Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0019877 Lotus japonicus HOM05D006901 ORTHO05D008582 1.3e-76 289.7 152 100.0
Lj5g0009364 Lotus japonicus HOM05D006901 ORTHO05D008582 1.6e-66 256.1 152 91.4
TPR.G792 Trifolium pratense HOM05D006901 ORTHO05D008582 3.6e-53 211.8 157 73.2
Psat6g189960 Pisum sativum HOM05D006901 ORTHO05D008582 1.1e-51 206.8 156 72.4
Ca_10653_v3 Cicer arietinum L. HOM05D006901 ORTHO05D008582 4.1e-49 198.4 157 71.3
Phvul.007G084500 Phaseolus vulgaris HOM05D006901 ORTHO05D008582 4.5e-48 194.9 157 68.8
Medtr1g097570 Medicago truncatula HOM05D006901 ORTHO05D008582 7.7e-48 194.1 157 68.8
VMungo0720G0575 Vigna mungo HOM05D006901 ORTHO05D008582 1.1e-46 190.3 157 68.8
Glyma.20G171000 Glycine max HOM05D006901 ORTHO05D008582 2.5e-46 189.1 156 67.3
Glyma.10G220600 Glycine max HOM05D006901 ORTHO05D008582 4.7e-45 184.9 157 66.2
Lalb_Chr21g0305611 Lupinus albus HOM05D006901 ORTHO05D008582 3.9e-44 181.8 157 67.5
arahy.Tifrunner.gnm1.ann1.96Y3Q8 Arachis hypogaea HOM05D006901 ORTHO05D008582 4.2e-38 161.8 152 62.5
arahy.Tifrunner.gnm1.ann1.YZ7MCJ Arachis hypogaea HOM05D006901 ORTHO05D008582 2.1e-37 159.5 152 61.8
QL02p036605 Quercus lobata HOM05D006901 ORTHO05D008582 3.0e-36 155.6 159 59.1
QL02p037117 Quercus lobata HOM05D006901 ORTHO05D008582 3.3e-35 152.1 159 59.1
Prupe.8G043100 Prunus persica HOM05D006901 ORTHO05D008582 3.7e-34 148.7 122 66.4
MD05G1035400 Malus domestica HOM05D006901 ORTHO05D008582 1.1e-33 147.1 122 65.6
MD10G1037700 Malus domestica HOM05D006901 ORTHO05D008582 2.4e-33 146.0 130 61.5
Duzib116G0108 Durio zibethinus HOM05D006901 ORTHO05D008582 2.0e-32 142.9 177 52.0
Haze_17820 Corylus avellana HOM05D006901 ORTHO05D008582 2.7e-32 142.5 177 53.1
TAR376G0851 Trochodendron aralioides HOM05D006901 ORTHO05D008582 2.7e-32 142.5 180 52.2
CiPaw.16G007900 Carya illinoinensis HOM05D006901 ORTHO05D008582 7.7e-32 141.0 152 57.2
Gohir.D06G116100 Gossypium hirsutum HOM05D006901 ORTHO05D008582 7.7e-32 141.0 171 55.0
Gorai.010G133900 Gossypium raimondii HOM05D006901 ORTHO05D008582 7.7e-32 141.0 171 55.0
CANSAT25G0969 Cannabis sativa HOM05D006901 ORTHO05D008582 1.3e-31 140.2 134 63.4
Duzib041G0277 Durio zibethinus HOM05D006901 ORTHO05D008582 1.3e-31 140.2 177 52.0
Gohir.A06G111900 Gossypium hirsutum HOM05D006901 ORTHO05D008582 2.9e-31 139.0 103 73.8
Thecc.08G162300 Theobroma cacao HOM05D006901 ORTHO05D008582 2.9e-31 139.0 142 59.2
Cpa.g.sc26.114 Carica papaya HOM05D006901 ORTHO05D008582 3.8e-31 138.7 94 78.7
Duzib093G0981 Durio zibethinus HOM05D006901 ORTHO05D008582 3.8e-31 138.7 141 59.6
Actinidia17766 Actinidia chinensis HOM05D006901 ORTHO05D008582 6.5e-31 137.9 144 54.2
TWI34G1320 Tripterygium wilfordii HOM05D006901 ORTHO05D008582 1.1e-30 137.1 143 58.0
Ah.16g108540 Amaranthus hybridus HOM05D006901 ORTHO05D008582 1.5e-30 136.7 164 56.1
Atru.chr13.1989 Acer truncatum HOM05D006901 ORTHO05D008582 3.2e-30 135.6 161 54.0
Aa31LG4G8920 Aethionema arabicum HOM05D006901 ORTHO05D008582 4.2e-30 135.2 147 59.9
TWI60G0595 Tripterygium wilfordii HOM05D006901 ORTHO05D008582 5.5e-30 134.8 99 72.7
THA.LOC104810483 Tarenaya hassleriana HOM05D006901 ORTHO05D008582 7.2e-30 134.4 92 79.3
HPP92_002808 Vanilla planifolia HOM05D006901 ORTHO05D008582 9.4e-30 134.0 126 61.9
HPP92_002865 Vanilla planifolia HOM05D006901 ORTHO05D008582 9.4e-30 134.0 126 61.9
