Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0018354 Lotus japonicus HOM05D006262 ORTHO05D007266 5.3e-235 817.4 439 100.0
Glyma.20G245900 Glycine max HOM05D006262 ORTHO05D007266 2.5e-160 569.3 442 71.0
Phvul.007G004000 Phaseolus vulgaris HOM05D006262 ORTHO05D007266 2.5e-152 542.7 446 67.3
VMungo0720G2273 Vigna mungo HOM05D006262 ORTHO05D007266 2.0e-144 516.5 448 65.0
Lalb_Chr02g0144321 Lupinus albus HOM05D006262 ORTHO05D007266 3.7e-143 512.3 447 64.2
Ca_29592_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 1.8e-142 510.0 451 66.3
Medtr1g116540 Medicago truncatula HOM05D006262 ORTHO05D007266 1.6e-138 496.9 455 62.9
arahy.Tifrunner.gnm1.ann1.6Y9ITK Arachis hypogaea HOM05D006262 ORTHO05D007266 5.7e-136 488.4 382 68.1
arahy.Tifrunner.gnm1.ann1.BL35NN Arachis hypogaea HOM05D006262 ORTHO05D007266 4.1e-134 482.3 384 67.2
TPR.G10421 Trifolium pratense HOM05D006262 ORTHO05D007266 7.2e-131 471.5 438 61.6
Psat6g241480 Pisum sativum HOM05D006262 ORTHO05D007266 5.0e-116 422.2 446 57.8
Ca_11400_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 2.7e-114 416.4 451 58.5
Ca_11403_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 6.3e-111 405.2 439 58.3
FvH4_4g11340 Fragaria vesca HOM05D006262 ORTHO05D007266 8.0e-98 361.7 380 54.5
Cfa015775 Carpinus fangiana HOM05D006262 ORTHO05D007266 1.4e-97 360.9 391 52.4
CANSAT78G0581 Cannabis sativa HOM05D006262 ORTHO05D007266 3.1e-97 359.8 392 52.6
Dinv22693 Davidia involucrata HOM05D006262 ORTHO05D007266 3.7e-95 352.8 435 46.4
Thhalv10001453m.g Eutrema salsugineum HOM05D006262 ORTHO05D007266 5.4e-94 349.0 356 54.8
Manes.04G048800 Manihot esculenta HOM05D006262 ORTHO05D007266 7.0e-94 348.6 387 51.7
TAR362G0090 Trochodendron aralioides HOM05D006262 ORTHO05D007266 4.6e-93 345.9 403 48.9
RcHm_v2.0_Chr4g0407651 Rosa chinensis HOM05D006262 ORTHO05D007266 1.3e-92 344.4 378 53.7
Prupe.1G187900 Prunus persica HOM05D006262 ORTHO05D007266 1.1e-91 341.3 375 53.3
CSS0049911 Camellia sinensis var. sinensis HOM05D006262 ORTHO05D007266 2.5e-91 340.1 394 49.0
MD04G1038000 Malus domestica HOM05D006262 ORTHO05D007266 2.5e-91 340.1 368 54.3
Sp4g25360 Schrenkiella parvula HOM05D006262 ORTHO05D007266 2.5e-91 340.1 356 53.1
Ciclev10020134m.g Citrus clementina HOM05D006262 ORTHO05D007266 2.1e-90 337.0 392 50.5
CARHR138310 Cardamine hirsuta HOM05D006262 ORTHO05D007266 3.6e-90 336.3 362 53.3
QL10p047365 Quercus lobata HOM05D006262 ORTHO05D007266 8.0e-90 335.1 437 46.9
Atru.chr3.1601 Acer truncatum HOM05D006262 ORTHO05D007266 1.4e-89 334.3 435 46.0
Atru.chr3.1609 Acer truncatum HOM05D006262 ORTHO05D007266 1.4e-89 334.3 435 46.0
