Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0018549 Lotus japonicus HOM05D004634 ORTHO05D005502 1.9e-156 555.8 292 100.0
Ca_03299_v3 Cicer arietinum L. HOM05D004634 ORTHO05D005502 1.3e-120 436.8 292 79.1
arahy.Tifrunner.gnm1.ann1.1RV92X Arachis hypogaea HOM05D004634 ORTHO05D005502 7.4e-116 421.0 309 77.0
Medtr1g112860 Medicago truncatula HOM05D004634 ORTHO05D005502 7.4e-116 421.0 290 78.6
VMungo0720G0537 Vigna mungo HOM05D004634 ORTHO05D005502 7.4e-116 421.0 291 79.7
arahy.Tifrunner.gnm1.ann1.X9NSEY Arachis hypogaea HOM05D004634 ORTHO05D005502 4.8e-115 418.3 309 76.4
Phvul.007G018100 Phaseolus vulgaris HOM05D004634 ORTHO05D005502 6.3e-115 417.9 292 78.8
Glyma.20G106600 Glycine max HOM05D004634 ORTHO05D005502 3.1e-114 415.6 290 80.0
Glyma.10G283100 Glycine max HOM05D004634 ORTHO05D005502 6.9e-114 414.5 291 79.0
Psat6g232600 Pisum sativum HOM05D004634 ORTHO05D005502 1.5e-113 413.3 295 76.3
Lalb_Chr21g0307021 Lupinus albus HOM05D004634 ORTHO05D005502 3.8e-112 408.7 295 75.6
TPR.G2419 Trifolium pratense HOM05D004634 ORTHO05D005502 2.8e-107 392.5 255 81.6
CiPaw.05G084700 Carya illinoinensis HOM05D004634 ORTHO05D005502 4.1e-106 388.7 296 72.0
FAN20G2203 Fragaria x ananassa HOM05D004634 ORTHO05D005502 1.2e-105 387.1 293 74.1
FAN24G0083 Fragaria x ananassa HOM05D004634 ORTHO05D005502 1.2e-105 387.1 293 74.1
Cfa005282 Carpinus fangiana HOM05D004634 ORTHO05D005502 4.5e-105 385.2 295 72.5
FAN15G1522 Fragaria x ananassa HOM05D004634 ORTHO05D005502 1.3e-104 383.6 293 73.7
MD05G1124500 Malus domestica HOM05D004634 ORTHO05D005502 1.7e-104 383.3 294 73.1
RcHm_v2.0_Chr6g0278771 Rosa chinensis HOM05D004634 ORTHO05D005502 2.9e-104 382.5 293 73.0
FAN27G3200 Fragaria x ananassa HOM05D004634 ORTHO05D005502 6.5e-104 381.3 293 73.4
COL.COLO4_17371 Corchorus olitorius HOM05D004634 ORTHO05D005502 2.5e-103 379.4 291 71.5
MD10G1127300 Malus domestica HOM05D004634 ORTHO05D005502 9.4e-103 377.5 301 70.1
PGR042G2401 Punica granatum HOM05D004634 ORTHO05D005502 9.4e-103 377.5 293 72.7
FvH4_2g15590 Fragaria vesca HOM05D004634 ORTHO05D005502 1.2e-102 377.1 308 70.5
QL11p051507 Quercus lobata HOM05D004634 ORTHO05D005502 1.6e-102 376.7 304 68.4
Cpa.g.sc20.107 Carica papaya HOM05D004634 ORTHO05D005502 2.7e-102 375.9 298 69.1
Atru.chr5.3387 Acer truncatum HOM05D004634 ORTHO05D005502 4.0e-101 372.1 297 70.0
Gohir.A01G170200 Gossypium hirsutum HOM05D004634 ORTHO05D005502 2.0e-100 369.8 293 71.0
Dinv14123 Davidia involucrata HOM05D004634 ORTHO05D005502 4.4e-100 368.6 298 69.8
TWI31G0086 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 5.7e-100 368.2 302 69.5
CANSAT25G1088 Cannabis sativa HOM05D004634 ORTHO05D005502 9.7e-100 367.5 295 69.5
