Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0020513 Lotus japonicus HOM05D004979 ORTHO05D006190 0.0e+00 1104.7 537 100.0
TPR.G33173 Trifolium pratense HOM05D004979 ORTHO05D006190 3.0e-280 968.0 527 87.1
TPR.G18815 Trifolium pratense HOM05D004979 ORTHO05D006190 1.3e-278 962.6 527 86.5
Medtr1g110490 Medicago truncatula HOM05D004979 ORTHO05D006190 4.2e-274 947.6 517 86.3
Psat6g226240 Pisum sativum HOM05D004979 ORTHO05D006190 5.5e-274 947.2 530 84.5
Lalb_Chr04g0254641 Lupinus albus HOM05D004979 ORTHO05D006190 3.1e-269 931.4 527 83.9
arahy.Tifrunner.gnm1.ann1.4I4LKP Arachis hypogaea HOM05D004979 ORTHO05D006190 1.5e-268 929.1 527 83.3
Glyma.20G116900 Glycine max HOM05D004979 ORTHO05D006190 3.4e-268 927.9 518 85.5
Glyma.10G273100 Glycine max HOM05D004979 ORTHO05D006190 8.5e-267 923.3 514 86.2
VMungo0720G1588 Vigna mungo HOM05D004979 ORTHO05D006190 2.5e-266 921.8 516 84.9
Phvul.007G028500 Phaseolus vulgaris HOM05D004979 ORTHO05D006190 8.2e-262 906.7 516 83.7
arahy.Tifrunner.gnm1.ann1.Q958TZ Arachis hypogaea HOM05D004979 ORTHO05D006190 3.1e-261 904.8 586 75.6
Lj4g0015757 Lotus japonicus HOM05D004979 ORTHO05D006190 2.8e-254 881.7 463 91.6
RcHm_v2.0_Chr1g0332651 Rosa chinensis HOM05D004979 ORTHO05D006190 5.2e-240 834.3 522 75.1
FAN01G0279 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.2e-236 823.2 523 74.0
Manes.08G106500 Manihot esculenta HOM05D004979 ORTHO05D006190 3.2e-234 815.1 510 73.5
CSS0020951 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 4.2e-234 814.7 513 73.5
QL03p011287 Quercus lobata HOM05D004979 ORTHO05D006190 1.6e-233 812.8 511 74.8
CSS0020926 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 2.7e-233 812.0 513 73.1
CiPaw.01G000500 Carya illinoinensis HOM05D004979 ORTHO05D006190 2.7e-233 812.0 523 73.2
MD08G1246100 Malus domestica HOM05D004979 ORTHO05D006190 2.7e-233 812.0 509 73.1
FAN06G2997 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.0e-232 810.1 534 71.9
EL10Ac8g20414 Beta vulgaris HOM05D004979 ORTHO05D006190 4.0e-232 808.1 513 72.5
Atru.chr12.1512 Acer truncatum HOM05D004979 ORTHO05D006190 5.2e-232 807.7 519 72.6
Potri.013G000600 Populus trichocarpa HOM05D004979 ORTHO05D006190 8.8e-232 807.0 509 73.5
Cc02_g36100 Coffea canephora HOM05D004979 ORTHO05D006190 1.4e-229 799.7 509 71.7
Migut.B00894 Erythranthe guttata HOM05D004979 ORTHO05D006190 1.8e-229 799.3 513 72.1
CANSAT56G2810 Cannabis sativa HOM05D004979 ORTHO05D006190 4.1e-229 798.1 508 72.8
Ciclev10028175m.g Citrus clementina HOM05D004979 ORTHO05D006190 2.0e-228 795.8 508 72.2
Cc02_g36050 Coffea canephora HOM05D004979 ORTHO05D006190 2.0e-228 795.8 509 70.9
Oeu061912.1 Olea europaea HOM05D004979 ORTHO05D006190 2.0e-228 795.8 513 71.5
MD15G1441300 Malus domestica HOM05D004979 ORTHO05D006190 2.7e-228 795.4 509 72.7
AL1G67180 Arabidopsis lyrata HOM05D004979 ORTHO05D006190 4.5e-228 794.7 518 69.3
CARHR054720 Cardamine hirsuta HOM05D004979 ORTHO05D006190 4.5e-228 794.7 514 69.8
PGR117G0001 Punica granatum HOM05D004979 ORTHO05D006190 5.9e-228 794.3 516 72.1
PGR004G0062 Punica granatum HOM05D004979 ORTHO05D006190 1.7e-227 792.7 516 71.7
THA.LOC104816839 Tarenaya hassleriana HOM05D004979 ORTHO05D006190 3.8e-227 791.6 528 69.3
