Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 4.0e-190 668.3 438 100.0
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 1.4e-110 404.1 474 56.5
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.7e-108 397.1 463 57.2
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 2.1e-106 390.2 450 62.4
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 2.0e-104 383.6 446 62.8
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 3.4e-104 382.9 449 56.3
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 1.9e-99 367.1 461 53.8
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 5.5e-99 365.5 451 53.4
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 2.8e-98 363.2 462 54.3
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 1.4e-97 360.9 433 56.8
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 1.8e-97 360.5 488 51.4
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 3.4e-96 356.3 306 69.3
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 7.5e-96 355.1 463 52.5
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 3.7e-95 352.8 461 54.2
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 1.4e-94 350.9 467 51.6
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 2.7e-93 346.7 452 51.3
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 3.5e-93 346.3 462 50.9
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 4.5e-93 345.9 468 49.8
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 2.3e-92 343.6 463 51.6
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.5e-91 340.9 469 49.5
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 4.3e-91 339.3 469 49.3
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 9.5e-91 338.2 474 50.2
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.0e-89 334.7 457 50.1
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.4e-89 334.3 437 50.8
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.4e-89 334.3 437 50.8
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 4.0e-89 332.8 537 45.3
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 5.2e-89 332.4 437 50.6
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 6.8e-89 332.0 452 50.4
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 7.5e-88 328.6 452 51.1
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 1.7e-87 327.4 460 49.6
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 3.7e-87 326.2 489 47.4
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 1.4e-86 324.3 445 49.4
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 3.2e-86 323.2 469 47.8
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 3.2e-86 323.2 469 47.8
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 3.2e-86 323.2 457 49.2
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 7.0e-86 322.0 298 64.4
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 1.2e-85 321.2 462 51.5
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 2.7e-85 320.1 447 48.5
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 4.6e-85 319.3 455 48.6
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 6.0e-85 318.9 465 53.1
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 1.0e-84 318.2 410 52.7
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 1.0e-84 318.2 475 48.8
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 1.7e-84 317.4 447 49.0
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 1.2e-82 311.2 488 45.3
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 2.8e-82 310.1 299 64.9
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 1.8e-81 307.4 484 47.1
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 1.5e-80 304.3 474 46.8
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 1.7e-79 300.8 475 45.3
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 2.2e-79 300.4 470 58.5
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 9.2e-78 295.0 454 47.8
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 1.2e-77 294.7 308 60.7
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 2.1e-77 293.9 462 45.9
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 2.7e-77 293.5 461 45.8
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 1.7e-76 290.8 440 46.8
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 3.0e-76 290.0 475 44.0
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 3.0e-76 290.0 304 57.9
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 5.1e-76 289.3 306 57.2
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 6.6e-76 288.9 475 47.6
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 8.6e-76 288.5 312 57.7
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 2.5e-75 287.0 307 57.3
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 3.3e-75 286.6 470 45.5
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 4.3e-75 286.2 454 47.1
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 7.3e-75 285.4 450 45.3
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 7.3e-75 285.4 304 57.2
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 7.3e-75 285.4 391 51.7
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 9.5e-75 285.0 304 56.9
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 1.6e-74 284.3 288 60.1
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 2.8e-74 283.5 450 46.0
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 1.2e-72 278.1 310 57.1
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 2.6e-72 276.9 315 56.5
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 7.6e-72 275.4 452 46.5
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 7.6e-72 275.4 472 44.1
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 2.2e-71 273.9 312 60.3
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 1.9e-70 270.8 464 48.5
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 2.4e-70 270.4 470 44.3
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 1.7e-68 264.2 312 55.4
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 1.1e-67 261.5 487 46.8
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 1.5e-67 261.2 264 60.2
