Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0018797 Lotus japonicus HOM05D004666 ORTHO05D005822 0.0e+00 1855.5 913 100.0
Lj5g0013478 Lotus japonicus HOM05D004666 ORTHO05D005822 0.0e+00 1265.0 1081 63.3
Ca_26672_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 0.0e+00 1113.2 1009 59.6
Ca_30723_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 0.0e+00 1113.2 1009 59.6
TPR.G35431 Trifolium pratense HOM05D004666 ORTHO05D005822 0.0e+00 1082.8 978 59.2
Glyma.10G068100 Glycine max HOM05D004666 ORTHO05D005822 3.9e-304 1048.1 1142 52.4
Medtr1g060580 Medicago truncatula HOM05D004666 ORTHO05D005822 7.6e-300 1033.9 1017 57.4
Phvul.011G176600 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 6.2e-286 987.6 1121 51.6
Phvul.007G229800 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 3.4e-284 981.9 1129 50.1
Psat6g082920 Pisum sativum HOM05D004666 ORTHO05D005822 2.1e-281 972.6 1007 53.5
Lalb_Chr02g0155381 Lupinus albus HOM05D004666 ORTHO05D005822 1.0e-280 970.3 1033 53.1
VMungo0720G2175 Vigna mungo HOM05D004666 ORTHO05D005822 4.3e-279 964.9 1205 47.6
arahy.Tifrunner.gnm1.ann1.G8H5C8 Arachis hypogaea HOM05D004666 ORTHO05D005822 6.9e-269 931.0 1006 53.3
arahy.Tifrunner.gnm1.ann1.WFL2XE Arachis hypogaea HOM05D004666 ORTHO05D005822 2.6e-268 929.1 987 54.0
arahy.Tifrunner.gnm1.ann1.T4KAXF Arachis hypogaea HOM05D004666 ORTHO05D005822 2.9e-267 925.6 1007 53.2
arahy.Tifrunner.gnm1.ann1.LSN657 Arachis hypogaea HOM05D004666 ORTHO05D005822 1.4e-248 863.6 988 51.4
Cfa002067 Carpinus fangiana HOM05D004666 ORTHO05D005822 1.3e-206 724.2 925 46.4
CiPaw.09G011000 Carya illinoinensis HOM05D004666 ORTHO05D005822 1.6e-201 707.2 920 44.7
Dinv21227 Davidia involucrata HOM05D004666 ORTHO05D005822 4.0e-200 702.6 913 45.1
QL07p039593 Quercus lobata HOM05D004666 ORTHO05D005822 8.9e-200 701.4 918 45.9
COL.COLO4_15658 Corchorus olitorius HOM05D004666 ORTHO05D005822 3.0e-195 686.4 1021 40.6
Gorai.001G233200 Gossypium raimondii HOM05D004666 ORTHO05D005822 1.4e-189 667.5 957 41.6
Rhsim05G0022800 Rhododendron simsii HOM05D004666 ORTHO05D005822 1.6e-188 664.1 907 43.9
Manes.13G012000 Manihot esculenta HOM05D004666 ORTHO05D005822 2.7e-188 663.3 933 43.3
Gohir.A07G200500 Gossypium hirsutum HOM05D004666 ORTHO05D005822 3.0e-187 659.8 939 41.2
Potri.008G200900 Populus trichocarpa HOM05D004666 ORTHO05D005822 1.1e-186 657.9 961 42.7
Gohir.D07G206800 Gossypium hirsutum HOM05D004666 ORTHO05D005822 8.1e-185 651.7 957 41.3
Thecc.01G223300 Theobroma cacao HOM05D004666 ORTHO05D005822 5.2e-184 649.0 924 41.9
TAR365G1212 Trochodendron aralioides HOM05D004666 ORTHO05D005822 1.7e-179 634.0 893 42.9
ClCG10G019140 Citrullus lanatus HOM05D004666 ORTHO05D005822 2.3e-179 633.6 899 43.0
TWI34G1071 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 1.1e-178 631.3 941 40.8
Prupe.7G114200 Prunus persica HOM05D004666 ORTHO05D005822 3.3e-178 629.8 1043 38.9
FvH4_6g18260 Fragaria vesca HOM05D004666 ORTHO05D005822 4.0e-176 622.9 1055 37.9
GSVIVG01032069001 Vitis vinifera HOM05D004666 ORTHO05D005822 4.0e-176 622.9 898 42.3
MD09G1081300 Malus domestica HOM05D004666 ORTHO05D005822 4.9e-174 615.9 1013 38.7
Cc06_g05530 Coffea canephora HOM05D004666 ORTHO05D005822 4.6e-172 609.4 973 39.5
