Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 0.0e+00 1716.8 834 100.0
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1545.8 829 89.3
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1536.5 829 88.9
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 0.0e+00 1534.6 836 88.4
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1530.4 829 87.9
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 0.0e+00 1528.5 829 88.2
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 0.0e+00 1516.9 835 86.9
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 0.0e+00 1508.4 836 87.3
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1506.9 832 86.2
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1501.1 832 86.3
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 0.0e+00 1495.3 828 85.4
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 0.0e+00 1389.4 754 88.2
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1344.7 834 78.2
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 0.0e+00 1320.8 833 77.0
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 0.0e+00 1319.3 834 76.5
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 0.0e+00 1309.3 825 76.1
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 0.0e+00 1307.0 833 75.4
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 0.0e+00 1303.9 833 74.7
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 0.0e+00 1303.1 831 75.6
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 0.0e+00 1301.2 837 74.2
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 0.0e+00 1301.2 833 74.7
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 0.0e+00 1299.6 833 75.2
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 0.0e+00 1295.8 833 74.3
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 0.0e+00 1293.5 831 75.9
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1291.9 832 74.2
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 0.0e+00 1287.3 832 74.3
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1285.8 834 74.1
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 0.0e+00 1285.8 838 73.3
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1285.0 832 74.0
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 0.0e+00 1284.6 832 73.7
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 0.0e+00 1280.8 836 75.0
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 0.0e+00 1277.3 963 67.0
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 0.0e+00 1275.0 839 73.9
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1275.0 830 74.5
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 0.0e+00 1273.1 831 73.2
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 0.0e+00 1270.8 830 74.0
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1268.4 830 73.9
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1268.4 830 73.9
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1266.1 832 73.7
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1265.0 836 73.4
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1264.2 830 73.7
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 0.0e+00 1262.7 834 73.5
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 0.0e+00 1260.4 835 72.6
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 0.0e+00 1258.8 836 72.7
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1257.7 836 73.1
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 0.0e+00 1257.3 834 73.6
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 0.0e+00 1256.9 833 72.1
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 0.0e+00 1256.1 838 72.3
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 0.0e+00 1255.0 836 73.0
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1253.4 835 72.9
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 0.0e+00 1251.1 836 72.2
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1250.7 832 72.7
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 0.0e+00 1248.4 831 71.7
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 0.0e+00 1248.4 834 73.5
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 0.0e+00 1248.0 833 72.1
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 0.0e+00 1246.5 832 71.4
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 0.0e+00 1245.7 830 71.8
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 0.0e+00 1244.6 833 72.4
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1244.2 831 71.7
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 0.0e+00 1243.0 826 72.2