AT1G57600 Arabidopsis thaliana HOM05D004979 ORTHO05D006190 1.1e-226 790.0 518 68.7
MSTRG.16439 Avicennia marina HOM05D004979 ORTHO05D006190 1.5e-226 789.6 513 71.2
Thecc.05G331000 Theobroma cacao HOM05D004979 ORTHO05D006190 3.3e-226 788.5 507 71.4
Sabra13G0000500 Salix brachista HOM05D004979 ORTHO05D006190 9.5e-226 786.9 523 70.7
Thhalv10023409m.g Eutrema salsugineum HOM05D004979 ORTHO05D006190 1.2e-225 786.6 518 69.1
Actinidia22849 Actinidia chinensis HOM05D004979 ORTHO05D006190 2.8e-225 785.4 513 71.9
Sed0004859 Sechium edule HOM05D004979 ORTHO05D006190 2.8e-225 785.4 526 68.4
Carub.0002s0703 Capsella rubella HOM05D004979 ORTHO05D006190 3.0e-224 781.9 518 68.5
TWI60G1029 Tripterygium wilfordii HOM05D004979 ORTHO05D006190 4.0e-224 781.6 508 70.7
MELO3C019579.2 Cucumis melo HOM05D004979 ORTHO05D006190 5.7e-223 777.7 525 67.4
PSO170G1924 Papaver somniferum HOM05D004979 ORTHO05D006190 5.7e-223 777.7 522 68.4
PSO357G0276 Papaver somniferum HOM05D004979 ORTHO05D006190 9.8e-223 776.9 509 69.9
Sp2g05910 Schrenkiella parvula HOM05D004979 ORTHO05D006190 1.3e-222 776.5 519 69.0
SpUn0028_0030 Schrenkiella parvula HOM05D004979 ORTHO05D006190 1.3e-222 776.5 519 69.0
Rhsim01G0213000 Rhododendron simsii HOM05D004979 ORTHO05D006190 8.3e-222 773.9 516 70.3
CAN.G756.6 Capsicum annuum HOM05D004979 ORTHO05D006190 5.4e-221 771.2 505 70.3
BcaC04g22085 Brassica carinata HOM05D004979 ORTHO05D006190 9.2e-221 770.4 514 68.9
BolC9t55284H Brassica oleracea HOM05D004979 ORTHO05D006190 9.2e-221 770.4 514 68.9
PGSC0003DMG400001886 Solanum tuberosum HOM05D004979 ORTHO05D006190 9.2e-221 770.4 505 70.3
CsaV3_6G013140 Cucumis sativus L. HOM05D004979 ORTHO05D006190 1.6e-220 769.6 525 67.2
Eucgr.I02672 Eucalyptus grandis HOM05D004979 ORTHO05D006190 4.6e-220 768.1 509 70.1
Solyc04g055190.4 Solanum lycopersicum HOM05D004979 ORTHO05D006190 5.9e-220 767.7 505 69.5
BraA09t37507Z Brassica rapa HOM05D004979 ORTHO05D006190 7.8e-220 767.3 514 68.3
BcaB07g31145 Brassica carinata HOM05D004979 ORTHO05D006190 1.0e-219 766.9 514 68.1
Hund05397 Selenicereus undatus HOM05D004979 ORTHO05D006190 8.6e-219 763.8 484 72.3
Aqoxy1G02435 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 3.3e-218 761.9 510 71.0
C09p23650 Brassica napus HOM05D004979 ORTHO05D006190 1.0e-216 756.9 538 65.8
Gohir.D13G003600 Gossypium hirsutum HOM05D004979 ORTHO05D006190 1.8e-216 756.1 521 68.3
CAN.G1715.7 Capsicum annuum HOM05D004979 ORTHO05D006190 5.2e-216 754.6 505 69.3
Gohir.A13G003700 Gossypium hirsutum HOM05D004979 ORTHO05D006190 6.8e-216 754.2 506 69.2
Gorai.013G003500 Gossypium raimondii HOM05D004979 ORTHO05D006190 1.5e-215 753.1 522 68.4
A09p18870 Brassica napus HOM05D004979 ORTHO05D006190 3.4e-215 751.9 539 65.1
Dinv24526 Davidia involucrata HOM05D004979 ORTHO05D006190 7.5e-215 750.7 512 69.7
ECA234G3247 Erigeron canadensis HOM05D004979 ORTHO05D006190 4.6e-212 741.5 489 69.5
AUR62014845 Chenopodium quinoa HOM05D004979 ORTHO05D006190 6.0e-212 741.1 515 68.5
HanXRQChr11g0327151 Helianthus annuus HOM05D004979 ORTHO05D006190 8.9e-208 727.2 460 72.4
unitig_22.g6127 Utricularia gibba HOM05D004979 ORTHO05D006190 1.2e-207 726.9 555 63.1
Duzib114G0072 Durio zibethinus HOM05D004979 ORTHO05D006190 3.7e-206 721.8 502 67.9