Gohir.D01G161300 Gossypium hirsutum HOM05D004634 ORTHO05D005502 9.7e-100 367.5 293 70.6
Gorai.002G199900 Gossypium raimondii HOM05D004634 ORTHO05D005502 9.7e-100 367.5 293 70.6
Dinv41921 Davidia involucrata HOM05D004634 ORTHO05D005502 1.3e-99 367.1 298 68.8
Ciclev10028955m.g Citrus clementina HOM05D004634 ORTHO05D005502 3.7e-99 365.5 296 71.3
Hma1.2p1_0163F.1_g072640 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 2.4e-98 362.8 298 68.1
Prupe.8G168200 Prunus persica HOM05D004634 ORTHO05D005502 5.3e-98 361.7 277 71.8
Duzib052G0999 Durio zibethinus HOM05D004634 ORTHO05D005502 1.6e-97 360.1 296 67.6
Manes.04G071300 Manihot esculenta HOM05D004634 ORTHO05D005502 1.7e-96 356.7 294 67.3
CiPaw.06G120500 Carya illinoinensis HOM05D004634 ORTHO05D005502 2.9e-96 355.9 293 69.3
Gorai.008G037300 Gossypium raimondii HOM05D004634 ORTHO05D005502 2.9e-96 355.9 293 68.3
Gohir.D12G036100 Gossypium hirsutum HOM05D004634 ORTHO05D005502 3.8e-96 355.5 293 68.3
Duzib132G0372 Durio zibethinus HOM05D004634 ORTHO05D005502 5.0e-96 355.1 300 68.0
Hma1.2p1_0032F.1_g019265 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 5.0e-96 355.1 310 67.1
Manes.11G097500 Manihot esculenta HOM05D004634 ORTHO05D005502 5.0e-96 355.1 293 67.6
Gohir.A12G036500 Gossypium hirsutum HOM05D004634 ORTHO05D005502 6.5e-96 354.8 293 68.3
ClCG02G012070 Citrullus lanatus HOM05D004634 ORTHO05D005502 1.9e-95 353.2 295 69.5
Eucgr.G01787 Eucalyptus grandis HOM05D004634 ORTHO05D005502 7.2e-95 351.3 308 64.6
Aqoxy6G02026 Aquilegia oxysepala HOM05D004634 ORTHO05D005502 3.6e-94 349.0 302 66.9
Potri.004G177300 Populus trichocarpa HOM05D004634 ORTHO05D005502 4.7e-94 348.6 298 69.1
Thecc.02G056100 Theobroma cacao HOM05D004634 ORTHO05D005502 4.7e-94 348.6 278 69.4
TWI79G0300 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 1.4e-93 347.1 300 66.3
CSS0049403 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 1.8e-93 346.7 297 66.7
Potri.009G137600 Populus trichocarpa HOM05D004634 ORTHO05D005502 4.0e-93 345.5 298 68.5
Nitab4.5_0003698g0030 Nicotiana tabacum HOM05D004634 ORTHO05D005502 5.2e-93 345.1 299 66.9
Actinidia21473 Actinidia chinensis HOM05D004634 ORTHO05D005502 6.8e-93 344.7 297 66.7
Sed0005362 Sechium edule HOM05D004634 ORTHO05D005502 6.8e-93 344.7 294 68.7
ClCG02G003930 Citrullus lanatus HOM05D004634 ORTHO05D005502 1.2e-92 344.0 291 65.6
AUR62010016 Chenopodium quinoa HOM05D004634 ORTHO05D005502 2.6e-92 342.8 297 65.7
Sopen01g053790 Solanum pennellii HOM05D004634 ORTHO05D005502 3.4e-92 342.4 295 66.1
Peaxi162Scf00362g00529 Petunia axillaris HOM05D004634 ORTHO05D005502 1.7e-91 340.1 296 64.9
