Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 1.6e-52 209.1 105 100.0
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 7.4e-50 200.3 106 96.2
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 7.4e-50 200.3 105 96.2
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 3.9e-35 151.4 105 74.3
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 6.7e-35 150.6 104 73.1
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 4.4e-34 147.9 102 73.5
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 1.7e-33 146.0 105 66.7
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 4.8e-33 144.4 102 72.5
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.8e-32 142.5 102 70.6
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 4.1e-32 141.4 102 68.6
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 5.3e-32 141.0 103 69.9
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 5.3e-32 141.0 105 68.6
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 7.0e-32 140.6 102 71.6
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 7.0e-32 140.6 102 67.6
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 9.1e-32 140.2 103 69.9
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 1.2e-31 139.8 105 68.6
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 2.0e-31 139.0 102 70.6
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 2.0e-31 139.0 102 70.6
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 2.0e-31 139.0 102 70.6
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 2.0e-31 139.0 102 70.6
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 2.0e-31 139.0 101 69.3
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 2.6e-31 138.7 103 68.9
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 5.9e-31 137.5 105 67.6
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 5.9e-31 137.5 108 67.6
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 5.9e-31 137.5 105 66.7
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 5.9e-31 137.5 102 69.6
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 7.7e-31 137.1 105 68.6
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 7.7e-31 137.1 102 69.6
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 1.0e-30 136.7 102 68.6
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 1.0e-30 136.7 105 65.7
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 1.7e-30 136.0 102 67.6
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 2.2e-30 135.6 101 67.3
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 2.2e-30 135.6 102 68.6
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 2.2e-30 135.6 102 68.6
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 5.0e-30 134.4 102 67.6
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 5.0e-30 134.4 103 68.0
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 6.5e-30 134.0 102 68.6
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 6.5e-30 134.0 102 65.7
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 6.5e-30 134.0 100 67.0
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 6.5e-30 134.0 100 67.0
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 6.5e-30 134.0 101 66.3
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 8.5e-30 133.7 101 65.3
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 8.5e-30 133.7 102 65.7
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 1.1e-29 133.3 102 69.6
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 1.1e-29 133.3 102 69.6
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 1.1e-29 133.3 104 65.4
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 1.1e-29 133.3 102 67.6
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 1.1e-29 133.3 102 67.6
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 1.1e-29 133.3 102 67.6
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 1.1e-29 133.3 102 67.6
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 1.5e-29 132.9 101 66.3
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 1.5e-29 132.9 100 67.0
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 1.9e-29 132.5 102 67.6
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 2.5e-29 132.1 102 67.6
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 4.2e-29 131.3 100 66.0
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 9.4e-29 130.2 99 65.7
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 9.4e-29 130.2 102 66.7
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 1.2e-28 129.8 102 65.7
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 1.6e-28 129.4 104 62.5
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 2.1e-28 129.0 103 64.1
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 2.7e-28 128.6 101 63.4
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 4.7e-28 127.9 101 65.3
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 4.7e-28 127.9 101 64.4
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 6.1e-28 127.5 103 64.1
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 1.0e-27 126.7 102 65.7
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 1.8e-27 125.9 95 68.4
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 3.0e-27 125.2 101 62.4
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 3.0e-27 125.2 101 63.4
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 5.2e-27 124.4 100 63.0
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 6.7e-27 124.0 107 62.6
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 6.7e-27 124.0 101 62.4
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 1.5e-26 122.9 102 61.8
BraA08t33803Z Brassica rapa HOM05D003524 ORTHO05D003988 2.0e-26 122.5 94 67.0
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 3.3e-26 121.7 95 66.3
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 5.7e-26 120.9 102 60.8
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 1.3e-25 119.8 102 61.8
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 1.7e-25 119.4 102 60.8
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 1.7e-25 119.4 102 60.8
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.7e-25 119.4 104 61.5
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 1.7e-25 119.4 102 59.8
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 1.7e-25 119.4 102 60.8
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 1.8e-24 115.9 93 64.5
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 9.1e-24 113.6 97 58.8
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 9.1e-24 113.6 104 59.6
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 5.9e-23 110.9 89 69.7
