Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0020428 Lotus japonicus HOM05D014010 ORTHO05D010367 0.0e+00 1428.7 712 100.0
TPR.G25869 Trifolium pratense HOM05D014010 ORTHO05D010367 3.2e-197 692.6 837 49.6
Medtr1g069195 Medicago truncatula HOM05D014010 ORTHO05D010367 4.5e-191 672.2 829 49.6
Ca_09627_v3 Cicer arietinum L. HOM05D014010 ORTHO05D010367 3.8e-190 669.1 748 52.8
Glyma.13G129600 Glycine max HOM05D014010 ORTHO05D010367 5.5e-189 665.2 662 55.9
Psat6g065120 Pisum sativum HOM05D014010 ORTHO05D010367 2.9e-182 642.9 780 50.9
Phvul.007G155700 Phaseolus vulgaris HOM05D014010 ORTHO05D010367 3.6e-164 582.8 618 54.4
VMungo0720G0709 Vigna mungo HOM05D014010 ORTHO05D010367 3.8e-158 562.8 704 48.6
arahy.Tifrunner.gnm1.ann1.201IN6 Arachis hypogaea HOM05D014010 ORTHO05D010367 7.3e-125 452.2 818 39.6
Lalb_Chr02g0152931 Lupinus albus HOM05D014010 ORTHO05D010367 4.4e-122 443.0 603 46.6
arahy.Tifrunner.gnm1.ann1.S5Q210 Arachis hypogaea HOM05D014010 ORTHO05D010367 2.8e-84 317.4 609 37.8
QL09p043802 Quercus lobata HOM05D009210 ORTHO05D010367 6.4e-28 130.2 724 25.4
Cfa002512 Carpinus fangiana HOM05D009210 ORTHO05D010367 1.1e-27 129.4 612 26.3
Manes.13G042500 Manihot esculenta HOM05D009210 ORTHO05D010367 3.9e-25 120.9 350 32.3
QL07p009176 Quercus lobata HOM05D009210 ORTHO05D010367 4.7e-23 114.0 311 31.8
QL09p043508 Quercus lobata HOM05D009210 ORTHO05D010367 4.7e-23 114.0 311 31.8
QL09p043653 Quercus lobata HOM05D009210 ORTHO05D010367 1.8e-22 112.1 754 25.5
Gohir.D07G208750 Gossypium hirsutum HOM05D009210 ORTHO05D010367 5.8e-21 107.1 340 31.2
Gorai.001G235700 Gossypium raimondii HOM05D009210 ORTHO05D010367 2.2e-20 105.1 340 30.9
Gohir.A07G202550 Gossypium hirsutum HOM05D009210 ORTHO05D010367 1.1e-19 102.8 384 30.7
Actinidia30107 Actinidia chinensis HOM05D009210 ORTHO05D010367 1.6e-18 99.0 266 30.8
CANSAT01G1047 Cannabis sativa HOM05D009210 ORTHO05D010367 1.6e-18 99.0 289 31.1
Duzib211G0683 Durio zibethinus HOM05D009210 ORTHO05D010367 1.6e-18 99.0 323 31.0
FAN24G1655 Fragaria x ananassa HOM05D016859 ORTHO05D010367 1.6e-18 99.0 711 24.2
FvH4_2g19950 Fragaria vesca HOM05D016859 ORTHO05D010367 6.0e-18 97.1 711 24.3
TWI59G1397 Tripterygium wilfordii HOM05D009210 ORTHO05D010367 8.6e-17 93.2 299 30.4
Lj1A79G19 Lonicera japonica HOM05D009210 ORTHO05D010367 1.1e-16 92.8 339 27.7
RcHm_v2.0_Chr6g0285611 Rosa chinensis HOM05D016859 ORTHO05D010367 1.5e-16 92.4 331 31.7
CARHR110740 Cardamine hirsuta HOM05D012015 ORTHO05D014750 1.6e-15 89.0 296 30.1
FAN15G1208 Fragaria x ananassa HOM05D016859 ORTHO05D010367 1.6e-15 89.0 387 28.7
THA.LOC104814711 Tarenaya hassleriana HOM05D012015 ORTHO05D014750 3.6e-15 87.8 301 27.6
HanXRQChr13g0408971 Helianthus annuus HOM05D040207 ORTHO05D010367 1.8e-14 85.5 296 29.4
Prupe.8G209900 Prunus persica HOM05D016859 ORTHO05D010367 2.4e-14 85.1 205 32.7
Atru.chr5.1921 Acer truncatum HOM05D009210 ORTHO05D010367 5.2e-14 84.0 166 36.7
Hund18342 Selenicereus undatus HOM05D017699 ORTHO05D019543 5.2e-14 84.0 290 30.0