CANSAT54G2995 Cannabis sativa HOM05D004666 ORTHO05D005822 3.0e-171 606.7 895 41.8
MD12G1022600 Malus domestica HOM05D004666 ORTHO05D005822 1.1e-170 604.7 986 39.7
MELO3C009457.2 Cucumis melo HOM05D004666 ORTHO05D005822 2.5e-170 603.6 945 40.0
vmacro17219 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 1.3e-169 601.3 1049 37.6
RcHm_v2.0_Chr4g0409331 Rosa chinensis HOM05D004666 ORTHO05D005822 2.8e-169 600.1 1103 36.6
Sed0022470 Sechium edule HOM05D004666 ORTHO05D005822 5.3e-168 595.9 908 40.1
CsaV3_3G037120 Cucumis sativus L. HOM05D004666 ORTHO05D005822 6.9e-168 595.5 943 39.6
vmacro22687 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 3.3e-162 576.6 1054 37.3
AUR62033523 Chenopodium quinoa HOM05D004666 ORTHO05D005822 4.3e-162 576.2 984 37.4
Atru.chr8.1588 Acer truncatum HOM05D004666 ORTHO05D005822 5.6e-162 575.9 807 43.4
FvH4_7g02500 Fragaria vesca HOM05D004666 ORTHO05D005822 3.1e-160 570.1 1051 35.7
EL10Ac7g16949 Beta vulgaris HOM05D004666 ORTHO05D005822 1.2e-159 568.2 978 37.7
PGR142G0825 Punica granatum HOM05D004666 ORTHO05D005822 1.2e-159 568.2 926 38.9
C05p17890 Brassica napus HOM05D004666 ORTHO05D005822 1.5e-159 567.8 893 39.2
THA.LOC104827512 Tarenaya hassleriana HOM05D004666 ORTHO05D005822 3.4e-159 566.6 909 39.5
Sp1g17360 Schrenkiella parvula HOM05D004666 ORTHO05D005822 7.6e-159 565.5 892 39.2
BcaB03g12912 Brassica carinata HOM05D004666 ORTHO05D005822 1.3e-158 564.7 906 40.0
A06p15660 Brassica napus HOM05D004666 ORTHO05D005822 2.2e-158 563.9 891 39.8
BolC5t30496H Brassica oleracea HOM05D004666 ORTHO05D005822 2.2e-158 563.9 898 39.2
BraA06t24675Z Brassica rapa HOM05D004666 ORTHO05D005822 2.2e-158 563.9 891 39.8
BolC8t49572H Brassica oleracea HOM05D004666 ORTHO05D005822 3.8e-158 563.1 905 39.7
Aqoxy3G00997 Aquilegia oxysepala HOM05D004666 ORTHO05D005822 4.9e-158 562.8 975 36.7
C08p19490 Brassica napus HOM05D004666 ORTHO05D005822 1.1e-157 561.6 927 38.9
BraA08t34913Z Brassica rapa HOM05D004666 ORTHO05D005822 1.4e-157 561.2 921 38.1
DCAR_013376 Daucus carota HOM05D004666 ORTHO05D005822 1.4e-157 561.2 914 39.1
Thhalv10006802m.g Eutrema salsugineum HOM05D004666 ORTHO05D005822 2.4e-157 560.5 902 38.9
A08p29790 Brassica napus HOM05D004666 ORTHO05D005822 1.6e-156 557.8 938 37.7
Nitab4.5_0000794g0050 Nicotiana tabacum HOM05D004666 ORTHO05D005822 1.3e-155 554.7 905 38.5
Lj2C133G10 Lonicera japonica HOM05D004666 ORTHO05D005822 5.1e-155 552.7 1036 36.0
PSO384G1605 Papaver somniferum HOM05D004666 ORTHO05D005822 1.1e-154 551.6 1073 35.1
Oeu040521.1 Olea europaea HOM05D004666 ORTHO05D005822 2.5e-154 550.4 903 39.1
Carub.0001s1905 Capsella rubella HOM05D004666 ORTHO05D005822 7.4e-154 548.9 902 39.1
Peaxi162Scf00015g00639 Petunia axillaris HOM05D004666 ORTHO05D005822 2.1e-153 547.4 943 38.5
TWI73G1120 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 1.4e-152 544.7 912 38.3
AT1G19485 Arabidopsis thaliana HOM05D004666 ORTHO05D005822 3.1e-152 543.5 916 37.3
Ciclev10011197m.g Citrus clementina HOM05D004666 ORTHO05D005822 9.0e-152 542.0 728 43.7
PSO425G0050 Papaver somniferum HOM05D004666 ORTHO05D005822 1.7e-150 537.7 1076 34.8
CARHR020050 Cardamine hirsuta HOM05D004666 ORTHO05D005822 2.2e-150 537.3 894 38.7