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 0.0e+00 1241.5 873 70.0
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 0.0e+00 1227.6 832 70.7
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1227.2 830 71.3
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1223.8 834 71.2
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1221.5 831 72.9
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 0.0e+00 1221.1 839 70.2
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 0.0e+00 1212.2 840 70.1
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 0.0e+00 1208.0 832 70.6
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 0.0e+00 1204.1 834 68.8
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1202.6 853 68.6
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1192.2 848 68.9
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 0.0e+00 1179.9 832 68.5
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1176.4 789 72.0
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1176.0 855 67.5
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 0.0e+00 1170.6 838 67.2
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1165.2 830 67.6
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 0.0e+00 1163.3 830 67.5
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1162.9 833 67.5
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1162.5 831 67.1
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 0.0e+00 1162.5 838 66.6
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1161.7 831 67.1
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 0.0e+00 1160.2 838 66.8
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 0.0e+00 1158.3 832 67.1
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 0.0e+00 1153.3 834 66.1
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 0.0e+00 1152.1 840 66.5
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 0.0e+00 1149.8 842 67.0
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1147.9 833 66.9
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 0.0e+00 1140.6 836 66.0
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 0.0e+00 1139.0 839 66.3
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 0.0e+00 1135.6 826 64.6
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 0.0e+00 1133.6 938 62.0
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 0.0e+00 1132.1 840 66.2
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 0.0e+00 1126.3 829 63.6
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 0.0e+00 1125.2 734 73.3
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 0.0e+00 1101.7 836 63.4
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 2.5e-310 1068.5 839 62.6
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 1.5e-291 1006.1 670 71.9
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 1.2e-288 996.5 830 59.3
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 5.7e-278 961.1 828 59.4
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 5.5e-273 944.5 645 71.6
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.9e-265 919.5 582 75.9
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 4.5e-251 871.7 884 50.0
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 1.1e-244 850.5 855 51.0
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 2.3e-242 842.8 867 49.1
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 6.4e-213 745.0 830 49.3
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 2.0e-174 617.1 465 65.8
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 6.3e-168 595.5 400 70.5
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 1.2e-142 511.5 400 62.0
HPP92_023440 Vanilla planifolia HOM05D004962 ORTHO05D006249 3.8e-133 479.9 355 62.5
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 9.5e-132 475.3 359 62.7
Actinidia16688 Actinidia chinensis HOM05D004962 ORTHO05D006249 2.7e-118 430.6 263 75.7
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 2.9e-104 384.0 481 47.2
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 1.2e-102 378.6 826 34.6
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 2.5e-100 370.9 298 65.4
MCO16G399 Micromonas commoda HOM05D004962 ORTHO05D006249 4.7e-99 366.7 1009 28.2
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 5.2e-98 363.2 235 75.3
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 3.8e-96 357.1 868 31.5
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 4.2e-95 353.6 313 54.3