CsaV3_7G025420 Cucumis sativus L. HOM05D026148 ORTHO05D010367 8.9e-14 83.2 175 38.3
FAN27G2643 Fragaria x ananassa HOM05D016859 ORTHO05D010367 1.2e-13 82.8 738 23.6
Ciclev10019870m.g Citrus clementina HOM05D009210 ORTHO05D010367 2.0e-13 82.0 152 34.9
MELO3C024146.2 Cucumis melo HOM05D026148 ORTHO05D010367 2.6e-13 81.6 175 37.7
CiPaw.04G192300 Carya illinoinensis HOM05D009210 ORTHO05D010367 4.9e-12 77.4 143 35.7
ClCG09G009440 Citrullus lanatus HOM05D026148 ORTHO05D010367 4.9e-12 77.4 202 34.7
COL.COLO4_08165 Corchorus olitorius HOM05D009210 ORTHO05D010367 1.9e-11 75.5 345 27.8
Sed0006753 Sechium edule HOM05D026148 ORTHO05D010367 4.2e-11 74.3 305 30.2
Nn3g19852 Nelumbo nucifera HOM05D009210 ORTHO05D010367 5.4e-11 73.9 261 29.9
Oeu052100.2 Olea europaea HOM05D013334 ORTHO05D015998 7.1e-11 73.6 229 31.9
Thecc.01G245200 Theobroma cacao HOM05D009210 ORTHO05D010367 1.2e-10 72.8 231 28.1
Haze_24738 Corylus avellana HOM05D009210 ORTHO05D010367 1.6e-10 72.4 296 25.7
QL09p043642 Quercus lobata HOM05D009210 ORTHO05D010367 2.1e-10 72.0 212 31.1
Sp3g33480 Schrenkiella parvula HOM05D012015 ORTHO05D014750 3.5e-10 71.2 270 28.1
Cpa.g.sc8.212 Carica papaya HOM05D009210 ORTHO05D010367 1.0e-09 69.7 156 32.1
ECA236G3347 Erigeron canadensis HOM05D040207 ORTHO05D010367 3.0e-09 68.2 258 28.7
Peaxi162Scf00517g00315 Petunia axillaris HOM05D013334 ORTHO05D015998 3.0e-09 68.2 234 29.9
PGR044G0436 Punica granatum HOM05D009210 ORTHO05D010367 3.0e-09 68.2 242 29.3
Nitab4.5_0002330g0020 Nicotiana tabacum HOM05D013334 ORTHO05D015998 5.1e-09 67.4 196 34.2
Ah.08g213820 Amaranthus hybridus HOM05D017699 ORTHO05D019543 7.3e-08 63.5 287 25.8
AL3G47840 Arabidopsis lyrata HOM05D012015 ORTHO05D014750 7.3e-08 63.5 323 26.6
Carub.0003s3458 Capsella rubella HOM05D012015 ORTHO05D014750 9.6e-08 63.2 263 26.2
MSTRG.17532 Avicennia marina HOM05D013334 ORTHO05D015998 1.6e-07 62.4 246 30.9
AT2G20250 Arabidopsis thaliana HOM05D012015 ORTHO05D014750 2.8e-07 61.6 258 28.7
Nitab4.5_0001557g0020 Nicotiana tabacum HOM05D013334 ORTHO05D015998 4.8e-07 60.8 248 29.8
BraA09t36920Z Brassica rapa HOM05D012015 ORTHO05D014750 6.2e-07 60.5 342 25.4
Thhalv10001946m.g Eutrema salsugineum HOM05D012015 ORTHO05D014750 6.2e-07 60.5 262 27.9
A09p12760 Brassica napus HOM05D012015 ORTHO05D014750 8.1e-07 60.1 280 27.9
DCAR_000542 Daucus carota HOM05D009210 ORTHO05D010367 8.1e-07 60.1 264 26.5
Sopen06g035070 Solanum pennellii HOM05D013334 ORTHO05D015998 8.1e-07 60.1 221 32.1
SGA_v2.0_scaffold3G01596 Striga asiatica HOM05D009210 ORTHO05D015998 8.1e-07 60.1 234 29.5
PSO764G0241 Papaver somniferum HOM05D024193 ORTHO05D010367 1.4e-06 59.3 228 28.1
SalBow6G1944 Salvia bowleyana HOM05D013334 ORTHO05D010367 1.4e-06 59.3 223 28.7
C09p15130 Brassica napus HOM05D012015 ORTHO05D014750 1.8e-06 58.9 291 28.2
CAN.G771.49 Capsicum annuum HOM05D013334 ORTHO05D015998 1.8e-06 58.9 236 30.9
Aa31LG8G17240 Aethionema arabicum HOM05D012015 ORTHO05D014750 6.9e-06 57.0 290 25.2


User provided reference genes

Program Settings