Sabra04G0119200 Salix brachista HOM05D004634 ORTHO05D005502 1.7e-91 340.1 298 66.8
AUR62013006 Chenopodium quinoa HOM05D004634 ORTHO05D005502 2.2e-91 339.7 297 65.0
Migut.B00062 Erythranthe guttata HOM05D004634 ORTHO05D005502 1.1e-90 337.4 297 64.3
THA.LOC104804086 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 1.4e-90 337.0 295 64.4
Actinidia20523 Actinidia chinensis HOM05D004634 ORTHO05D005502 2.4e-90 336.3 277 68.2
EL10Ac9g21345 Beta vulgaris HOM05D004634 ORTHO05D005502 1.2e-89 334.0 233 75.1
Duzib248G1349 Durio zibethinus HOM05D004634 ORTHO05D005502 4.5e-89 332.0 273 68.5
Sabra09G0106800 Salix brachista HOM05D004634 ORTHO05D005502 5.9e-89 331.6 298 66.4
Sed0028226 Sechium edule HOM05D004634 ORTHO05D005502 5.9e-89 331.6 291 62.2
Rhsim11G0193300 Rhododendron simsii HOM05D004634 ORTHO05D005502 1.0e-88 330.9 231 77.5
vmacro17321 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 1.3e-88 330.5 297 64.6
Nn5g30833 Nelumbo nucifera HOM05D004634 ORTHO05D005502 1.7e-88 330.1 243 72.4
Ah.01g023190 Amaranthus hybridus HOM05D004634 ORTHO05D005502 2.9e-88 329.3 234 75.6
SGA_v2.0_scaffold58G20350 Striga asiatica HOM05D004634 ORTHO05D005502 3.8e-88 328.9 297 64.3
THA.LOC104824757 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 8.5e-88 327.8 291 63.2
Hund06448 Selenicereus undatus HOM05D004634 ORTHO05D005502 1.1e-87 327.4 232 75.9
CSS0014782 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 1.5e-87 327.0 295 65.1
MELO3C013335.2 Cucumis melo HOM05D004634 ORTHO05D005502 2.5e-87 326.2 292 63.0
MSTRG.19978 Avicennia marina HOM05D004634 ORTHO05D005502 3.2e-87 325.9 334 58.1
Solyc01g111750.4 Solanum lycopersicum HOM05D004634 ORTHO05D005502 3.2e-87 325.9 285 65.3
GSVIVG01023991001 Vitis vinifera HOM05D004634 ORTHO05D005502 4.2e-87 325.5 220 78.6
Rhsim05G0053200 Rhododendron simsii HOM05D004634 ORTHO05D005502 7.2e-87 324.7 299 64.2
MBI05_g00175_MAGBIO Magnolia biondii HOM05D004634 ORTHO05D005502 1.6e-86 323.6 239 72.8
TAR381G1727 Trochodendron aralioides HOM05D004634 ORTHO05D005502 2.1e-86 323.2 281 65.1
CDE05G0405 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 4.7e-86 322.0 231 72.3
Migut.N01330 Erythranthe guttata HOM05D004634 ORTHO05D005502 4.7e-86 322.0 297 62.6
Lj9A400T59 Lonicera japonica HOM05D004634 ORTHO05D005502 3.0e-85 319.3 293 64.2
PGSC0003DMG400018041 Solanum tuberosum HOM05D004634 ORTHO05D005502 3.0e-85 319.3 286 65.0
MELO3C020831.2 Cucumis melo HOM05D004634 ORTHO05D005502 5.2e-85 318.5 278 66.9
Sp4g00110 Schrenkiella parvula HOM05D004634 ORTHO05D005502 6.8e-85 318.2 296 62.2
AT2G20920 Arabidopsis thaliana HOM05D004634 ORTHO05D005502 1.5e-84 317.0 293 62.8
