Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 6.4e-224 780.4 387 100.0
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 2.7e-142 509.2 445 62.9
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 4.4e-140 501.9 465 60.4
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 4.4e-140 501.9 459 59.5
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 1.7e-139 500.0 465 59.6
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 2.3e-128 463.0 481 54.5
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 4.7e-126 455.3 484 53.9
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 1.0e-125 454.1 495 53.7
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 1.1e-122 444.1 405 61.0
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 2.0e-121 439.9 506 51.8
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 7.8e-121 438.0 508 51.4
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 1.5e-119 433.7 477 53.9
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 5.6e-119 431.8 473 52.6
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 3.6e-118 429.1 489 50.7
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 6.2e-118 428.3 338 67.8
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 1.2e-116 424.1 475 50.9
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 2.6e-116 422.9 474 50.2
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 3.7e-115 419.1 473 48.2
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 4.9e-115 418.7 477 50.3
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 1.9e-114 416.8 474 48.3
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 4.1e-114 415.6 474 48.3
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 7.0e-114 414.8 475 49.3
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 7.8e-113 411.4 475 50.1
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 1.3e-112 410.6 477 49.7
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 1.7e-112 410.2 479 50.5
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 5.1e-112 408.7 457 52.3
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 8.1e-110 401.4 475 48.2
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 4.0e-109 399.1 416 52.9
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 6.8e-109 398.3 417 52.5
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 2.6e-108 396.4 491 47.5
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 4.4e-108 395.6 389 55.3
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 7.5e-108 394.8 418 52.2
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 9.9e-108 394.4 411 53.5
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.4e-106 390.6 457 49.9
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 2.4e-106 389.8 464 48.7
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 4.1e-106 389.0 479 46.3
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 7.1e-106 388.3 477 47.4
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 9.2e-106 387.9 406 53.0
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 1.6e-105 387.1 390 54.9
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 1.3e-104 384.0 382 56.0
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 5.1e-104 382.1 427 51.3
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.5e-103 380.6 434 50.7
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 7.3e-103 378.3 383 53.8
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.2e-102 377.5 433 49.9
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 6.8e-101 371.7 414 52.9
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 6.8e-101 371.7 414 52.9
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 8.9e-101 371.3 395 51.1
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 2.6e-100 369.8 472 45.1
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 2.6e-100 369.8 476 45.4
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 2.6e-100 369.8 417 50.6
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 3.4e-100 369.4 396 54.0
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 4.4e-100 369.0 422 50.7
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 9.9e-100 367.9 396 51.8
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 3.8e-99 365.9 414 52.4
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 4.9e-99 365.5 474 46.0
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.4e-98 364.0 414 52.7
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.4e-98 364.0 413 52.8
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 5.4e-98 362.1 234 77.4
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 7.1e-98 361.7 393 50.9
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 1.6e-97 360.5 471 45.4
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 1.6e-97 360.5 389 51.7
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 1.6e-97 360.5 471 44.6
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 1.0e-96 357.8 386 50.0
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 3.0e-96 356.3 479 42.6
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 5.1e-96 355.5 437 47.1
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 1.4e-93 347.4 392 49.2
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 1.5e-92 344.0 474 41.8
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 4.4e-92 342.4 471 42.7
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 7.6e-92 341.7 412 46.4
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 1.3e-91 340.9 403 49.1
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 6.4e-91 338.6 444 45.0
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 6.4e-91 338.6 396 48.5
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 1.4e-90 337.4 425 48.0
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 3.2e-90 336.3 383 49.9
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 4.2e-90 335.9 383 49.9
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 3.9e-88 329.3 396 47.7
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 6.6e-88 328.6 431 44.8
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 2.5e-87 326.6 441 44.2
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 1.6e-86 323.9 398 47.7
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 1.6e-86 323.9 402 46.3
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 2.8e-86 323.2 398 47.7
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 2.8e-86 323.2 229 68.1
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 3.6e-86 322.8 394 46.7
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 9.0e-85 318.2 411 45.7
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 1.5e-84 317.4 437 44.9
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 2.2e-83 313.5 421 45.8
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 2.9e-83 313.2 477 43.0
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 6.4e-83 312.0 394 45.2
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 8.4e-83 311.6 468 40.8
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 4.2e-82 309.3 417 41.7
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 1.2e-81 307.8 394 44.7
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 1.8e-80 303.9 428 43.9
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 1.3e-78 297.7 389 45.0
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 1.3e-78 297.7 336 50.0
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 1.6e-78 297.4 457 40.3
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 1.4e-77 294.3 421 42.8
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 5.3e-77 292.4 302 51.3
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 6.9e-77 292.0 376 46.0
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 1.5e-76 290.8 197 68.5
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 2.0e-76 290.4 433 42.0
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 2.6e-76 290.0 397 44.3
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 1.7e-75 287.3 411 42.8
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 2.2e-75 287.0 443 42.7
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 8.4e-75 285.0 390 45.1
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 1.9e-74 283.9 200 70.0
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 5.6e-71 272.3 380 42.1
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 5.6e-71 272.3 386 42.2
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 1.8e-69 267.3 361 41.6
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 1.8e-69 267.3 410 40.7
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 2.4e-69 266.9 387 40.3
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 1.2e-68 264.6 393 40.5
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 1.5e-68 264.2 486 36.0
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 2.6e-68 263.5 396 42.9
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 2.2e-67 260.4 378 42.3
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 6.5e-67 258.8 384 40.6
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 1.9e-66 257.3 393 41.2
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 3.2e-66 256.5 446 38.8
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 9.3e-66 255.0 355 45.6
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 2.1e-65 253.8 161 75.8
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 7.9e-65 251.9 397 39.0
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 4.3e-63 246.1 369 40.7
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 6.3e-62 242.3 437 37.3
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 8.2e-62 241.9 384 38.5
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 8.2e-62 241.9 394 37.8
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.1e-61 241.5 437 38.2
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 4.1e-61 239.6 201 58.7
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 1.4e-58 231.1 391 38.6
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 2.1e-57 227.3 377 38.7
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 2.7e-57 226.9 421 36.1
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 5.1e-56 222.6 172 66.9
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 5.1e-56 222.6 172 66.9
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 3.1e-53 213.4 404 37.9
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 4.8e-46 189.5 416 34.1
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 4.1e-45 186.4 109 78.0
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 7.0e-45 185.7 437 32.0
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 3.5e-44 183.3 379 35.9
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 1.3e-43 181.4 425 32.5
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 2.5e-42 177.2 169 53.3
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 3.2e-42 176.8 168 53.0
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 3.6e-41 173.3 430 32.8
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.3e-40 170.6 441 30.8
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 5.7e-39 166.0 169 52.7
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 1.7e-35 154.5 201 41.3
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.2e-35 154.1 384 32.8
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 4.2e-34 149.8 162 46.3
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 6.8e-32 142.5 151 48.3
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 4.4e-31 139.8 436 28.2
AUR62044709 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.9e-26 124.4 233 38.6
AUR62044714 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.9e-26 124.4 233 38.6
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 1.4e-24 118.2 350 30.6
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 8.6e-19 99.0 128 43.8
AT4G06534 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 4.2e-18 96.7 215 32.1
Glyma.15G095100 Glycine max HOM05D004702 ORTHO05D005505 3.0e-16 90.5 79 59.5
Sp6g10670 Schrenkiella parvula HOM05D004702 ORTHO05D005505 3.0e-16 90.5 210 31.0
SEGI_40713 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 5.6e-10 69.7 117 32.5


User provided reference genes

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