BcaB01g03403 Brassica carinata HOM05D006262 ORTHO05D007266 1.8e-89 334.0 357 52.9
Carub.0004s2570 Capsella rubella HOM05D006262 ORTHO05D007266 2.3e-89 333.6 359 52.6
Hma1.2p1_0597F.1_g186430 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 2.3e-89 333.6 401 49.4
A03p24130 Brassica napus HOM05D006262 ORTHO05D007266 3.1e-89 333.2 382 51.0
C03p28720 Brassica napus HOM05D006262 ORTHO05D007266 3.1e-89 333.2 358 53.4
BraA03t11623Z Brassica rapa HOM05D006262 ORTHO05D007266 3.1e-89 333.2 382 51.0
AT2G43235 Arabidopsis thaliana HOM05D006262 ORTHO05D007266 5.2e-89 332.4 361 52.1
BcaC01g05249 Brassica carinata HOM05D006262 ORTHO05D007266 6.8e-89 332.0 358 53.4
BolC3t15234H Brassica oleracea HOM05D006262 ORTHO05D007266 8.9e-89 331.6 358 53.1
TWI63G1082 Tripterygium wilfordii HOM05D006262 ORTHO05D007266 8.9e-89 331.6 378 50.8
Rhsim09G0030700 Rhododendron simsii HOM05D006262 ORTHO05D007266 1.5e-88 330.9 386 49.2
AL4G41890 Arabidopsis lyrata HOM05D006262 ORTHO05D007266 5.8e-88 328.9 363 51.8
Aa31LG1G25040 Aethionema arabicum HOM05D006262 ORTHO05D007266 1.3e-87 327.8 379 51.5
Potri.007G124600 Populus trichocarpa HOM05D006262 ORTHO05D007266 1.7e-87 327.4 391 48.6
MBI08_g33651_MAGBIO Magnolia biondii HOM05D006262 ORTHO05D007266 4.9e-87 325.9 392 49.2
ClCG07G015820 Citrullus lanatus HOM05D006262 ORTHO05D007266 7.1e-86 322.0 403 48.9
HanXRQChr15g0494811 Helianthus annuus HOM05D006262 ORTHO05D007266 1.2e-85 321.2 408 46.6
MELO3C017699.2 Cucumis melo HOM05D006262 ORTHO05D007266 3.5e-85 319.7 441 45.6
vmacro00601 Vaccinium macrocarpon HOM05D006262 ORTHO05D007266 4.6e-85 319.3 427 45.7
Sed0004128 Sechium edule HOM05D006262 ORTHO05D007266 2.3e-84 317.0 402 47.3
CsaV3_4G003530 Cucumis sativus L. HOM05D006262 ORTHO05D007266 2.5e-83 313.5 441 44.7
DCAR_023918 Daucus carota HOM05D006262 ORTHO05D007266 2.5e-83 313.5 379 47.2
ECA238G4140 Erigeron canadensis HOM05D000005 ORTHO05D000012 3.3e-83 313.2 363 49.0
PGR142G3389 Punica granatum HOM05D006262 ORTHO05D007266 7.3e-83 312.0 380 48.2
Thecc.05G002700 Theobroma cacao HOM05D006262 ORTHO05D007266 9.5e-83 311.6 385 47.3
ATR0743G268 Amborella trichopoda HOM05D006262 ORTHO05D007266 5.2e-81 305.8 387 45.2
COL.COLO4_14416 Corchorus olitorius HOM05D006262 ORTHO05D007266 1.5e-80 304.3 383 48.6
Sabra07G0100700 Salix brachista HOM05D006262 ORTHO05D002297 1.7e-79 300.8 385 47.0
Sc13g0007690 Simmondsia chinensis HOM05D006262 ORTHO05D007266 4.6e-77 292.7 384 45.8
Lsat_1_v5_gn_2_51881 Lactuca sativa HOM05D006262 ORTHO05D007266 7.8e-77 292.0 390 43.1
PSO675G4698 Papaver somniferum HOM05D006262 ORTHO05D007266 7.8e-77 292.0 363 47.7