Carub.0004s0001 Capsella rubella HOM05D004634 ORTHO05D005502 1.5e-84 317.0 293 62.8
HanXRQChr17g0544171 Helianthus annuus HOM05D004634 ORTHO05D005502 5.7e-84 315.1 219 74.9
BcaB01g02957 Brassica carinata HOM05D004634 ORTHO05D005502 9.8e-84 314.3 298 62.4
CDE05G2434 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 9.8e-84 314.3 231 73.2
ECA246G0918 Erigeron canadensis HOM05D004634 ORTHO05D005502 1.3e-83 313.9 238 70.2
CARHR111820 Cardamine hirsuta HOM05D004634 ORTHO05D005502 2.2e-83 313.2 292 62.3
PSO210G1566 Papaver somniferum HOM05D004634 ORTHO05D005502 2.8e-83 312.8 255 68.2
AL4G10040 Arabidopsis lyrata HOM05D004634 ORTHO05D005502 3.7e-83 312.4 293 62.1
PSO170G0173 Papaver somniferum HOM05D004634 ORTHO05D005502 4.9e-83 312.0 257 67.7
Aa31LG6G16660 Aethionema arabicum HOM05D004634 ORTHO05D005502 8.3e-83 311.2 294 61.2
CAN.G588.96 Capsicum annuum HOM05D004634 ORTHO05D005502 1.1e-82 310.8 217 76.0
Ah.01g008170 Amaranthus hybridus HOM05D004634 ORTHO05D005502 1.8e-82 310.1 293 62.8
Aa31LG7G15710 Aethionema arabicum HOM05D004634 ORTHO05D005502 5.4e-82 308.5 257 66.9
DCAR_003183 Daucus carota HOM05D004634 ORTHO05D005502 5.4e-82 308.5 290 63.4
Zm00001eb003030 Zea mays HOM05D004634 ORTHO05D005502 2.0e-81 306.6 247 67.6
Zm00001eb402730 Zea mays HOM05D004634 ORTHO05D005502 1.7e-80 303.5 247 66.0
C03p33070 Brassica napus HOM05D004634 ORTHO05D005502 2.3e-80 303.1 297 61.3
CsaV3_2G016230 Cucumis sativus L. HOM05D004634 ORTHO05D005502 2.9e-80 302.8 264 67.0
Oeu015555.1 Olea europaea HOM05D004634 ORTHO05D005502 2.9e-80 302.8 294 61.6
vmacro02287 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 5.0e-80 302.0 287 61.3
BcaC01g04857 Brassica carinata HOM05D004634 ORTHO05D005502 6.6e-80 301.6 297 60.9
BolC3t15633H Brassica oleracea HOM05D004634 ORTHO05D005502 6.6e-80 301.6 297 60.9
Thhalv10000275m.g Eutrema salsugineum HOM05D004634 ORTHO05D005502 8.6e-80 301.2 230 71.3
Cc09_g10260 Coffea canephora HOM05D004634 ORTHO05D005502 1.1e-79 300.8 219 72.6
unitig_744.g24280 Utricularia gibba HOM05D004634 ORTHO05D005502 1.6e-78 297.0 220 72.7
A03p27430 Brassica napus HOM05D004634 ORTHO05D005502 4.7e-78 295.4 229 70.7
BraA03t11955Z Brassica rapa HOM05D004634 ORTHO05D005502 4.7e-78 295.4 229 70.7
HPP92_001746 Vanilla planifolia HOM05D004634 ORTHO05D005502 2.6e-76 289.7 237 64.1
Lsat_1_v5_gn_3_47561 Lactuca sativa HOM05D004634 ORTHO05D005502 1.1e-74 284.3 202 74.8
Nn6g31925 Nelumbo nucifera HOM05D004634 ORTHO05D005502 1.4e-74 283.9 219 69.4
Os03g0137300 Oryza sativa ssp. japonica HOM05D004634 ORTHO05D005502 5.0e-72 275.4 208 68.8
ATR0661G512 Amborella trichopoda HOM05D004634 ORTHO05D005502 4.7e-70 268.9 206 69.4
