Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 3.4e-228 795.0 518 100.0
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 5.8e-188 661.4 454 83.5
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 9.9e-188 660.6 471 81.3
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 2.4e-186 656.0 466 82.4
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 4.1e-186 655.2 406 90.4
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 4.1e-186 655.2 465 82.8
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 7.1e-186 654.4 455 83.7
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 1.1e-183 647.1 448 83.0
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 2.3e-176 622.9 526 75.1
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 7.9e-169 597.8 406 85.5
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 8.7e-168 594.3 464 76.3
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 9.0e-165 584.3 408 83.3
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 7.6e-164 581.3 406 82.8
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 2.2e-163 579.7 406 81.8
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 3.2e-162 575.9 406 81.0
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 2.7e-161 572.8 406 81.0
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 1.8e-160 570.1 409 81.2
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 8.7e-160 567.8 407 80.8
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.9e-159 566.6 438 77.6
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 1.3e-158 563.9 407 82.3
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 4.8e-158 562.0 403 81.4
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 1.4e-157 560.5 407 79.6
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 1.2e-156 557.4 404 79.2
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 2.0e-156 556.6 387 83.5
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 1.0e-155 554.3 447 69.4
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 4.9e-155 552.0 400 78.5
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 1.4e-154 550.4 400 79.2
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 2.7e-153 546.2 416 69.5
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 1.3e-152 543.9 381 81.9
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 1.8e-152 543.5 387 81.4
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 1.9e-151 540.0 406 79.3
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 3.3e-151 539.3 406 77.8
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 3.3e-151 539.3 406 77.6
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 1.3e-150 537.3 403 78.7
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 2.1e-150 536.6 386 80.3
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 4.1e-149 532.3 402 78.6
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 5.3e-149 531.9 466 64.2
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 3.4e-148 529.3 412 74.3
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 1.3e-147 527.3 406 77.1
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 2.2e-147 526.6 381 81.1
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 2.9e-147 526.2 391 79.3
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 6.5e-147 525.0 400 77.0
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 8.5e-147 524.6 400 77.2
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 1.4e-146 523.9 406 76.8
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.2e-146 522.3 406 77.6
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 9.3e-146 521.2 477 68.1
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 1.2e-145 520.8 404 75.7
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.6e-145 520.4 406 77.3
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 2.7e-145 519.6 403 76.2
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 6.1e-145 518.5 406 75.9
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 1.3e-144 517.3 396 78.8
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 2.3e-144 516.5 403 76.2
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 5.1e-144 515.4 406 77.1
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 1.5e-143 513.8 419 68.0
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 3.3e-143 512.7 356 77.8
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 4.3e-143 512.3 408 75.7
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 5.7e-143 511.9 404 75.2
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 9.7e-143 511.1 404 75.0
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 1.6e-142 510.4 409 75.1
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 2.2e-142 510.0 409 75.6
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 4.8e-142 508.8 400 77.0
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 1.4e-141 507.3 409 72.9
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 1.8e-141 506.9 410 74.9
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 2.4e-141 506.5 383 78.6
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 3.1e-141 506.1 410 74.6
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 4.1e-141 505.8 409 74.3
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 4.1e-141 505.8 406 75.9
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 6.9e-141 505.0 410 74.4
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 2.0e-140 503.4 402 75.6
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 5.9e-140 501.9 406 72.4
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 3.8e-139 499.2 401 73.1
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 1.4e-138 497.3 403 73.9
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 1.4e-138 497.3 400 72.8
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 1.9e-138 496.9 406 73.4
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 3.2e-138 496.1 406 73.2
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 9.4e-138 494.6 403 72.2
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 1.6e-137 493.8 401 72.1
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 2.7e-137 493.0 406 73.4
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 2.7e-137 493.0 406 73.4
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 3.6e-137 492.7 402 73.1
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 6.1e-137 491.9 403 73.2
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 6.1e-137 491.9 401 71.8
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 1.0e-136 491.1 406 72.4
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 1.4e-136 490.7 401 72.3
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 3.9e-136 489.2 391 73.9
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 3.9e-136 489.2 406 74.4
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 2.6e-135 486.5 401 72.3
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 3.3e-135 486.1 401 72.1
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 7.4e-135 485.0 404 73.0
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 1.3e-134 484.2 401 71.6
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 1.3e-134 484.2 401 71.6
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.2e-134 483.4 404 72.8
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 3.7e-134 482.6 402 70.9
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 1.1e-133 481.1 396 71.7
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 2.4e-133 479.9 411 64.7
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 3.1e-133 479.6 396 71.5
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 3.1e-133 479.6 396 71.5
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 5.3e-133 478.8 436 69.0
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 4.5e-132 475.7 421 70.1
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 1.6e-129 467.2 403 70.2
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 1.8e-128 463.8 400 71.2
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 5.2e-128 462.2 403 69.0
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 1.1e-127 461.1 406 69.0
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 4.4e-127 459.1 412 68.9
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 4.4e-127 459.1 405 69.1
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 2.1e-121 440.3 403 68.5
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 4.7e-121 439.1 375 70.9
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 9.7e-119 431.4 397 67.3
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 1.3e-118 431.0 404 67.3
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 3.7e-118 429.5 406 68.5
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 5.9e-116 422.2 400 66.0
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 4.2e-114 416.0 467 59.3
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 3.8e-107 392.9 385 66.0
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 8.6e-107 391.7 447 53.7
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 1.1e-106 391.3 415 57.3
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 4.2e-106 389.4 385 64.7
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 1.5e-103 380.9 307 74.9
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 1.3e-99 367.9 295 68.8
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 2.9e-99 366.7 307 73.3
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 1.6e-97 360.9 369 62.1
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 1.4e-96 357.8 391 55.2
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 5.7e-95 352.4 330 57.9
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 2.9e-94 350.1 279 64.2
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 1.2e-87 328.2 344 63.4
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 2.0e-84 317.4 263 75.7
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 5.2e-80 302.8 409 48.9
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 2.0e-79 300.8 605 38.8
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 3.2e-77 293.5 266 63.5
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 3.0e-75 287.0 282 68.4
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 8.9e-72 275.4 475 40.4
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 2.0e-71 274.2 395 40.5
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.1e-50 205.3 152 67.8
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 2.6e-47 194.1 131 74.8
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 8.4e-46 189.1 141 66.0
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.4e-45 187.6 141 65.2
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 2.4e-45 187.6 141 65.2
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 3.0e-43 180.6 181 57.5
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 9.0e-40 169.1 168 54.8
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 2.0e-39 167.9 134 61.2
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 5.8e-39 166.4 134 60.4
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 1.8e-35 154.8 95 83.2
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.5e-34 151.8 171 50.9
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.4e-32 145.2 128 57.8
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 3.1e-32 144.1 306 34.0
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 5.7e-26 123.2 106 61.3
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 6.3e-25 119.8 73 78.1
Lsat_1_v5_gn_1_84960 Lactuca sativa HOM05D004623 ORTHO05D005100 1.0e-22 112.5 67 83.6
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 1.1e-21 109.0 81 67.9
TPR.G39353 Trifolium pratense HOM05D004623 ORTHO05D005100 1.2e-20 105.5 56 91.1
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 5.1e-19 100.1 61 78.7
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 2.6e-18 97.8 121 48.8
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 9.7e-18 95.9 316 26.9
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 1.9e-13 81.6 71 64.8
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 9.4e-13 79.3 52 76.9
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 3.9e-11 73.9 94 50.0
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 2.6e-10 71.2 122 40.2


User provided reference genes

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