Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0019856 Lotus japonicus HOM05D007008 ORTHO05D008622 1.1e-53 213.0 104 100.0
Phvul.001G040900 Phaseolus vulgaris HOM05D007008 ORTHO05D008622 6.9e-48 193.7 101 92.1
Glyma.17G224100 Glycine max HOM05D007008 ORTHO05D008622 1.5e-47 192.6 101 91.1
Glyma.14G101000 Glycine max HOM05D007008 ORTHO05D008622 2.0e-47 192.2 101 92.1
Lalb_Chr22g0361631 Lupinus albus HOM05D007008 ORTHO05D008622 4.4e-47 191.0 102 89.2
arahy.Tifrunner.gnm1.ann1.ENRJ0V Arachis hypogaea HOM05D007008 ORTHO05D008622 1.9e-45 185.7 101 87.1
CANSAT25G2981 Cannabis sativa HOM05D007008 ORTHO05D008622 1.9e-45 185.7 101 87.1
Ciclev10009999m.g Citrus clementina HOM05D007008 ORTHO05D008622 5.4e-45 184.1 101 87.1
arahy.Tifrunner.gnm1.ann1.K1H867 Arachis hypogaea HOM05D007008 ORTHO05D008622 9.3e-45 183.3 102 83.3
CiPaw.08G005100 Carya illinoinensis HOM05D007008 ORTHO05D008622 1.2e-44 183.0 101 87.1
Rhsim02G0211800 Rhododendron simsii HOM05D007008 ORTHO05D008622 1.6e-44 182.6 101 85.1
MSTRG.13965 Avicennia marina HOM05D007008 ORTHO05D008622 2.7e-44 181.8 102 85.3
CAN.G906.10 Capsicum annuum HOM05D007008 ORTHO05D008622 3.5e-44 181.4 99 87.9
Gohir.D06G104200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 3.5e-44 181.4 101 83.2
TWI34G0293 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 3.5e-44 181.4 101 86.1
FAN15G2831 Fragaria x ananassa HOM05D000756 ORTHO05D008622 4.6e-44 181.0 101 85.1
FAN27G1693 Fragaria x ananassa HOM05D007008 ORTHO05D008622 4.6e-44 181.0 101 85.1
QL02p018585 Quercus lobata HOM05D007008 ORTHO05D008622 4.6e-44 181.0 100 85.0
Manes.16G130900 Manihot esculenta HOM05D007008 ORTHO05D008622 6.0e-44 180.6 101 85.1
Glyma.06G060700 Glycine max HOM05D007008 ORTHO05D008622 7.9e-44 180.3 101 88.1
Gohir.A06G102300 Gossypium hirsutum HOM05D007008 ORTHO05D008622 7.9e-44 180.3 101 83.2
Thecc.09G014400 Theobroma cacao HOM05D007008 ORTHO05D008622 7.9e-44 180.3 101 84.2
FvH4_2g41220 Fragaria vesca HOM05D007008 ORTHO05D008622 1.0e-43 179.9 101 84.2
MD15G1042200 Malus domestica HOM05D007008 ORTHO05D008622 1.0e-43 179.9 101 84.2
Manes.03G007600 Manihot esculenta HOM05D007008 ORTHO05D008622 1.0e-43 179.9 101 85.1
Nn2g14020 Nelumbo nucifera HOM05D007008 ORTHO05D008622 1.3e-43 179.5 99 85.9
RcHm_v2.0_Chr6g0299291 Rosa chinensis HOM05D007008 ORTHO05D008622 1.3e-43 179.5 101 84.2
CDE05G1515 Ceratophyllum demersum HOM05D007008 ORTHO05D008622 1.7e-43 179.1 99 85.9
SGA_v2.0_scaffold169G38605 Striga asiatica HOM05D007008 ORTHO05D008622 1.7e-43 179.1 104 80.8
Nn8g40044 Nelumbo nucifera HOM05D007008 ORTHO05D008622 2.3e-43 178.7 99 85.9
Solyc08g006700.3 Solanum lycopersicum HOM05D007008 ORTHO05D008622 2.3e-43 178.7 99 85.9