PSO541G4751 Papaver somniferum HOM05D004634 ORTHO05D005502 5.2e-69 265.4 250 58.4
Lj5A177T58 Lonicera japonica HOM05D004634 ORTHO05D005502 4.4e-68 262.3 271 60.5
TAR376G0880 Trochodendron aralioides HOM05D004634 ORTHO05D005502 4.4e-68 262.3 256 61.3
Mapoly0158s0035 Marchantia polymorpha HOM05D004634 ORTHO05D005502 2.7e-65 253.1 236 56.8
PSO675G7052 Papaver somniferum HOM05D004634 ORTHO05D005502 1.9e-63 246.9 250 55.6
AagrBONN_evm.TU.Sc2ySwM_344.2768 Anthoceros agrestis HOM05D004634 ORTHO05D005502 7.3e-63 245.0 238 56.7
Sc18g0006360 Simmondsia chinensis HOM05D004634 ORTHO05D005502 1.6e-62 243.8 240 58.8
Pp3c10_20920 Physcomitrium patens HOM05D004634 ORTHO05D005502 2.8e-62 243.0 231 58.0
Haze_02111 Corylus avellana HOM05D004634 ORTHO05D005502 4.7e-62 242.3 162 77.8
Pp3c20_20480 Physcomitrium patens HOM05D004634 ORTHO05D005502 7.1e-58 228.4 229 55.5
TAR381G0316 Trochodendron aralioides HOM05D004634 ORTHO05D005502 2.7e-57 226.5 171 70.2
Lj9A397T37 Lonicera japonica HOM05D004634 ORTHO05D005502 7.8e-57 224.9 181 68.0
SMO356G0675 Selaginella moellendorffii HOM05D004634 ORTHO05D005502 3.4e-52 209.5 235 51.1
CBR_g40579 Chara braunii HOM05D004634 ORTHO05D000002 4.6e-49 199.1 240 45.8
Actinidia32031 Actinidia chinensis HOM05D004634 ORTHO05D005502 7.3e-47 191.8 144 70.1
Atru.chr5.3399 Acer truncatum HOM05D004634 ORTHO05D005502 2.9e-43 179.9 175 61.7
Actinidia18044 Actinidia chinensis HOM05D004634 ORTHO05D005502 3.9e-40 169.5 157 63.1
DCAR_003186 Daucus carota HOM05D004634 ORTHO05D005502 2.1e-38 163.7 113 76.1
ECA246G0196 Erigeron canadensis HOM05D004634 ORTHO05D005502 2.4e-37 160.2 120 70.8
Actinidia37338 Actinidia chinensis HOM05D004634 ORTHO05D005502 1.5e-31 141.0 132 61.4
Oeu029649.1 Olea europaea HOM05D004634 ORTHO05D005502 3.7e-30 136.3 114 62.3
MCO05G599 Micromonas commoda HOM05D004634 ORTHO05D005502 6.9e-29 132.1 227 36.1
Sed0025180 Sechium edule HOM05D004634 ORTHO05D005502 7.6e-28 128.6 237 42.6
CsaV3_7G001200 Cucumis sativus L. HOM05D004634 ORTHO05D005502 2.1e-25 120.6 153 49.7
Cre03.g190150 Chlamydomonas reinhardtii HOM05D004634 ORTHO05D005502 2.4e-21 107.1 256 34.0
CsaV3_7G001190 Cucumis sativus L. HOM05D004634 ORTHO05D005502 1.6e-17 94.4 63 76.2
Actinidia32030 Actinidia chinensis HOM05D004634 ORTHO05D005502 4.6e-17 92.8 126 51.6
PRCOL_00007096 Prasinoderma coloniale HOM05D004634 ORTHO05D005502 1.4e-10 71.2 175 32.6
TWI60G0248 Tripterygium wilfordii HOM05D000764 ORTHO05D002819 9.3e-10 68.6 197 32.0
Dinv01013 Davidia involucrata HOM05D004634 ORTHO05D005502 1.6e-09 67.8 51 74.5
AUR62032163 Chenopodium quinoa HOM05D000764 ORTHO05D002819 4.6e-09 66.2 191 29.8
Dinv09272 Davidia involucrata HOM05D004634 ORTHO05D005502 7.9e-09 65.5 44 79.5
