44.6
Eucgr.G01281 Eucalyptus grandis HOM05D006153 ORTHO05D007701 2.3e-06 55.8 89 34.8
FAN14G2943 Fragaria x ananassa HOM05D008232 ORTHO05D010390 2.3e-06 55.8 102 35.3
Manes.06G016400 Manihot esculenta HOM05D008232 ORTHO05D010390 3.9e-06 55.1 34 64.7
SGA_v2.0_scaffold624G53237 Striga asiatica HOM05D006153 ORTHO05D007701 5.1e-06 54.7 104 31.7
FvH4_6g27930 Fragaria vesca HOM05D008232 ORTHO05D010390 6.7e-06 54.3 102 34.3
FAN05G2300 Fragaria x ananassa HOM05D008232 ORTHO05D010390 6.7e-06 54.3 93 33.3
RcHm_v2.0_Chr2g0131491 Rosa chinensis HOM05D008232 ORTHO05D010390 6.7e-06 54.3 44 50.0
FAN02G3893 Fragaria x ananassa HOM05D008232 ORTHO05D010390 8.7e-06 53.9 93 33.3
PSO782G2603 Papaver somniferum HOM05D008232 ORTHO05D010390 8.7e-06 53.9 76 43.4


User provided reference genes

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