Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 4.1e-295 1017.3 509 100.0
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 1.1e-268 929.5 510 91.8
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 1.9e-247 859.0 510 83.9
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 2.7e-246 855.1 511 83.6
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 5.1e-245 850.9 509 84.7
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 1.9e-244 849.0 511 84.0
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 8.1e-243 843.6 508 82.9
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 2.4e-242 842.0 510 82.2
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 9.2e-239 830.1 510 81.8
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 1.0e-237 826.6 510 81.8
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 9.6e-236 820.1 511 80.0
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 5.2e-234 814.3 511 78.9
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.5e-233 812.8 511 79.3
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.9e-232 808.5 511 78.5
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 1.5e-212 743.0 434 84.1
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 2.5e-207 725.7 506 70.8
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 6.3e-203 711.1 509 69.2
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 1.4e-202 709.9 509 69.5
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 2.4e-202 709.1 511 69.9
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 3.4e-201 705.3 510 68.4
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 3.4e-201 705.3 509 68.6
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 5.9e-201 704.5 509 69.0
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 5.0e-200 701.4 510 69.0
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 5.0e-200 701.4 503 69.0
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 8.5e-200 700.7 511 68.5
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 4.2e-199 698.4 510 69.4
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 9.3e-199 697.2 510 68.4
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.0e-197 692.2 518 68.0
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 8.8e-197 690.6 509 67.6
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 2.5e-196 689.1 512 67.8
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 3.3e-196 688.7 506 67.0
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 4.3e-196 688.3 512 68.0
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 2.8e-195 685.6 509 67.8
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 2.8e-195 685.6 529 65.4
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 5.3e-194 681.4 513 66.7
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 6.5e-192 674.5 505 67.1
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 8.5e-192 674.1 501 67.5
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 8.5e-192 674.1 507 66.3
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.4e-191 673.3 514 66.5
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 1.9e-191 672.9 506 66.4
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.2e-190 670.2 501 67.5
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 2.7e-190 669.1 501 67.1
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 1.0e-189 667.2 512 66.8
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 1.8e-189 666.4 505 67.1
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 6.7e-189 664.5 497 66.2
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.3e-188 662.1 510 65.5
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.3e-188 662.1 510 65.5
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 4.4e-188 661.8 506 64.2
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 8.2e-187 657.5 509 64.6
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 1.4e-186 656.8 596 58.1
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 1.5e-185 653.3 511 64.0
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 4.5e-185 651.7 507 65.1
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 1.0e-184 650.6 521 63.7
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 3.8e-184 648.7 506 64.6
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 1.4e-183 646.7 509 64.2
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 1.4e-183 646.7 504 65.1
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 1.9e-183 646.4 503 64.2
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 1.9e-183 646.4 499 66.1
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 1.4e-181 640.2 570 58.2
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 1.7e-179 633.3 505 63.0
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 3.7e-179 632.1 508 63.6
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 8.2e-179 630.9 511 63.4
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 5.3e-178 628.2 505 62.4
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 1.6e-177 626.7 508 63.4
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 2.6e-177 625.9 496 62.1
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 3.5e-177 625.5 508 63.4
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 3.5e-177 625.5 520 61.7
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 5.9e-177 624.8 497 64.6
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 6.5e-176 621.3 513 62.6
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 8.5e-176 620.9 475 65.1
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 1.5e-175 620.2 505 62.2
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 1.9e-175 619.8 509 63.5
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 9.4e-175 617.5 499 62.9
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 2.7e-174 615.9 508 61.8
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 3.6e-174 615.5 509 62.9
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 3.6e-174 615.5 509 63.1
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 6.1e-174 614.8 489 64.0
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 6.1e-174 614.8 509 62.5
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 1.0e-173 614.0 492 63.8
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 1.4e-173 613.6 489 64.0
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 1.4e-173 613.6 489 64.0
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 1.4e-173 613.6 505 60.6
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 2.3e-173 612.8 505 63.0
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 3.0e-173 612.5 457 66.5
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 5.2e-173 611.7 505 60.8
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 3.7e-171 605.5 510 61.0
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 8.2e-171 604.4 507 61.9
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 1.4e-170 603.6 499 60.5
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 1.2e-169 600.5 504 62.1
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 1.7e-168 596.7 553 57.5
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 9.4e-167 590.9 459 63.2
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 3.6e-166 589.0 545 56.1
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 4.7e-166 588.6 504 60.9
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 6.1e-166 588.2 481 63.0
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 6.8e-165 584.7 436 65.8
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 5.7e-164 581.6 434 66.4
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 2.4e-162 576.2 480 61.7
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 5.5e-159 565.1 506 58.5
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.6e-158 563.5 442 64.3
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 2.1e-158 563.1 515 57.9
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 1.8e-157 560.1 493 58.8
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 4.0e-157 558.9 458 62.7
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 7.8e-153 544.7 461 59.4
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 4.7e-150 535.4 355 73.0
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 4.4e-148 528.9 480 55.2
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.7e-145 519.6 369 71.3
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 1.5e-140 503.8 379 65.7
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 2.3e-136 490.0 368 65.2
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 2.3e-133 479.9 412 59.2
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 5.4e-130 468.8 490 53.1
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.3e-128 464.2 447 56.4
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 1.3e-123 447.6 387 59.7
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 9.9e-116 421.4 478 47.1
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 8.4e-115 418.3 465 48.6
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 1.1e-109 401.4 439 49.2
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 7.4e-103 378.6 388 53.6
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 3.1e-101 373.2 496 43.3
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 6.9e-101 372.1 293 64.5
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 4.0e-93 346.3 324 57.1
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 3.4e-76 290.0 482 37.1
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 7.7e-76 288.9 395 45.1
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 1.3e-70 271.6 459 37.5
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 1.4e-69 268.1 477 38.4
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 7.0e-61 239.2 240 53.3
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 2.6e-55 220.7 516 32.4
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 9.7e-55 218.8 374 35.6
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 9.1e-53 212.2 164 68.3
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 4.5e-52 209.9 183 59.0
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 9.2e-37 159.1 248 39.1
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 7.8e-36 156.0 211 42.2
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.8e-33 147.5 100 74.0
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 4.7e-33 146.7 92 77.2
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 2.2e-30 137.9 130 56.2
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 4.7e-25 120.2 345 26.1
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 5.4e-21 106.7 106 55.7
Medtr7g051967 Medicago truncatula HOM05D005505 ORTHO05D036509 8.6e-19 99.4 74 70.3
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 1.3e-14 85.5 65 64.6
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 5.4e-13 80.1 54 66.7
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 2.3e-11 74.7 49 75.5
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 1.9e-10 71.6 66 62.1
Lj6g0008505 Lotus japonicus HOM05D053840 ORTHO05D036509 1.2e-09 68.9 51 72.5
Lj3g0012363 Lotus japonicus HOM05D053840 ORTHO05D036509 1.6e-09 68.6 36 91.7


User provided reference genes

Program Settings