Duzib093G0344 Durio zibethinus HOM05D006262 ORTHO05D007266 1.0e-76 291.6 369 46.3
Cc03_g13170 Coffea canephora HOM05D006262 ORTHO05D007266 3.0e-76 290.0 382 43.2
MSTRG.24585 Avicennia marina HOM05D006262 ORTHO05D007266 1.5e-75 287.7 381 44.4
EL10Ac3g06302 Beta vulgaris HOM05D006262 ORTHO05D007266 2.8e-74 283.5 381 45.9
Gohir.D04G136100 Gossypium hirsutum HOM05D006262 ORTHO05D007266 2.8e-74 283.5 381 45.7
Gorai.012G119900 Gossypium raimondii HOM05D006262 ORTHO05D007266 2.8e-74 283.5 383 46.5
Solyc09g098530.4 Solanum lycopersicum HOM05D006262 ORTHO05D007266 2.8e-74 283.5 448 41.3
Gohir.A04G096300 Gossypium hirsutum HOM05D006262 ORTHO05D007266 3.6e-74 283.1 383 46.0
Eucgr.A00253 Eucalyptus grandis HOM05D006262 ORTHO05D007266 6.2e-74 282.3 331 49.2
PGSC0003DMG400021613 Solanum tuberosum HOM05D006262 ORTHO05D007266 6.2e-74 282.3 375 45.6
PSO017G4626 Papaver somniferum HOM05D006262 ORTHO05D007266 3.1e-73 280.0 358 46.9
Sopen09g036450 Solanum pennellii HOM05D006262 ORTHO05D007266 5.2e-73 279.3 448 40.4
Aqoxy2G04115 Aquilegia oxysepala HOM05D006262 ORTHO05D007266 7.6e-72 275.4 403 40.7
Nn1g09825 Nelumbo nucifera HOM05D006262 ORTHO05D007266 7.6e-72 275.4 374 44.1
Hund22599 Selenicereus undatus HOM05D006262 ORTHO05D007266 2.2e-71 273.9 392 46.2
Ah.07g204100 Amaranthus hybridus HOM05D006262 ORTHO05D007266 6.4e-71 272.3 379 43.8
Lj3A232G38 Lonicera japonica HOM05D006262 ORTHO05D007266 1.1e-70 271.6 389 43.2
Migut.N03113 Erythranthe guttata HOM05D006262 ORTHO05D007266 1.6e-69 267.7 370 42.7
SalBow6G1208 Salvia bowleyana HOM05D006262 ORTHO05D007266 8.7e-68 261.9 390 40.5
GSVIVG01013579001 Vitis vinifera HOM05D006262 ORTHO05D007266 8.7e-68 261.9 230 58.7
Haze_00720 Corylus avellana HOM05D006262 ORTHO05D007266 2.5e-67 260.4 491 38.1
CDE09G0849 Ceratophyllum demersum HOM05D006262 ORTHO05D007266 1.6e-66 257.7 302 47.7
Os05g0299200 Oryza sativa ssp. japonica HOM05D006262 ORTHO05D007266 3.1e-65 253.4 355 43.9
HPP92_024424 Vanilla planifolia HOM05D006262 ORTHO05D007266 9.9e-64 248.4 370 39.7
Zm00001eb350760 Zea mays HOM05D006262 ORTHO05D007266 3.8e-63 246.5 343 43.4
unitig_27.g25149 Utricularia gibba HOM05D006262 ORTHO05D007266 1.1e-62 245.0 357 40.3
Oeu029569.3 Olea europaea HOM05D006262 ORTHO05D007266 8.7e-60 235.3 450 34.2
AagrBONN_evm.TU.Sc2ySwM_344.5117 Anthoceros agrestis HOM05D006262 ORTHO05D007266 8.4e-55 218.8 351 39.6
AUR62030023 Chenopodium quinoa HOM05D006262 ORTHO05D007266 3.0e-52 210.3 432 41.7
AUR62002605 Chenopodium quinoa HOM05D006262 ORTHO05D007266 3.9e-52 209.9 383 40.2
SEGI_17174 Sequoiadendron giganteum HOM05D006262 ORTHO05D007266 6.7e-52 209.1 368 37.8
