Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0017876 Lotus japonicus HOM05D007246 ORTHO05D009066 1.3e-58 229.6 121 100.0
TPR.G18552 Trifolium pratense HOM05D007246 ORTHO05D009066 1.4e-44 183.0 119 79.0
Glyma.20G199500 Glycine max HOM05D007246 ORTHO05D009066 2.0e-43 179.1 121 76.0
Phvul.L001676 Phaseolus vulgaris HOM05D007246 ORTHO05D009066 4.5e-43 177.9 121 77.7
Psat6g131200 Pisum sativum HOM05D007246 ORTHO05D009066 8.5e-42 173.7 119 74.8
Ca_09797_v3 Cicer arietinum L. HOM05D007246 ORTHO05D009066 1.1e-41 173.3 119 74.8
Lalb_Chr06g0169561 Lupinus albus HOM05D007246 ORTHO05D009066 7.2e-41 170.6 121 71.1
Medtr1g073190 Medicago truncatula HOM05D007246 ORTHO05D009066 2.2e-37 159.1 119 70.6
Manes.18G076600 Manihot esculenta HOM05D007246 ORTHO05D009066 8.3e-37 157.1 115 70.4
VMungo0720G2760 Vigna mungo HOM05D003112 ORTHO05D003660 1.6e-35 152.9 100 76.0
Potri.002G084400 Populus trichocarpa HOM05D007246 ORTHO05D009066 4.5e-35 151.4 119 64.7
arahy.Tifrunner.gnm1.ann1.B2XLC5 Arachis hypogaea HOM05D007246 ORTHO05D009066 2.9e-34 148.7 121 63.6
QL09p034990 Quercus lobata HOM05D007246 ORTHO05D009066 5.0e-34 147.9 115 66.1
arahy.Tifrunner.gnm1.ann1.HQB0BQ Arachis hypogaea HOM05D007246 ORTHO05D009066 6.6e-34 147.5 121 62.8
Duzib093G0837 Durio zibethinus HOM05D007246 ORTHO05D009066 6.6e-34 147.5 115 63.5
Gorai.010G050000 Gossypium raimondii HOM05D007246 ORTHO05D009066 8.0e-32 140.6 107 64.5
CANSAT25G3837 Cannabis sativa HOM05D007246 ORTHO05D009066 1.4e-31 139.8 115 60.9
FvH4_2g26810 Fragaria vesca HOM05D007246 ORTHO05D009066 3.0e-31 138.7 113 64.6
FAN15G0425 Fragaria x ananassa HOM05D007246 ORTHO05D009066 3.0e-31 138.7 113 64.6
Gohir.A06G044000 Gossypium hirsutum HOM05D007246 ORTHO05D009066 3.0e-31 138.7 97 69.1
Thecc.08G124300 Theobroma cacao HOM05D007246 ORTHO05D009066 3.0e-31 138.7 115 63.5
RcHm_v2.0_Chr6g0295671 Rosa chinensis HOM05D007246 ORTHO05D009066 4.0e-31 138.3 111 64.9
CiPaw.05G222500 Carya illinoinensis HOM05D007246 ORTHO05D009066 5.2e-31 137.9 116 62.9
Prupe.1G499600 Prunus persica HOM05D007246 ORTHO05D009066 1.2e-30 136.7 117 62.4
ClCG11G015710 Citrullus lanatus HOM05D007246 ORTHO05D009066 2.0e-30 136.0 121 61.2
Gohir.D06G044900 Gossypium hirsutum HOM05D007246 ORTHO05D009066 2.0e-30 136.0 108 63.9
Ciclev10002868m.g Citrus clementina HOM05D007246 ORTHO05D009066 2.6e-30 135.6 120 55.8
FAN27G1944 Fragaria x ananassa HOM05D007246 ORTHO05D009066 5.7e-30 134.4 106 65.1
Haze_00452 Corylus avellana HOM05D007246 ORTHO05D009066 1.3e-29 133.3 120 59.2
Atru.chr10.1388 Acer truncatum HOM05D007246 ORTHO05D009066 4.9e-29 131.3 113 61.1
COL.COLO4_35932 Corchorus olitorius HOM05D007246 ORTHO05D009066 4.9e-29 131.3 122 60.7
GSVIVG01008877001 Vitis vinifera HOM05D007246 ORTHO05D009066 8.3e-29 130.6 113 62.8
MD08G1164500 Malus domestica HOM05D007246 ORTHO05D009066 1.1e-28 130.2 115 60.0
Cfa016011 Carpinus fangiana HOM05D007246 ORTHO05D009066 1.8e-28 129.4 120 57.5
Eucgr.F03786 Eucalyptus grandis HOM05D007246 ORTHO05D009066 1.8e-28 129.4 115 57.4
Sed0023701 Sechium edule HOM05D007246 ORTHO05D009066 2.4e-28 129.0 121 56.2