Cre10.g462750 Chlamydomonas reinhardtii HOM05D004962 ORTHO05D006249 1.9e-92 344.7 1131 26.4
SEGI_12856 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 4.4e-89 333.6 267 62.2
TAR371G1111 Trochodendron aralioides HOM05D004962 ORTHO05D006249 5.4e-87 326.6 195 75.4
MD07G1141900 Malus domestica HOM05D004962 ORTHO05D006249 2.8e-83 314.3 192 79.2
Dinv31590 Davidia involucrata HOM05D004962 ORTHO05D006249 1.5e-81 308.5 193 74.6
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 1.1e-76 292.4 240 64.2
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 1.3e-67 262.3 562 32.9
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 4.1e-50 204.1 195 50.8
SEGI_09159 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.0e-48 199.5 154 62.3
A08p03840 Brassica napus HOM05D004962 ORTHO05D006249 1.4e-42 179.1 216 43.1
BraA08t32413Z Brassica rapa HOM05D004962 ORTHO05D006249 1.4e-42 179.1 216 43.1
PGSC0003DMG400024407 Solanum tuberosum HOM05D004962 ORTHO05D006249 3.2e-39 167.9 99 79.8
vmacro10603 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 1.0e-37 162.9 129 62.8
TAR371G0141 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.2e-36 159.5 97 76.3
Dinv31589 Davidia involucrata HOM05D004962 ORTHO05D006249 1.9e-31 142.1 96 69.8
PGSC0003DMG400031444 Solanum tuberosum HOM05D004962 ORTHO05D006249 9.4e-31 139.8 78 84.6
TPR.G18842 Trifolium pratense HOM05D004962 ORTHO05D006249 6.1e-30 137.1 75 89.3
TAR371G0959 Trochodendron aralioides HOM05D004962 ORTHO05D006249 7.0e-26 123.6 75 77.3
TAR371G1015 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.2e-22 112.8 64 81.2
C08p04020 Brassica napus HOM05D004962 ORTHO05D006249 3.6e-22 111.3 60 86.7
CBR_g37253 Chara braunii HOM05D004962 ORTHO05D000048 6.1e-22 110.5 184 39.1
SEGI_19116 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 8.8e-21 106.7 69 63.8
Actinidia16687 Actinidia chinensis HOM05D004962 ORTHO05D006249 6.3e-19 100.5 53 81.1
BolC8t47195H Brassica oleracea HOM05D004962 ORTHO05D006249 1.4e-18 99.4 94 48.9
A05p20570 Brassica napus HOM05D004962 ORTHO05D040710 9.2e-18 96.7 113 46.9
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 1.6e-17 95.9 59 69.5
BolC8t47194H Brassica oleracea HOM05D004962 ORTHO05D006249 8.6e-16 90.1 99 49.5
BraA05t20967Z Brassica rapa HOM05D004962 ORTHO05D040710 5.6e-15 87.4 109 43.1
BcaB02g11086 Brassica carinata HOM05D004962 ORTHO05D006249 8.0e-14 83.6 100 42.0
RcHm_v2.0_Chr7g0200531 Rosa chinensis HOM05D004962 ORTHO05D006249 2.4e-10 72.0 87 49.4
Sp1g36390 Schrenkiella parvula HOM05D004962 ORTHO05D006249 1.6e-09 69.3 106 37.7
AL8G40810 Arabidopsis lyrata HOM05D001610 ORTHO05D001585 8.6e-08 63.5 257 25.3
Ciclev10014731m.g Citrus clementina HOM05D001610 ORTHO05D001585 2.5e-07 62.0 200 23.5
COL.COLO4_29887 Corchorus olitorius HOM05D001610 ORTHO05D001585 2.5e-07 62.0 198 28.3
Lj4g0023649 Lotus japonicus HOM05D000464 ORTHO05D006292 2.5e-07 62.0 145 33.1
Actinidia11916 Actinidia chinensis HOM05D000464 ORTHO05D000408 5.6e-07 60.8 146 32.9
PRCOL_00000660 Prasinoderma coloniale HOM05D002634 ORTHO05D003100 1.6e-06 59.3 108 32.4
Mapoly0104s0042 Marchantia polymorpha HOM05D002634 ORTHO05D003100 2.8e-06 58.5 114 29.8
Psat6g019720 Pisum sativum HOM05D003913 ORTHO05D004803 2.8e-06 58.5 212 20.8
Sed0028141 Sechium edule HOM05D004768 ORTHO05D005812 3.6e-06 58.2 111 33.3
SMO118G0254 Selaginella moellendorffii HOM05D002634 ORTHO05D003100 3.6e-06 58.2 109 32.1
TPR.G14719 Trifolium pratense HOM05D005961 ORTHO05D007391 3.6e-06 58.2 133 30.1
Ah.08g218380 Amaranthus hybridus HOM05D000464 ORTHO05D006292 4.7e-06 57.8 144 31.2
AagrBONN_evm.TU.Sc2ySwM_117.1119 Anthoceros agrestis HOM05D002634 ORTHO05D003100 4.7e-06 57.8 108 31.5
CDE02G1419 Ceratophyllum demersum HOM05D002634 ORTHO05D003100 4.7e-06 57.8 106 30.2
Thhalv10014152m.g Eutrema salsugineum HOM05D005961 ORTHO05D007391 4.7e-06 57.8 90 37.8
PSO017G4890 Papaver somniferum HOM05D005401 ORTHO05D006582 4.7e-06 57.8 139 30.2
PSO170G5022 Papaver somniferum HOM05D005401 ORTHO05D006582 4.7e-06 57.8 139 30.2
Pp3c13_5760 Physcomitrium patens HOM05D002634 ORTHO05D003100 4.7e-06 57.8 117 29.1
SHI06205 Sapria himalayana HOM05D005323 ORTHO05D000023 4.7e-06 57.8 118 29.7
Sc16g0001440 Simmondsia chinensis HOM05D002634 ORTHO05D003100 4.7e-06 57.8 152 27.6
Hund05615 Selenicereus undatus HOM05D000464 ORTHO05D006292 6.2e-06 57.4 150 30.0
SMO367G0692 Selaginella moellendorffii HOM05D065085 ORTHO05D376097 8.0e-06 57.0 58 50.0


User provided reference genes

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