PGSC0003DMG400026283 Solanum tuberosum HOM05D007008 ORTHO05D008622 2.3e-43 178.7 99 85.9
MD08G1054800 Malus domestica HOM05D007008 ORTHO05D008622 3.0e-43 178.3 101 83.2
Sed0013935 Sechium edule HOM05D007008 ORTHO05D008622 3.0e-43 178.3 104 78.8
ECA240G3080 Erigeron canadensis HOM05D007008 ORTHO05D008622 3.9e-43 177.9 104 81.7
Oeu048545.1 Olea europaea HOM05D007008 ORTHO05D008622 3.9e-43 177.9 104 82.7
SGA_v2.0_scaffold4G02166 Striga asiatica HOM05D007008 ORTHO05D008622 5.1e-43 177.6 102 82.4
TWI32G0141 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 5.1e-43 177.6 101 83.2
Prupe.1G395400 Prunus persica HOM05D007008 ORTHO05D008622 6.6e-43 177.2 101 83.2
Duzib187G1435 Durio zibethinus HOM05D007008 ORTHO05D008622 8.7e-43 176.8 101 81.2
Glyma.04G060200 Glycine max HOM05D007008 ORTHO05D008622 8.7e-43 176.8 98 87.8
HanXRQChr03g0081451 Helianthus annuus HOM05D007008 ORTHO05D008622 1.1e-42 176.4 104 78.8
Duzib168G0569 Durio zibethinus HOM05D007008 ORTHO05D008622 1.9e-42 175.6 101 81.2
Eucgr.C04041 Eucalyptus grandis HOM05D007008 ORTHO05D008622 1.9e-42 175.6 101 80.2
Duzib150G0558 Durio zibethinus HOM05D007008 ORTHO05D008622 2.5e-42 175.3 101 80.2
Atru.chr7.2552 Acer truncatum HOM05D007008 ORTHO05D008622 3.3e-42 174.9 101 82.2
TPR.G38860 Trifolium pratense HOM05D007008 ORTHO05D008622 3.3e-42 174.9 104 77.9
Migut.A00362 Erythranthe guttata HOM05D007008 ORTHO05D008622 4.3e-42 174.5 102 81.4
Oeu006861.2 Olea europaea HOM05D007008 ORTHO05D008622 5.6e-42 174.1 102 81.4
Hund02976 Selenicereus undatus HOM05D007008 ORTHO05D008622 7.3e-42 173.7 102 79.4
THA.LOC104799029 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 9.6e-42 173.3 101 80.2
THA.LOC104824959 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 9.6e-42 173.3 101 79.2
Medtr1g014230 Medicago truncatula HOM05D007008 ORTHO05D008622 1.6e-41 172.6 105 79.0
Rhsim02G0210500 Rhododendron simsii HOM05D007008 ORTHO05D008622 1.6e-41 172.6 110 77.3
Potri.018G017300 Populus trichocarpa HOM05D007008 ORTHO05D008622 2.1e-41 172.2 101 81.2
Gohir.A07G033600 Gossypium hirsutum HOM05D007008 ORTHO05D008622 2.8e-41 171.8 101 81.2
Gohir.D07G037200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 2.8e-41 171.8 101 81.2
Gorai.001G038800 Gossypium raimondii HOM05D007008 ORTHO05D008622 2.8e-41 171.8 101 81.2
MSTRG.11785 Avicennia marina HOM05D007008 ORTHO05D008622 3.6e-41 171.4 102 80.4
Potri.006G265600 Populus trichocarpa HOM05D007008 ORTHO05D008622 3.6e-41 171.4 101 81.2
Aqoxy7G03348 Aquilegia oxysepala HOM05D007008 ORTHO05D008622 4.8e-41 171.0 103 78.6
CARHR202480 Cardamine hirsuta HOM05D007008 ORTHO05D008622 8.1e-41 170.2 100 81.0
AUR62024793 Chenopodium quinoa HOM05D007008 ORTHO05D008622 1.4e-40 169.5 102 78.4