Nn5g28257 Nelumbo nucifera HOM05D007246 ORTHO05D009066 3.2e-28 128.6 112 59.8
CsaV3_4G028300 Cucumis sativus L. HOM05D007246 ORTHO05D009066 5.4e-28 127.9 121 58.7
TWI36G0927 Tripterygium wilfordii HOM05D007246 ORTHO05D009066 1.2e-27 126.7 119 57.1
Aqoxy6G00205 Aquilegia oxysepala HOM05D007246 ORTHO05D009066 7.8e-27 124.0 111 55.0
MELO3C010475.2 Cucumis melo HOM05D007246 ORTHO05D009066 7.8e-27 124.0 121 57.0
EL10Ac1g01002 Beta vulgaris HOM05D007246 ORTHO05D009066 3.9e-26 121.7 94 63.8
PGR142G2996 Punica granatum HOM05D007246 ORTHO05D009066 1.5e-25 119.8 122 54.1
Hma1.2p1_0186F.1_g081760 Hydrangea macrophylla HOM05D007246 ORTHO05D009066 2.5e-25 119.0 120 55.0
Hund17288 Selenicereus undatus HOM05D007246 ORTHO05D009066 2.1e-24 115.9 94 62.8
Actinidia02617 Actinidia chinensis HOM05D007246 ORTHO05D009066 6.2e-24 114.4 116 56.0
Rhsim03G0059000 Rhododendron simsii HOM05D007246 ORTHO05D009066 6.2e-24 114.4 117 52.1
Cpa.g.sc36.60 Carica papaya HOM05D007246 ORTHO05D009066 8.0e-24 114.0 101 61.4
AT1G48200 Arabidopsis thaliana HOM05D007246 ORTHO05D009066 1.0e-23 113.6 117 55.6
Oeu040422.1 Olea europaea HOM05D007246 ORTHO05D009066 1.4e-23 113.2 118 53.4
PGSC0003DMG400000898 Solanum tuberosum HOM05D007246 ORTHO05D009066 1.4e-23 113.2 119 48.7
TAR381G0547 Trochodendron aralioides HOM05D007246 ORTHO05D009066 1.4e-23 113.2 101 56.4
CSS0048322 Camellia sinensis var. sinensis HOM05D007246 ORTHO05D009066 1.8e-23 112.8 117 51.3
Thhalv10011824m.g Eutrema salsugineum HOM05D007246 ORTHO05D009066 1.8e-23 112.8 114 54.4
Nitab4.5_0001803g0080 Nicotiana tabacum HOM05D007246 ORTHO05D009066 2.3e-23 112.5 119 48.7
Peaxi162Scf00537g00034 Petunia axillaris HOM05D007246 ORTHO05D009066 2.3e-23 112.5 119 50.4
Sp1g35150 Schrenkiella parvula HOM05D007246 ORTHO05D009066 2.3e-23 112.5 112 54.5
Lsat_1_v5_gn_5_179321 Lactuca sativa HOM05D007246 ORTHO05D009066 4.0e-23 111.7 103 54.4
PSO170G1503 Papaver somniferum HOM05D007246 ORTHO05D009066 4.0e-23 111.7 121 51.2
C06p02690 Brassica napus HOM05D007246 ORTHO05D009066 8.9e-23 110.5 117 51.3
BolC6t35395H Brassica oleracea HOM05D007246 ORTHO05D009066 8.9e-23 110.5 117 51.3
Carub.0001s3729 Capsella rubella HOM05D007246 ORTHO05D009066 1.2e-22 110.2 117 53.8
HanXRQChr13g0407621 Helianthus annuus HOM05D007246 ORTHO05D009066 1.5e-22 109.8 121 52.9
PSO528G0221 Papaver somniferum HOM05D007246 ORTHO05D009066 1.5e-22 109.8 121 51.2
Sopen11g007630 Solanum pennellii HOM05D007246 ORTHO05D009066 1.5e-22 109.8 119 45.4
Solyc11g012890.2 Solanum lycopersicum HOM05D007246 ORTHO05D009066 2.0e-22 109.4 119 45.4
Ah.05g171160 Amaranthus hybridus HOM05D007246 ORTHO05D009066 3.4e-22 108.6 87 59.8
AL1G54790 Arabidopsis lyrata HOM05D007246 ORTHO05D009066 4.4e-22 108.2 111 55.0
BcaC08g43014 Brassica carinata HOM05D007246 ORTHO05D009066 5.8e-22 107.8 117 50.4
Aa31LG10G5550 Aethionema arabicum HOM05D007246 ORTHO05D009066 9.8e-22 107.1 119 52.1
BcaC06g31695 Brassica carinata HOM05D007246 ORTHO05D009066 1.7e-21 106.3 112 51.8
A06p47840 Brassica napus HOM05D007246 ORTHO05D009066 2.9e-21 105.5 112 50.9
BraA06t27654Z Brassica rapa HOM05D007246 ORTHO05D009066 2.9e-21 105.5 112 50.9