Actinidia15615 Actinidia chinensis HOM05D006901 ORTHO05D008582 1.2e-29 133.7 143 53.8
Potri.002G063100 Populus trichocarpa HOM05D006901 ORTHO05D008582 1.2e-29 133.7 184 50.0
Dinv02470 Davidia involucrata HOM05D006901 ORTHO05D008582 1.6e-29 133.3 172 48.3
FAN15G3138 Fragaria x ananassa HOM05D006901 ORTHO05D008582 1.6e-29 133.3 136 58.8
FAN20G0005 Fragaria x ananassa HOM05D006901 ORTHO05D008582 1.6e-29 133.3 136 58.8
Manes.18G095700 Manihot esculenta HOM05D006901 ORTHO05D008582 2.7e-29 132.5 87 80.5
PGR102G0180 Punica granatum HOM05D006901 ORTHO05D008582 2.7e-29 132.5 90 76.7
SalBow7G3034 Salvia bowleyana HOM05D006901 ORTHO05D008582 2.7e-29 132.5 161 52.8
Sed0007149 Sechium edule HOM05D006901 ORTHO05D008582 2.7e-29 132.5 158 53.8
Nitab4.5_0003443g0040 Nicotiana tabacum HOM05D006901 ORTHO05D008582 3.6e-29 132.1 166 50.0
FvH4_2g12890 Fragaria vesca HOM05D006901 ORTHO05D008582 4.7e-29 131.7 135 59.3
FAN24G1802 Fragaria x ananassa HOM05D006901 ORTHO05D008582 4.7e-29 131.7 135 59.3
ClCG08G007260 Citrullus lanatus HOM05D006901 ORTHO05D008582 6.1e-29 131.3 105 69.5
Nitab4.5_0003178g0070 Nicotiana tabacum HOM05D006901 ORTHO05D008582 6.1e-29 131.3 165 48.5
PGR042G3646 Punica granatum HOM05D006901 ORTHO05D008582 6.1e-29 131.3 90 75.6
AL2G31300 Arabidopsis lyrata HOM05D006901 ORTHO05D008582 8.0e-29 131.0 147 57.1
Sc02g0003760 Simmondsia chinensis HOM05D006901 ORTHO05D008582 8.0e-29 131.0 175 49.7
Sabra02G0050800 Salix brachista HOM05D006901 ORTHO05D008582 1.0e-28 130.6 184 48.9
Potri.005G198100 Populus trichocarpa HOM05D006901 ORTHO05D008582 1.4e-28 130.2 184 47.3
RcHm_v2.0_Chr6g0273991 Rosa chinensis HOM05D006901 ORTHO05D008582 1.4e-28 130.2 91 75.8
FAN27G3188 Fragaria x ananassa HOM05D006901 ORTHO05D008582 1.8e-28 129.8 131 59.5
CARHR291060 Cardamine hirsuta HOM05D006901 ORTHO05D008582 2.3e-28 129.4 126 59.5
Sp5g26760 Schrenkiella parvula HOM05D006901 ORTHO05D008582 2.3e-28 129.4 125 63.2
CsaV3_6G004930 Cucumis sativus L. HOM05D006901 ORTHO05D008582 3.0e-28 129.0 109 67.9
Thhalv10019220m.g Eutrema salsugineum HOM05D006901 ORTHO05D008582 3.0e-28 129.0 140 57.9
PSO675G2506 Papaver somniferum HOM05D006901 ORTHO05D008582 4.0e-28 128.6 160 51.2
Nn5g28858 Nelumbo nucifera HOM05D006901 ORTHO05D008582 5.2e-28 128.3 139 58.3
Sabra05G0150900 Salix brachista HOM05D006901 ORTHO05D008582 5.2e-28 128.3 181 47.5
A07p37880 Brassica napus HOM05D006901 ORTHO05D008582 6.8e-28 127.9 158 51.3
BraA07t31353Z Brassica rapa HOM05D006901 ORTHO05D008582 6.8e-28 127.9 158 51.3
Ciclev10002626m.g Citrus clementina HOM05D006901 ORTHO05D008582 1.2e-27 127.1 185 46.5
Rhsim06G0092600 Rhododendron simsii HOM05D006901 ORTHO05D008582 1.2e-27 127.1 112 65.2
CAN.G1183.19 Capsicum annuum HOM05D006901 ORTHO05D008582 1.5e-27 126.7 165 48.5
Cc10_g06470 Coffea canephora HOM05D006901 ORTHO05D008582 1.5e-27 126.7 167 48.5
Solyc04g072038.1 Solanum lycopersicum HOM05D006901 ORTHO05D008582 1.5e-27 126.7 165 46.7
PGSC0003DMG400025056 Solanum tuberosum HOM05D006901 ORTHO05D008582 1.5e-27 126.7 165 46.7
MSTRG.22112 Avicennia marina HOM05D006901 ORTHO05D008582 2.0e-27 126.3 138 53.6
MELO3C019969.2 Cucumis melo HOM05D006901 ORTHO05D008582 2.0e-27 126.3 111 66.7
GSVIVG01013704001 Vitis vinifera HOM05D006901 ORTHO05D008582 2.0e-27 126.3 125 61.6
Carub.0002s1849 Capsella rubella HOM05D006901 ORTHO05D008582 2.6e-27 125.9 125 61.6