TAR626G0196 Trochodendron aralioides HOM05D007008 ORTHO05D008622 1.4e-40 169.5 102 78.4
Sabra18G0020700 Salix brachista HOM05D007008 ORTHO05D008622 1.8e-40 169.1 105 80.0
Sed0015687 Sechium edule HOM05D007008 ORTHO05D008622 1.8e-40 169.1 101 77.2
HanXRQChr17g0538991 Helianthus annuus HOM05D007008 ORTHO05D008622 2.4e-40 168.7 102 76.5
PSO170G4073 Papaver somniferum HOM05D007008 ORTHO05D008622 2.4e-40 168.7 100 79.0
PSO357G0206 Papaver somniferum HOM05D007008 ORTHO05D008622 2.4e-40 168.7 100 79.0
TAR383G0422 Trochodendron aralioides HOM05D007008 ORTHO05D008622 3.1e-40 168.3 99 76.8
Carub.0006s0932 Capsella rubella HOM05D007008 ORTHO05D008622 4.0e-40 167.9 101 76.2
A02p00680 Brassica napus HOM05D000653 ORTHO05D002177 5.3e-40 167.5 101 76.2
C02p04680 Brassica napus HOM05D000653 ORTHO05D002177 5.3e-40 167.5 101 76.2
BolC2t06426H Brassica oleracea HOM05D000238 ORTHO05D001043 5.3e-40 167.5 101 76.2
BraA02t05052Z Brassica rapa HOM05D000238 ORTHO05D001043 5.3e-40 167.5 101 76.2
Thhalv10016011m.g Eutrema salsugineum HOM05D007008 ORTHO05D008622 6.9e-40 167.2 101 77.2
Eucgr.L00629 Eucalyptus grandis HOM05D007008 ORTHO05D008622 1.2e-39 166.4 112 72.3
Sopen08g002640 Solanum pennellii HOM05D007008 ORTHO05D008622 1.5e-39 166.0 92 85.9
Sabra06G0208200 Salix brachista HOM05D007008 ORTHO05D008622 2.0e-39 165.6 100 78.0
AT5G10810 Arabidopsis thaliana HOM05D007008 ORTHO05D008622 2.6e-39 165.2 101 75.2
BcaNung06639 Brassica carinata HOM05D000653 ORTHO05D008622 3.4e-39 164.9 101 74.3
Aa31LG3G16290 Aethionema arabicum HOM05D007008 ORTHO05D008622 4.5e-39 164.5 101 73.3
AL6G21390 Arabidopsis lyrata HOM05D007008 ORTHO05D008622 4.5e-39 164.5 101 75.2
EL10Ac2g02486 Beta vulgaris HOM05D007008 ORTHO05D008622 4.5e-39 164.5 102 75.5
BcaC03g13334 Brassica carinata HOM05D000653 ORTHO05D002177 4.5e-39 164.5 101 75.2
BolC9t59417H Brassica oleracea HOM05D000238 ORTHO05D001043 7.6e-39 163.7 100 75.0
BcaB08g37301 Brassica carinata HOM05D000238 ORTHO05D008622 1.3e-38 162.9 100 75.0
C09p65940 Brassica napus HOM05D007008 ORTHO05D008622 2.2e-38 162.2 105 72.4
BraA10t44733Z Brassica rapa HOM05D000238 ORTHO05D002998 2.2e-38 162.2 100 75.0
Zm00001eb078360 Zea mays HOM05D007008 ORTHO05D008622 3.8e-38 161.4 98 72.4
PGR044G1005 Punica granatum HOM05D007008 ORTHO05D008622 6.4e-38 160.6 99 75.8
Zm00001eb184500 Zea mays HOM05D007008 ORTHO05D008622 6.4e-38 160.6 98 75.5
GSVIVG01035984001 Vitis vinifera HOM05D007008 ORTHO05D008622 8.4e-38 160.2 94 78.7
Cc11_g00350 Coffea canephora HOM05D007008 ORTHO05D008622 3.2e-37 158.3 94 79.8
Lsat_1_v5_gn_5_62001 Lactuca sativa HOM05D007008 ORTHO05D008622 1.2e-36 156.4 92 79.3
Mapoly0112s0015 Marchantia polymorpha HOM05D007008 ORTHO05D008622 2.7e-36 155.2 98 70.4