Aa31LG7G4140 Aethionema arabicum HOM05D004666 ORTHO05D005822 6.5e-150 535.8 914 37.4
Sopen09g004490 Solanum pennellii HOM05D004666 ORTHO05D005822 8.4e-150 535.4 968 37.2
Solyc09g009710.4 Solanum lycopersicum HOM05D004666 ORTHO05D005822 5.5e-149 532.7 968 37.1
Hund26220 Selenicereus undatus HOM05D004666 ORTHO05D005822 1.6e-148 531.2 1100 33.6
HanXRQChr01g0029141 Helianthus annuus HOM05D004666 ORTHO05D005822 6.3e-145 519.2 881 38.6
Duzib114G0569 Durio zibethinus HOM05D004666 ORTHO05D005822 2.0e-143 514.2 884 38.5
FAN06G2408 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.0e-143 514.2 1039 34.3
MBI17_g35786_MAGBIO Magnolia biondii HOM05D004666 ORTHO05D005822 1.0e-142 511.9 876 38.6
Lsat_1_v5_gn_1_48480 Lactuca sativa HOM05D004666 ORTHO05D005822 9.4e-141 505.4 877 37.5
Ah.08g210700 Amaranthus hybridus HOM05D004666 ORTHO05D005822 2.7e-140 503.8 1031 33.9
Migut.J00966 Erythranthe guttata HOM05D004666 ORTHO05D005822 3.6e-140 503.4 884 36.8
Nitab4.5_0009916g0020 Nicotiana tabacum HOM05D004666 ORTHO05D005822 3.9e-139 500.0 918 37.1
Sed0014063 Sechium edule HOM05D004666 ORTHO05D005822 8.8e-139 498.8 1065 34.1
ECA248G3102 Erigeron canadensis HOM05D004666 ORTHO05D005822 2.8e-137 493.8 1063 33.5
Haze_19573 Corylus avellana HOM05D004666 ORTHO05D005822 1.1e-136 491.9 743 42.8
AL1G32230 Arabidopsis lyrata HOM05D004666 ORTHO05D005822 2.4e-136 490.7 799 38.5
SGA_v2.0_scaffold147G36363 Striga asiatica HOM05D004666 ORTHO05D005822 1.2e-132 478.4 890 36.1
FAN03G3209 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.1e-132 477.6 1095 32.4
RcHm_v2.0_Chr3g0472691 Rosa chinensis HOM05D004666 ORTHO05D005822 1.7e-129 468.0 542 46.7
SalBow3G3865 Salvia bowleyana HOM05D004666 ORTHO05D005822 2.4e-128 464.2 897 35.8
Sc02g0001000 Simmondsia chinensis HOM05D004666 ORTHO05D005822 4.1e-128 463.4 997 33.0
ECA248G2596 Erigeron canadensis HOM05D004666 ORTHO05D005822 3.5e-127 460.3 1089 32.5
FAN02G3237 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.3e-126 458.4 801 37.0
Peaxi162Scf00036g00125 Petunia axillaris HOM05D004666 ORTHO05D005822 5.0e-126 456.4 936 34.5
HPP92_015079 Vanilla planifolia HOM05D004666 ORTHO05D005822 3.1e-120 437.2 1188 30.7
Nn2g14084 Nelumbo nucifera HOM05D004666 ORTHO05D005822 4.1e-112 410.2 675 38.7
Potri.006G036601 Populus trichocarpa HOM05D004666 ORTHO05D005822 2.7e-111 407.5 658 40.6
Sabra08G0160300 Salix brachista HOM05D004666 ORTHO05D005822 2.9e-110 404.1 617 41.0
FAN05G5602 Fragaria x ananassa HOM05D004666 ORTHO05D005822 7.2e-109 399.4 822 33.2
Sabra12G0045300 Salix brachista HOM05D004666 ORTHO05D005822 2.3e-107 394.4 647 39.7
CDE08G1659 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 3.5e-103 380.6 883 31.8
unitig_749.g14294 Utricularia gibba HOM05D004666 ORTHO05D005822 9.5e-101 372.5 881 31.9
Zm00001eb147330 Zea mays HOM05D004666 ORTHO05D005822 9.5e-93 345.9 505 39.8
AUR62028568 Chenopodium quinoa HOM05D004666 ORTHO05D005822 4.7e-92 343.6 807 32.8
Eucgr.K02035 Eucalyptus grandis HOM05D004666 ORTHO05D005822 6.6e-86 323.2 332 50.0
Os01g0858000 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 6.6e-78 296.6 611 34.4
Pp3c1_31470 Physcomitrium patens HOM05D004666 ORTHO05D005822 3.2e-72 277.7 817 26.4