CiPaw.01G102600 Carya illinoinensis HOM05D006262 ORTHO05D007266 1.8e-49 201.1 292 44.5
Nitab4.5_0002908g0080 Nicotiana tabacum HOM05D006262 ORTHO05D007266 3.8e-47 193.4 164 58.5
Nitab4.5_0001049g0110 Nicotiana tabacum HOM05D006262 ORTHO05D007266 5.5e-46 189.5 161 59.0
Peaxi162Scf00286g00119 Petunia axillaris HOM05D006262 ORTHO05D007266 3.5e-45 186.8 166 56.6
Mapoly0004s0159 Marchantia polymorpha HOM05D006262 ORTHO05D007266 1.0e-44 185.3 363 33.9
SMO351G0235 Selaginella moellendorffii HOM05D006262 ORTHO05D007266 5.7e-43 179.5 284 41.2
Hma1.2p1_0597F.1_g186420 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 9.0e-41 172.2 133 65.4
Pp3c12_3930 Physcomitrium patens HOM05D006262 ORTHO05D007266 1.9e-38 164.5 371 31.8
SGA_v2.0_scaffold31G12573 Striga asiatica HOM05D006262 ORTHO05D007266 2.1e-37 161.0 381 34.1
Glyma.10G295900 Glycine max HOM05D006262 ORTHO05D007266 4.6e-37 159.8 180 55.6
Pp3c9_3680 Physcomitrium patens HOM05D006262 ORTHO05D007266 1.2e-32 145.2 365 29.0
Cpa.g.sc71.28 Carica papaya HOM05D006262 ORTHO05D007266 8.2e-26 122.5 201 40.3
Nitab4.5_0001049g0100 Nicotiana tabacum HOM05D006262 ORTHO05D007266 2.0e-24 117.9 188 38.3
Nitab4.5_0002908g0070 Nicotiana tabacum HOM05D006262 ORTHO05D007266 3.4e-24 117.1 189 38.6
Cpa.g.sc71.30 Carica papaya HOM05D006262 ORTHO05D007266 3.2e-22 110.5 86 67.4
Peaxi162Scf00286g10017 Petunia axillaris HOM05D006262 ORTHO05D007266 4.2e-22 110.2 214 36.0
FAN17G0796 Fragaria x ananassa HOM05D006262 ORTHO05D007266 2.3e-20 104.4 75 65.3
PRCOL_00005486 Prasinoderma coloniale HOM05D006262 ORTHO05D007266 4.4e-19 100.1 384 29.7
MCO03G554 Micromonas commoda HOM05D006262 ORTHO05D007266 7.4e-19 99.4 312 28.8
Hma1.2p1_0597F.1_g186440 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 4.8e-18 96.7 200 36.5
CAN.G688.4 Capsicum annuum HOM05D006262 ORTHO05D007266 1.2e-16 92.0 75 60.0
QL09p046233 Quercus lobata HOM05D006262 ORTHO05D007266 1.1e-14 85.5 83 59.0
FAN07G2249 Fragaria x ananassa HOM05D006262 ORTHO05D007266 1.4e-12 78.6 46 80.4
FvH4_c17g00080 Fragaria vesca HOM05D006262 ORTHO05D007266 4.0e-12 77.0 60 65.0
CAN.G51.2 Capsicum annuum HOM05D006262 ORTHO05D007266 7.5e-11 72.8 75 50.7
Cre01.g049900 Chlamydomonas reinhardtii HOM05D006262 ORTHO05D007266 1.7e-10 71.6 317 24.9
GSVIVG01020265001 Vitis vinifera HOM05D006262 ORTHO05D007266 2.8e-10 70.9 117 46.2
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 1.2e-08 65.5 74 52.7
BraA10t42873Z Brassica rapa HOM05D006262 ORTHO05D007266 8.5e-07 59.3 164 31.1
Glyma.11G176311 Glycine max HOM05D000774 ORTHO05D000602 3.2e-06 57.4 30 93.3


User provided reference genes

Program Settings