Aa31LG2G11270 Aethionema arabicum HOM05D004979 ORTHO05D006190 7.1e-205 717.6 525 65.1
Nitab4.5_0000081g0190 Nicotiana tabacum HOM05D004979 ORTHO05D006190 2.5e-202 709.1 512 66.2
Os05g0144000 Oryza sativa ssp. japonica HOM05D004979 ORTHO05D006190 1.5e-199 699.9 513 63.0
Peaxi162Scf00212g00515 Petunia axillaris HOM05D004979 ORTHO05D006190 5.8e-199 698.0 507 66.5
Haze_12430 Corylus avellana HOM05D004979 ORTHO05D006190 2.9e-198 695.7 594 59.8
FAN23G0202 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.4e-197 693.3 533 64.2
TAR636G2920 Trochodendron aralioides HOM05D004979 ORTHO05D006190 3.2e-197 692.2 439 74.3
ATR0730G180 Amborella trichopoda HOM05D004979 ORTHO05D006190 9.2e-197 690.6 518 62.9
Zm00001eb108680 Zea mays HOM05D004979 ORTHO05D006190 2.1e-196 689.5 513 62.2
vmacro19800 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 1.0e-195 687.2 690 51.6
SGA_v2.0_scaffold279G46769 Striga asiatica HOM05D004979 ORTHO05D006190 1.7e-195 686.4 516 64.3
Sc05g0004380 Simmondsia chinensis HOM05D004979 ORTHO05D006190 1.3e-190 670.2 436 70.4
SEGI_04903 Sequoiadendron giganteum HOM05D004979 ORTHO05D006190 3.8e-190 668.7 519 59.2
vmacro22232 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 1.4e-189 666.8 547 62.0
FAN03G1290 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.3e-187 660.2 574 58.9
Prupe.1G583400 Prunus persica HOM05D004979 ORTHO05D006190 1.1e-186 657.1 390 76.7
Lj9A238G55 Lonicera japonica HOM05D004979 ORTHO05D006190 1.3e-182 643.7 504 61.9
FvH4_7g05560 Fragaria vesca HOM05D004979 ORTHO05D006190 3.8e-182 642.1 387 75.7
Nitab4.5_0002303g0020 Nicotiana tabacum HOM05D004979 ORTHO05D006190 4.3e-178 628.6 512 60.2
Lsat_1_v5_gn_5_7121 Lactuca sativa HOM05D004979 ORTHO05D006190 3.1e-176 622.5 494 62.3
Nn7g38157 Nelumbo nucifera HOM05D004979 ORTHO05D006190 1.8e-168 596.7 491 60.5
HPP92_023772 Vanilla planifolia HOM05D004979 ORTHO05D006190 1.8e-168 596.7 411 65.9
Mapoly0050s0014 Marchantia polymorpha HOM05D004979 ORTHO05D006190 1.9e-165 586.6 528 52.8
Pp3c2_38270 Physcomitrium patens HOM05D004979 ORTHO05D006190 7.6e-159 564.7 523 52.0
GSVIVG01007211001 Vitis vinifera HOM05D004979 ORTHO05D006190 2.2e-158 563.1 353 75.1
SMO145G0201 Selaginella moellendorffii HOM05D004979 ORTHO05D006190 3.3e-154 549.3 507 52.9
FAN10G2429 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.8e-153 546.2 512 56.1
SalBow5G4822 Salvia bowleyana HOM05D004979 ORTHO05D006190 1.8e-147 526.9 323 76.2
GSVIVG01006954001 Vitis vinifera HOM05D004979 ORTHO05D006190 3.8e-142 509.2 295 79.7
SalBow3G2171 Salvia bowleyana HOM05D004979 ORTHO05D006190 3.7e-137 492.7 339 70.2
AagrBONN_evm.TU.Sc2ySwM_344.2018 Anthoceros agrestis HOM05D004979 ORTHO05D006190 1.8e-136 490.3 432 54.6
DCAR_006591 Daucus carota HOM05D004979 ORTHO05D006190 5.3e-136 488.8 510 50.4
Lj5C315T9 Lonicera japonica HOM05D004979 ORTHO05D006190 1.5e-133 480.7 289 76.8
CBR_g16989 Chara braunii HOM05D004979 ORTHO05D006190 2.0e-130 470.3 529 45.4
Rhsim04G0165200 Rhododendron simsii HOM05D004979 ORTHO05D006190 3.7e-129 466.1 357 64.4
AUR62017041 Chenopodium quinoa HOM05D004979 ORTHO05D006190 7.0e-128 461.8 337 66.8
GSVIVG01002014001 Vitis vinifera HOM05D004979 ORTHO05D006190 9.1e-120 434.9 243 81.5