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 3.3e-67 260.0 478 41.2
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 4.3e-67 259.6 505 40.8
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 7.3e-67 258.8 496 44.6
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 1.2e-66 258.1 479 43.2
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 1.6e-66 257.7 323 53.9
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 2.8e-66 256.9 298 54.7
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 3.6e-66 256.5 320 52.5
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 8.1e-66 255.4 312 54.8
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 5.2e-65 252.7 318 51.9
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 6.8e-65 252.3 500 41.2
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 8.9e-65 251.9 482 41.7
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 1.5e-64 251.1 460 42.8
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 2.9e-63 246.9 504 40.9
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 4.9e-63 246.1 488 40.4
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 1.1e-62 245.0 459 41.4
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 4.2e-62 243.0 481 43.9
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 4.2e-62 243.0 425 43.3
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 7.1e-62 242.3 483 42.4
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 9.3e-62 241.9 413 44.3
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 1.6e-61 241.1 277 57.8
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 1.9e-59 234.2 431 42.0
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 2.5e-59 233.8 476 42.6
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 3.3e-59 233.4 476 42.6
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 6.2e-58 229.2 316 50.6
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.8e-57 227.6 469 40.3
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 3.1e-57 226.9 321 50.2
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 3.1e-57 226.9 307 50.5
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 2.0e-56 224.2 492 41.1
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 2.9e-55 220.3 474 38.8
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 3.8e-55 219.9 439 44.2
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 6.4e-55 219.2 304 50.7
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.4e-54 218.0 356 47.5
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 1.2e-53 214.9 472 39.0
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 1.6e-53 214.5 314 48.1
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 3.5e-53 213.4 398 42.0
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 3.5e-53 213.4 263 52.1
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 6.0e-53 212.6 471 39.5
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 3.9e-52 209.9 311 48.9
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 1.8e-49 201.1 305 46.9
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 3.1e-49 200.3 361 42.7
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 4.5e-48 196.4 228 56.6
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 1.3e-44 184.9 278 46.8
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 3.0e-44 183.7 432 38.9
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 9.6e-43 178.7 264 47.7
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 1.2e-40 171.8 131 74.8
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 2.9e-39 167.2 296 44.3
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 6.5e-39 166.0 170 61.2
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 1.3e-36 158.3 295 42.4
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 6.7e-36 156.0 374 35.8
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 1.6e-34 151.4 232 46.1
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 1.2e-24 118.6 256 35.2
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.0e-20 105.5 93 68.8
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 4.8e-18 96.7 85 63.5
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 1.4e-17 95.1 445 32.8
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 1.8e-17 94.7 135 47.4
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 2.4e-17 94.4 74 73.0
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 3.4e-16 90.5 199 38.2
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 1.9e-14 84.7 286 29.0
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 4.2e-14 83.6 73 64.4
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.6e-13 81.6 61 70.5
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 1.4e-12 78.6 57 73.7
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 5.1e-12 76.6 57 71.9
Lsat_1_v5_gn_8_18301 Lactuca sativa HOM05D004847 ORTHO05D005856 1.1e-11 75.5 91 51.6
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 8.2e-10 69.3 55 70.9
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 8.2e-10 69.3 294 27.9
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 3.1e-09 67.4 69 53.6
SEGI_03169 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 1.6e-08 65.1 143 34.3
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.6e-08 64.3 51 66.7
BolC1t05697H Brassica oleracea HOM05D004847 ORTHO05D005856 1.7e-07 61.6 116 41.4
Gohir.A01G045000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.9e-07 60.8 51 62.7
Gohir.D04G107600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.9e-07 60.8 51 62.7
Gohir.D09G147300 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.9e-07 60.8 51 62.7
Gohir.D10G096100 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.9e-07 60.8 51 62.7
Gohir.A10G185000 Gossypium hirsutum HOM05D000639 ORTHO05D020118 3.8e-07 60.5 51 62.7
Gohir.D07G076600 Gossypium hirsutum HOM05D000639 ORTHO05D020118 6.5e-07 59.7 51 60.8
Gohir.D10G149400 Gossypium hirsutum HOM05D000639 ORTHO05D020118 8.5e-07 59.3 51 60.8


User provided reference genes

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