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 1.7e-22 109.4 90 66.7
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 2.9e-22 108.6 90 65.6
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 3.8e-22 108.2 106 57.5
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 8.5e-22 107.1 100 58.0
Sed0019715 Sechium edule HOM05D003524 ORTHO05D003988 1.9e-21 105.9 105 57.1
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 2.5e-21 105.5 95 61.1
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 9.4e-21 103.6 94 60.6
Os09g0127700 Oryza sativa ssp. japonica HOM05D003524 ORTHO05D003988 1.8e-19 99.4 94 58.5
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 7.5e-18 94.0 101 55.4
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 9.8e-18 93.6 79 62.0
Zm00001eb095580 Zea mays HOM05D003524 ORTHO05D003988 1.7e-17 92.8 100 55.0
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 1.8e-16 89.4 88 54.5
FAN15G0945 Fragaria x ananassa HOM05D003524 ORTHO05D003988 5.4e-16 87.8 80 58.8
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 2.7e-15 85.5 83 54.2
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 2.7e-15 85.5 83 54.2
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 1.0e-14 83.6 80 56.2
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 1.3e-14 83.2 86 57.0
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 1.3e-14 83.2 86 58.1
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 7.2e-13 77.4 88 51.1
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 1.6e-12 76.3 90 51.1
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 4.7e-12 74.7 81 48.1
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 1.8e-11 72.8 61 62.3
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 3.0e-11 72.0 70 55.7
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 4.0e-11 71.6 91 50.5
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 4.0e-11 71.6 90 51.1
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 5.2e-11 71.2 67 58.2
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 5.2e-11 71.2 96 44.8
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 5.2e-11 71.2 61 62.3
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 5.2e-11 71.2 74 55.4
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 6.8e-11 70.9 58 58.6
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 1.2e-10 70.1 70 54.3
Prupe.1G394100 Prunus persica HOM05D003524 ORTHO05D003988 1.5e-10 69.7 95 45.3
AUR62032414 Chenopodium quinoa HOM05D003524 ORTHO05D003988 2.0e-10 69.3 101 43.6
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 3.4e-10 68.6 61 57.4
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 5.7e-10 67.8 61 55.7
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 5.7e-10 67.8 61 55.7
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 9.8e-10 67.0 82 47.6
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 1.3e-09 66.6 89 48.3
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 1.3e-09 66.6 78 50.0
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 1.3e-09 66.6 63 55.6
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 1.7e-09 66.2 61 54.1
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.7e-09 66.2 61 55.7
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 1.7e-09 66.2 94 42.6
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 2.2e-09 65.9 72 50.0
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 2.2e-09 65.9 59 57.6
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 2.2e-09 65.9 61 55.7
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 2.8e-09 65.5 78 52.6
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 2.8e-09 65.5 59 59.3
Nitab4.5_0002947g0020 Nicotiana tabacum HOM05D003524 ORTHO05D003988 3.7e-09 65.1 47 68.1
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 4.9e-09 64.7 74 52.7
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 1.1e-08 63.5 80 45.0
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 1.1e-08 63.5 80 45.0
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 1.1e-08 63.5 100 38.0
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 1.4e-08 63.2 71 49.3
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 1.8e-08 62.8 66 47.0
ECA240G1327 Erigeron canadensis HOM05D003524 ORTHO05D003988 1.8e-08 62.8 62 56.5
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 1.8e-08 62.8 78 47.4
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 3.1e-08 62.0 61 52.5
Gohir.D05G054800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 4.1e-08 61.6 59 59.3
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 4.1e-08 61.6 61 52.5
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 4.1e-08 61.6 46 63.0
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 5.4e-08 61.2 61 50.8
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 9.2e-08 60.5 61 50.8
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 9.2e-08 60.5 105 37.1
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.2e-07 60.1 73 50.7
Lsat_1_v5_gn_7_49941 Lactuca sativa HOM05D003524 ORTHO05D003988 2.7e-07 58.9 64 51.6
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 4.5e-07 58.2 87 42.5
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 4.5e-07 58.2 87 42.5
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 4.5e-07 58.2 87 42.5
Nitab4.5_0002011g0090 Nicotiana tabacum HOM05D003524 ORTHO05D003988 4.5e-07 58.2 61 41.0
AL6G44970 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 5.9e-07 57.8 73 52.1
Gohir.A05G053200 Gossypium hirsutum HOM05D003524 ORTHO05D003988 1.0e-06 57.0 46 60.9
Gorai.009G056500 Gossypium raimondii HOM05D003524 ORTHO05D003988 1.3e-06 56.6 46 63.0
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 1.3e-06 56.6 70 45.7
Nitab4.5_0003563g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.7e-06 56.2 63 39.7
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.7e-06 56.2 61 45.9
Mapoly0006s0148 Marchantia polymorpha HOM05D003524 ORTHO05D003988 2.3e-06 55.8 80 42.5
Carub.0006s2963 Capsella rubella HOM05D003524 ORTHO05D003988 5.0e-06 54.7 62 56.5
BcaB01g02731 Brassica carinata HOM05D003524 ORTHO05D003988 6.6e-06 54.3 73 49.3
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 6.6e-06 54.3 82 41.5
AagrBONN_evm.TU.Sc2ySwM_368.420 Anthoceros agrestis HOM05D003524 ORTHO05D003988 8.6e-06 53.9 48 54.2
CARHR255710 Cardamine hirsuta HOM05D003524 ORTHO05D003988 8.6e-06 53.9 62 54.8
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 8.6e-06 53.9 77 40.3


User provided reference genes

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