Cpa.g.sc5.49 Carica papaya HOM05D004666 ORTHO05D005822 6.0e-71 273.5 328 45.4
PGSC0003DMG400008959 Solanum tuberosum HOM05D004666 ORTHO05D005822 8.6e-70 269.6 588 33.2
Mapoly0021s0027 Marchantia polymorpha HOM05D004666 ORTHO05D005822 2.6e-66 258.1 807 26.6
AagrBONN_evm.TU.Sc2ySwM_344.3422 Anthoceros agrestis HOM05D004666 ORTHO05D005822 4.4e-66 257.3 798 26.7
Hma1.2p1_2087F.1_g313760 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 9.0e-59 233.0 292 44.2
Haze_16425 Corylus avellana HOM05D004666 ORTHO05D005822 1.1e-53 216.1 307 44.3
Cpa.g.c36918 Carica papaya HOM05D004666 ORTHO05D005822 4.5e-50 204.1 224 47.3
Rhsim09G0020300 Rhododendron simsii HOM05D004666 ORTHO05D005822 1.8e-46 192.2 370 36.8
RcHm_v2.0_Chr3g0472701 Rosa chinensis HOM05D004666 ORTHO05D005822 2.3e-46 191.8 219 47.5
FAN05G4874 Fragaria x ananassa HOM05D004666 ORTHO05D005822 6.7e-46 190.3 499 31.1
RhsimUnG0189100 Rhododendron simsii HOM05D004666 ORTHO05D005822 5.6e-45 187.2 217 48.8
FAN09G1276 Fragaria x ananassa HOM05D004666 ORTHO05D005822 6.2e-44 183.7 216 46.3
ATR0820G266 Amborella trichopoda HOM05D004666 ORTHO05D005822 6.5e-41 173.7 293 37.2
ATR0820G291 Amborella trichopoda HOM05D004666 ORTHO05D005822 9.3e-40 169.9 394 30.2
Hma1.2p1_0084F.1_g043500 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 5.1e-38 164.1 339 35.4
FAN14G5421 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.5e-37 162.5 255 41.6
Hma1.2p1_0084F.1_g043480 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 3.4e-34 151.4 207 42.5
QL03p004438 Quercus lobata HOM05D004666 ORTHO05D005822 5.0e-33 147.5 240 39.6
Eucgr.L02043 Eucalyptus grandis HOM05D004666 ORTHO05D005822 3.5e-31 141.4 210 41.9
SHI23868 Sapria himalayana HOM05D004666 ORTHO05D005822 3.9e-30 137.9 217 41.0
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 5.1e-30 137.5 195 37.4
CBR_g38478 Chara braunii HOM05D004666 ORTHO05D005822 5.7e-29 134.0 677 24.1
QL03p004414 Quercus lobata HOM05D004666 ORTHO05D005822 2.2e-25 122.1 138 48.6
FAN10G4251 Fragaria x ananassa HOM05D004666 ORTHO05D005822 8.5e-25 120.2 547 24.1
Hma1.2p1_2087F.1_g313780 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 4.3e-21 107.8 214 33.6
CSS0049785 Camellia sinensis var. sinensis HOM05D004666 ORTHO05D005822 5.7e-21 107.5 119 49.6
SEGI_09998 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 2.2e-20 105.5 138 42.0
Sabra06G0024800 Salix brachista HOM05D004666 ORTHO05D005822 8.2e-20 103.6 193 35.2
SEGI_32780 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 8.2e-20 103.6 207 33.3
arahy.Tifrunner.gnm1.ann1.AE8L4W Arachis hypogaea HOM05D004666 ORTHO05D005822 1.8e-19 102.4 187 39.0
Os02g0307300 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 3.6e-15 88.2 175 32.0
Hma1.2p1_0084F.1_g043490 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 2.3e-14 85.5 85 49.4
CDE08G0815 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 1.5e-13 82.8 153 34.0
QL04p079053 Quercus lobata HOM05D004666 ORTHO05D005822 3.1e-11 75.1 256 25.8
Sabra16G0037300 Salix brachista HOM05D004666 ORTHO05D017783 2.5e-08 65.5 65 47.7
Haze_16424 Corylus avellana HOM05D004666 ORTHO05D005822 2.1e-07 62.4 150 32.7


User provided reference genes

Program Settings