CSS0011226 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 3.4e-27 125.6 171 47.4
CSS0025966 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 3.4e-27 125.6 171 47.4
BcaC08g46599 Brassica carinata HOM05D006901 ORTHO05D008582 4.4e-27 125.2 158 50.6
C06p45780 Brassica napus HOM05D006901 ORTHO05D008582 4.4e-27 125.2 158 50.6
EL10Ac1g01620 Beta vulgaris HOM05D006901 ORTHO05D008582 5.7e-27 124.8 173 52.6
Sopen04g028100 Solanum pennellii HOM05D006901 ORTHO05D008582 5.7e-27 124.8 165 46.1
Lsat_1_v5_gn_1_5120 Lactuca sativa HOM05D006901 ORTHO05D008582 7.5e-27 124.4 158 53.2
EL10Ac1g01617 Beta vulgaris HOM05D006901 ORTHO05D008582 9.8e-27 124.0 137 58.4
EL10Ac4g07716 Beta vulgaris HOM05D006901 ORTHO05D008582 9.8e-27 124.0 137 56.9
PSO541G2877 Papaver somniferum HOM05D006901 ORTHO05D008582 9.8e-27 124.0 160 50.6
BolC6t39630H Brassica oleracea HOM05D006901 ORTHO05D008582 1.3e-26 123.6 158 50.0
Eucgr.F02679 Eucalyptus grandis HOM05D006901 ORTHO05D008582 1.3e-26 123.6 86 76.7
HanXRQChr02g0041271 Helianthus annuus HOM05D006901 ORTHO05D008582 1.3e-26 123.6 162 51.9
Oeu017620.1 Olea europaea HOM05D006901 ORTHO05D008582 1.3e-26 123.6 115 58.3
Nn6g32189 Nelumbo nucifera HOM05D006901 ORTHO05D008582 2.2e-26 122.9 180 46.7
AT1G71730 Arabidopsis thaliana HOM05D006901 ORTHO05D008582 2.8e-26 122.5 103 66.0
SGA_v2.0_scaffold82G26198 Striga asiatica HOM05D006901 ORTHO05D008582 3.7e-26 122.1 159 49.1
unitig_32.g11111 Utricularia gibba HOM05D006901 ORTHO05D008582 4.8e-26 121.7 90 72.2
SEGI_14424 Sequoiadendron giganteum HOM05D006901 ORTHO05D008582 6.3e-26 121.3 96 68.8
Hma1.2p1_0678F.1_g202120 Hydrangea macrophylla HOM05D006901 ORTHO05D008582 1.1e-25 120.6 136 50.0
Lj7E386T0 Lonicera japonica HOM05D006901 ORTHO05D008582 1.1e-25 120.6 96 69.8
ATR1120G022 Amborella trichopoda HOM05D006901 ORTHO05D008582 1.8e-25 119.8 81 79.0
SalBow8G2041 Salvia bowleyana HOM05D006901 ORTHO05D008582 1.8e-25 119.8 135 51.9
ECA247G1717 Erigeron canadensis HOM05D006901 ORTHO05D008582 2.4e-25 119.4 86 69.8
Pp3c17_20520 Physcomitrium patens HOM05D006901 ORTHO05D008582 9.1e-25 117.5 103 64.1
Peaxi162Scf00360g00917 Petunia axillaris HOM05D006901 ORTHO05D008582 7.7e-24 114.4 162 45.1
AagrBONN_evm.TU.Sc2ySwM_228.5132 Anthoceros agrestis HOM05D006901 ORTHO05D008582 2.9e-23 112.5 95 62.1
Zm00001eb346910 Zea mays HOM05D006901 ORTHO05D008582 5.5e-22 108.2 90 64.4
Os05g0182000 Oryza sativa ssp. japonica HOM05D006901 ORTHO05D008582 2.1e-21 106.3 83 67.5
CSS0012150 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 6.1e-21 104.8 155 45.2
SMO351G0406 Selaginella moellendorffii HOM05D006901 ORTHO05D008582 1.5e-19 100.1 83 62.7
DCAR_001194 Daucus carota HOM05D006901 ORTHO05D008582 8.3e-18 94.4 65 75.4
CBR_g54341 Chara braunii HOM05D006901 ORTHO05D008582 1.6e-16 90.1 82 58.5
MCO05G280 Micromonas commoda HOM05D006901 ORTHO05D008582 1.7e-15 86.7 89 50.6
CSS0007119 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 4.3e-14 82.0 116 43.1
Cre03.g176500 Chlamydomonas reinhardtii HOM05D006901 ORTHO05D008582 6.1e-13 78.2 87 49.4
CSS0023453 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 1.5e-11 73.6 97 47.4
Ah.08g214420 Amaranthus hybridus HOM05D006901 ORTHO05D008582 1.2e-08 63.9 63 54.0


User provided reference genes

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