SMO367G1120 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 1.9e-34 149.1 100 65.0
CBR_g34568 Chara braunii HOM05D007008 ORTHO05D008622 6.2e-33 144.1 92 69.6
AagrBONN_evm.TU.Sc2ySwM_344.3123 Anthoceros agrestis HOM05D007008 ORTHO05D008622 1.8e-32 142.5 99 66.7
CiPaw.07G231200 Carya illinoinensis HOM05D007008 ORTHO05D008622 3.4e-31 138.3 71 90.1
Pp3c15_19100 Physcomitrium patens HOM05D007008 ORTHO05D008622 1.3e-30 136.3 98 62.2
Pp3c9_4080 Physcomitrium patens HOM05D007008 ORTHO05D008622 1.3e-30 136.3 98 62.2
MELO3C030305.2 Cucumis melo HOM05D007008 ORTHO05D008622 2.9e-30 135.2 72 87.5
SMO197G0113 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 2.9e-30 135.2 102 54.9
arahy.Tifrunner.gnm1.ann1.T6XV8N Arachis hypogaea HOM05D007008 ORTHO05D008622 4.9e-30 134.4 82 75.6
MCO13G493 Micromonas commoda HOM05D007008 ORTHO05D008622 1.4e-29 132.9 101 51.5
Gorai.010G119400 Gossypium raimondii HOM05D007008 ORTHO05D008622 3.2e-29 131.7 72 83.3
CSS0004043 Camellia sinensis var. sinensis HOM05D007008 ORTHO05D008622 5.5e-29 131.0 72 86.1
Ah.12g060690 Amaranthus hybridus HOM05D007008 ORTHO05D008622 7.1e-29 130.6 72 84.7
Psat6g026400 Pisum sativum HOM05D007008 ORTHO05D008622 1.2e-28 129.8 73 82.2
AUR62032427 Chenopodium quinoa HOM05D007008 ORTHO05D008622 1.0e-27 126.7 72 81.9
Hund25613 Selenicereus undatus HOM05D007008 ORTHO05D008622 1.0e-27 126.7 73 84.9
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 1.3e-27 126.3 71 81.7
Sp6g32640 Schrenkiella parvula HOM05D000653 ORTHO05D002177 5.1e-27 124.4 72 81.9
Os04g0499200 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 1.6e-25 119.4 76 67.1
SEGI_13302 Sequoiadendron giganteum HOM05D007008 ORTHO05D008622 2.1e-25 119.0 77 68.8
HPP92_017465 Vanilla planifolia HOM05D007008 ORTHO05D008622 2.1e-25 119.0 73 72.6
PRCOL_00001314 Prasinoderma coloniale HOM05D007008 ORTHO05D008622 8.2e-25 117.1 99 49.5
Thecc.02G190100 Theobroma cacao HOM05D007008 ORTHO05D008622 3.0e-19 98.6 103 52.4
Thecc.02G024500 Theobroma cacao HOM05D007008 ORTHO05D008622 1.9e-18 95.9 64 71.9
Thecc.01G194900 Theobroma cacao HOM05D007008 ORTHO05D008622 3.7e-17 91.7 64 71.9
Os02g0611450 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 4.6e-12 74.7 54 57.4
Thecc.10G152400 Theobroma cacao HOM05D007008 ORTHO05D008622 2.4e-08 62.4 40 70.0
Thecc.05G179000 Theobroma cacao HOM05D000477 ORTHO05D000338 9.1e-08 60.5 68 47.1
CsaV3_2G032520 Cucumis sativus L. HOM05D000653 ORTHO05D002177 1.5e-07 59.7 32 84.4
MBI15_g08395_MAGBIO Magnolia biondii HOM05D007008 ORTHO05D008622 1.3e-06 56.6 32 81.2
arahy.Tifrunner.gnm1.ann1.6H1017 Arachis hypogaea HOM05D007008 ORTHO05D008622 3.8e-06 55.1 79 40.5


User provided reference genes

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