TWI81G0887 Tripterygium wilfordii HOM05D000764 ORTHO05D002819 1.3e-08 64.7 197 31.5
AUR62036921 Chenopodium quinoa HOM05D000764 ORTHO05D002819 1.8e-08 64.3 191 29.8
Sc10g0009640 Simmondsia chinensis HOM05D000764 ORTHO05D002819 1.1e-07 61.6 191 30.9
Dinv44658 Davidia involucrata HOM05D004634 ORTHO05D005502 3.3e-07 60.1 42 78.6
Hund02536 Selenicereus undatus HOM05D000764 ORTHO05D002819 5.7e-07 59.3 190 28.4
Eucgr.K02640 Eucalyptus grandis HOM05D000764 ORTHO05D002819 7.4e-07 58.9 190 30.0
Manes.01G022900 Manihot esculenta HOM05D000764 ORTHO05D002819 9.7e-07 58.5 236 28.4
Sabra12G0042300 Salix brachista HOM05D000764 ORTHO05D002819 1.3e-06 58.2 225 28.0
Sed0013361 Sechium edule HOM05D000764 ORTHO05D002819 1.3e-06 58.2 174 31.6
EL10Ac5g11218 Beta vulgaris HOM05D000764 ORTHO05D002819 1.6e-06 57.8 219 26.5
BcaC07g41182 Brassica carinata HOM05D004634 ORTHO05D005502 1.6e-06 57.8 59 54.2
MELO3C017270.2 Cucumis melo HOM05D000764 ORTHO05D002819 2.2e-06 57.4 174 29.9
Manes.05G116600 Manihot esculenta HOM05D000764 ORTHO05D002819 2.2e-06 57.4 199 29.1
QL10p022070 Quercus lobata HOM05D000764 ORTHO05D002819 2.2e-06 57.4 187 28.3
RcHm_v2.0_Chr7g0184201 Rosa chinensis HOM05D000764 ORTHO05D002819 2.2e-06 57.4 201 29.4
Pp3c15_20170 Physcomitrium patens HOM05D000764 ORTHO05D002819 2.8e-06 57.0 178 29.2
Pp3c9_17650 Physcomitrium patens HOM05D000764 ORTHO05D002819 2.8e-06 57.0 190 26.8
BcaC09g49683 Brassica carinata HOM05D000764 ORTHO05D002006 4.8e-06 56.2 174 31.6
C01p33980 Brassica napus HOM05D000764 ORTHO05D002006 4.8e-06 56.2 174 31.6
BolC1t03367H Brassica oleracea HOM05D000764 ORTHO05D002006 4.8e-06 56.2 174 31.6
Cpa.g.sc13.85 Carica papaya HOM05D000764 ORTHO05D002819 4.8e-06 56.2 196 27.6
TPR.G23891 Trifolium pratense HOM05D000764 ORTHO05D002819 4.8e-06 56.2 170 30.6
ClCG06G015190 Citrullus lanatus HOM05D000764 ORTHO05D002819 6.3e-06 55.8 174 30.5
Mapoly0125s0036 Marchantia polymorpha HOM05D000764 ORTHO05D002819 6.3e-06 55.8 179 30.2
AT5G23040 Arabidopsis thaliana HOM05D000764 ORTHO05D002819 8.2e-06 55.5 174 29.3
CsaV3_1G003070 Cucumis sativus L. HOM05D000764 ORTHO05D002819 8.2e-06 55.5 174 31.0
Gohir.D03G100100 Gossypium hirsutum HOM05D000764 ORTHO05D002819 8.2e-06 55.5 189 29.6
Gorai.003G105200 Gossypium raimondii HOM05D000764 ORTHO05D002819 8.2e-06 55.5 189 29.6
MD06G1208500 Malus domestica HOM05D000764 ORTHO05D002819 8.2e-06 55.5 184 27.7
Phvul.003G180200 Phaseolus vulgaris HOM05D000764 ORTHO05D002819 8.2e-06 55.5 181 29.3
Prupe.5G213000 Prunus persica HOM05D000764 ORTHO05D002819 8.2e-06 55.5 224 25.4


User provided reference genes

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