Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 7.1e-88 327.4 186 100.0
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 3.0e-62 242.3 189 74.6
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 2.8e-60 235.7 189 72.5
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 1.8e-59 233.0 189 72.5
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 1.5e-58 229.9 189 72.0
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 1.3e-57 226.9 194 69.6
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 5.0e-57 224.9 189 69.3
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 7.9e-55 217.6 190 70.0
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 1.4e-54 216.9 199 70.4
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 1.8e-54 216.5 191 69.6
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 2.3e-54 216.1 199 69.8
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 5.7e-53 211.5 190 67.9
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 3.1e-51 205.7 189 66.1
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 7.7e-50 201.1 191 70.2
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 2.9e-49 199.1 190 65.3
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 3.8e-49 198.7 190 71.1
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 5.0e-49 198.4 190 68.9
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 4.2e-48 195.3 199 65.3
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 7.2e-48 194.5 192 66.1
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 1.2e-47 193.7 186 69.4
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 4.7e-47 191.8 199 66.3
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 5.2e-46 188.3 199 61.3
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 8.8e-46 187.6 194 68.0
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 4.4e-45 185.3 187 67.4
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 7.4e-45 184.5 192 64.6
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 1.3e-44 183.7 195 65.6
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 3.7e-44 182.2 187 59.4
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 6.3e-44 181.4 199 65.3
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.4e-43 180.3 190 65.8
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 1.8e-43 179.9 188 62.8
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 2.4e-43 179.5 188 64.4
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 4.1e-43 178.7 196 57.1
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 4.1e-43 178.7 199 65.3
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 5.3e-43 178.3 195 64.1
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 7.0e-43 177.9 201 65.2
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 1.2e-42 177.2 192 63.5
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 2.0e-42 176.4 190 65.8
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 2.0e-42 176.4 195 64.1
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 2.0e-42 176.4 183 62.3
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 2.6e-42 176.0 185 58.4
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 3.5e-42 175.6 188 66.0
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 3.5e-42 175.6 158 66.5
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 4.5e-42 175.3 190 65.8
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 4.5e-42 175.3 191 63.9
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 4.5e-42 175.3 193 64.2
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 5.9e-42 174.9 186 64.5
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 5.9e-42 174.9 191 66.0
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 5.9e-42 174.9 188 63.3
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 5.9e-42 174.9 183 63.9
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 7.7e-42 174.5 194 63.4
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 1.0e-41 174.1 175 66.3
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 1.0e-41 174.1 200 63.5
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 1.3e-41 173.7 190 65.3
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 1.3e-41 173.7 199 62.3
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.7e-41 173.3 190 63.7
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 1.7e-41 173.3 183 62.3
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 1.7e-41 173.3 190 62.6
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 2.2e-41 172.9 183 63.9
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 2.2e-41 172.9 190 63.2
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 2.9e-41 172.6 186 64.5
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 2.9e-41 172.6 190 63.2
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 2.9e-41 172.6 188 59.0
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 3.8e-41 172.2 186 62.9
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 3.8e-41 172.2 194 64.4
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 5.0e-41 171.8 189 59.3
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 5.0e-41 171.8 186 63.4
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 6.5e-41 171.4 187 63.6
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 8.5e-41 171.0 186 62.4
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 1.1e-40 170.6 191 63.9
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 1.5e-40 170.2 188 56.9
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 1.5e-40 170.2 190 63.2
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 1.9e-40 169.9 186 60.8
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 1.9e-40 169.9 185 62.7
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 2.5e-40 169.5 191 66.5
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 3.2e-40 169.1 186 63.4
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 5.5e-40 168.3 186 63.4
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 5.5e-40 168.3 156 66.0
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 7.2e-40 167.9 186 62.9
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 7.2e-40 167.9 183 63.9
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 7.2e-40 167.9 189 60.8
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 1.2e-39 167.2 190 61.6
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.6e-39 166.8 186 62.9
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 1.6e-39 166.8 183 60.7
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 1.6e-39 166.8 189 59.8
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 2.1e-39 166.4 188 61.2
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 2.7e-39 166.0 188 54.8
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 3.6e-39 165.6 186 62.9
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 3.6e-39 165.6 186 62.9
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 4.7e-39 165.2 188 61.2
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 4.7e-39 165.2 189 60.8
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 1.0e-38 164.1 155 68.4
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 1.4e-38 163.7 186 65.1
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 1.4e-38 163.7 188 55.9
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 1.8e-38 163.3 190 60.5
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 1.8e-38 163.3 142 73.9
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 1.8e-38 163.3 194 59.8
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 2.3e-38 162.9 190 60.5
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 2.3e-38 162.9 186 57.0
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 5.2e-38 161.8 187 62.0
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.2e-37 160.6 143 70.6
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 1.2e-37 160.6 192 52.6
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 2.6e-37 159.5 201 60.2
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 4.4e-37 158.7 156 66.0
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 5.7e-37 158.3 200 62.0
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 7.5e-37 157.9 220 53.6
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 9.7e-37 157.5 191 59.2
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 9.7e-37 157.5 186 61.8
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 9.7e-37 157.5 183 62.8
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 1.3e-36 157.1 188 61.2
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 1.7e-36 156.8 186 60.8
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 4.8e-36 155.2 186 62.4
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 4.1e-35 152.1 200 55.0
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 1.6e-34 150.2 185 52.4
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 1.6e-34 150.2 86 87.2
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 2.7e-34 149.4 176 60.2
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 3.5e-34 149.1 97 78.4
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 4.5e-34 148.7 191 57.1
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 1.7e-33 146.7 189 55.6
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 2.9e-33 146.0 82 87.8
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 9.4e-32 141.0 173 58.4
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 1.2e-31 140.6 145 57.9
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 3.6e-31 139.0 165 57.6
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 1.0e-30 137.5 75 90.7
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 4.0e-30 135.6 213 43.7
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 6.3e-28 128.3 174 56.9
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 1.4e-27 127.1 70 87.1
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 9.1e-27 124.4 69 82.6
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 1.4e-22 110.5 86 62.8
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 1.8e-22 110.2 118 66.1
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 6.8e-22 108.2 93 57.0
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 2.6e-21 106.3 145 56.6
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 1.3e-20 104.0 68 75.0
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 1.7e-20 103.6 184 45.7
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 2.8e-20 102.8 73 74.0
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 3.7e-20 102.4 106 54.7
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 1.0e-17 94.4 84 52.4
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 2.3e-17 93.2 147 40.1
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 2.9e-17 92.8 171 52.0
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 3.9e-17 92.4 186 39.2
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 8.0e-15 84.7 122 56.6
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 2.3e-14 83.2 153 49.0
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 4.9e-12 75.5 76 73.7
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 4.6e-10 68.9 67 53.7
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 2.8e-07 59.7 39 61.5


User provided reference genes

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