DCAR_003548 Daucus carota HOM05D007246 ORTHO05D009066 6.4e-21 104.4 97 54.6
A06p04630 Brassica napus HOM05D007246 ORTHO05D009066 8.3e-21 104.0 115 49.6
BcaC06g34651 Brassica carinata HOM05D007246 ORTHO05D009066 2.4e-20 102.4 112 50.0
C07p26120 Brassica napus HOM05D007246 ORTHO05D009066 2.4e-20 102.4 112 50.0
BolC7t43138H Brassica oleracea HOM05D007246 ORTHO05D009066 2.4e-20 102.4 112 50.0
ECA248G1302 Erigeron canadensis HOM05D007246 ORTHO05D009066 7.0e-20 100.9 120 47.5
Sp1g35170 Schrenkiella parvula HOM05D007246 ORTHO05D009066 7.0e-20 100.9 114 50.0
Sc25g0000500 Simmondsia chinensis HOM05D007246 ORTHO05D009066 7.0e-20 100.9 95 53.7
BraA06t23667Z Brassica rapa HOM05D007246 ORTHO05D009066 9.2e-20 100.5 114 50.0
Migut.C01135 Erythranthe guttata HOM05D007246 ORTHO05D009066 1.2e-19 100.1 119 47.1
MSTRG.1448 Avicennia marina HOM05D007246 ORTHO05D009066 7.8e-19 97.4 101 48.5
Nitab4.5_0001273g0060 Nicotiana tabacum HOM05D007246 ORTHO05D009066 7.8e-19 97.4 93 49.5
SGA_v2.0_scaffold24G10465 Striga asiatica HOM05D007246 ORTHO05D009066 1.0e-18 97.1 93 52.7
THA.LOC104821809 Tarenaya hassleriana HOM05D007246 ORTHO05D009066 1.2e-16 90.1 116 46.6
CARHR037830 Cardamine hirsuta HOM05D007246 ORTHO05D009066 8.1e-16 87.4 76 56.6
Carub.0007s3396 Capsella rubella HOM05D007246 ORTHO05D009066 1.4e-15 86.7 115 47.0
unitig_37.g12972 Utricularia gibba HOM05D007246 ORTHO05D009066 1.4e-15 86.7 100 46.0
MBI01_g01254_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 2.3e-15 85.9 79 51.9
FAN20G0163 Fragaria x ananassa HOM05D007246 ORTHO05D009066 6.8e-15 84.3 63 69.8
MBI01_g01252_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 6.8e-15 84.3 79 50.6
CDE06G1719 Ceratophyllum demersum HOM05D007246 ORTHO05D009066 8.9e-15 84.0 99 45.5
MBI01_g01255_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 8.9e-15 84.0 79 50.6
MBI01_g01253_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 1.2e-14 83.6 101 44.6
BcaB07g33783 Brassica carinata HOM05D007246 ORTHO05D009066 7.5e-14 80.9 103 47.6
SalBow7G0738 Salvia bowleyana HOM05D007246 ORTHO05D009066 6.4e-13 77.8 102 40.2
SGA_v2.0_scaffold52G18970 Striga asiatica HOM05D007246 ORTHO05D009066 7.8e-11 70.9 105 40.0
ATR0716G022 Amborella trichopoda HOM05D007246 ORTHO05D009066 2.3e-10 69.3 85 45.9
Os06g0149500 Oryza sativa ssp. japonica HOM05D007246 ORTHO05D009066 6.6e-10 67.8 82 41.5
BcaB07g33731 Brassica carinata HOM05D007246 ORTHO05D009066 5.6e-09 64.7 75 48.0
BcaB07g33733 Brassica carinata HOM05D007246 ORTHO05D009066 5.6e-09 64.7 75 48.0
arahy.Tifrunner.gnm1.ann1.65RZ9M Arachis hypogaea HOM05D007246 ORTHO05D009066 3.6e-08 62.0 69 49.3
HPP92_002815 Vanilla planifolia HOM05D007246 ORTHO05D009066 6.2e-08 61.2 66 47.0
Peaxi162Scf17552g00001 Petunia axillaris HOM05D007246 ORTHO05D009066 2.3e-07 59.3 63 50.8
Lsat_1_v5_gn_4_16480 Lactuca sativa HOM05D007246 ORTHO05D009066 5.2e-07 58.2 51 52.9
SEGI_11751 Sequoiadendron giganteum HOM05D007246 ORTHO05D009066 1.5e-06 56.6 91 34.1
SGA_v2.0_scaffold52G18969 Striga asiatica HOM05D007246 ORTHO05D009066 2.6e-06 55.8 79 40.5


User provided reference genes

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