Ca_17455_v3 Cicer arietinum L. HOM05D004979 ORTHO05D006190 3.5e-119 433.0 219 92.2
COL.COLO4_28214 Corchorus olitorius HOM05D004979 ORTHO05D006190 1.3e-110 404.4 286 68.5
Hma1.2p1_0759F.1_g213770 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 5.6e-109 399.1 219 82.6
Hma1.2p1_0759F.1_g213813 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 5.6e-109 399.1 219 82.6
Sopen04g025050 Solanum pennellii HOM05D004979 ORTHO05D006190 6.1e-108 395.6 221 79.6
Dinv22420 Davidia involucrata HOM05D004979 ORTHO05D006190 3.5e-79 300.1 518 36.5
GSVIVG01007210001 Vitis vinifera HOM05D004979 ORTHO05D006190 4.6e-79 299.7 233 59.7
GSVIVG01007430001 Vitis vinifera HOM05D004979 ORTHO05D006190 3.0e-78 297.0 206 65.5
Cpa.g.sc46.4 Carica papaya HOM05D004979 ORTHO05D006190 4.3e-77 293.1 156 82.7
Cfa022844 Carpinus fangiana HOM05D004979 ORTHO05D006190 5.4e-72 276.2 583 31.9
PRCOL_00000039 Prasinoderma coloniale HOM05D004979 ORTHO05D006190 1.2e-71 275.0 540 35.6
Cre14.g617150 Chlamydomonas reinhardtii HOM05D004979 ORTHO05D006190 1.3e-70 271.6 533 34.0
Cpa.g.sc46.2 Carica papaya HOM05D004979 ORTHO05D006190 3.0e-70 270.4 240 57.5
MCO11G558 Micromonas commoda HOM05D004979 ORTHO05D006190 4.3e-69 266.5 500 34.6
CAN.G1164.35 Capsicum annuum HOM05D004979 ORTHO05D006190 9.6e-69 265.4 169 72.2
Actinidia01657 Actinidia chinensis HOM05D004979 ORTHO05D006190 5.3e-59 233.0 353 43.3
HanXRQChr14g0439781 Helianthus annuus HOM05D004979 ORTHO05D006190 6.4e-57 226.1 190 57.9
SHI20228 Sapria himalayana HOM05D004979 ORTHO05D006190 1.3e-49 201.8 262 43.5
ClCG03G002030 Citrullus lanatus HOM05D004979 ORTHO05D006190 9.0e-43 179.1 179 48.0
DCAR_032148 Daucus carota HOM05D004979 ORTHO05D006190 9.3e-40 169.1 337 34.1
Lsat_1_v5_gn_8_74721 Lactuca sativa HOM05D004979 ORTHO05D006190 9.1e-35 152.5 85 74.1
MBI07_g39750_MAGBIO Magnolia biondii HOM05D004979 ORTHO05D006190 1.2e-31 142.1 128 57.0
GSVIVG01004371001 Vitis vinifera HOM05D004979 ORTHO05D006190 8.8e-30 136.0 103 64.1
CDE04G1277 Ceratophyllum demersum HOM05D004979 ORTHO05D006190 3.3e-29 134.0 99 65.7
SHI32754 Sapria himalayana HOM05D001374 ORTHO05D004296 4.5e-26 123.6 121 50.4
Actinidia27722 Actinidia chinensis HOM05D004979 ORTHO05D006190 1.0e-25 122.5 190 39.5
Lsat_1_v5_gn_8_74741 Lactuca sativa HOM05D004979 ORTHO05D006190 3.8e-25 120.6 102 60.8
QL03p011256 Quercus lobata HOM05D004979 ORTHO05D006190 6.5e-25 119.8 69 81.2
FAN19G1386 Fragaria x ananassa HOM05D004979 ORTHO05D006190 3.2e-24 117.5 85 64.7
Rhsim05G0125000 Rhododendron simsii HOM05D004979 ORTHO05D006190 8.5e-17 92.8 270 29.3
Aqoxy2G02599 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 2.0e-13 81.6 41 78.0
Medtr3g085120 Medicago truncatula HOM05D002545 ORTHO05D002335 2.0e-13 81.6 119 41.2
AagrBONN_evm.TU.Sc2ySwM_117.715 Anthoceros agrestis HOM05D004979 ORTHO05D006190 1.8e-11 75.1 99 39.4
SHI20227 Sapria himalayana HOM05D004979 ORTHO05D006190 7.7e-10 69.7 51 56.9
FAN19G1644 Fragaria x ananassa HOM05D004979 ORTHO05D006190 3.6e-07 60.8 107 40.2
FAN23G1107 Fragaria x ananassa HOM05D003102 ORTHO05D005239 2.3e-06 58.2 44 59.1


User provided reference genes

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