Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 2.1e-135 485.7 246 100.0
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 4.0e-78 295.4 249 66.3
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 4.4e-77 292.0 249 65.9
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 2.2e-76 289.7 249 63.9
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 1.8e-70 270.0 254 61.0
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 1.7e-60 236.9 234 56.8
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 1.7e-57 226.9 216 59.7
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 2.0e-50 203.4 186 60.8
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 4.7e-39 165.6 246 44.3
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 1.8e-38 163.7 256 43.4
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 4.0e-38 162.5 205 46.3
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 2.0e-37 160.2 232 42.7
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 1.1e-35 154.5 196 46.9
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 1.4e-35 154.1 235 41.7
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 3.5e-34 149.4 232 40.5
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 9.6e-32 141.4 255 38.0
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 1.6e-31 140.6 202 43.6
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 2.8e-31 139.8 202 46.0
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 8.1e-31 138.3 255 37.3
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 1.1e-30 137.9 225 40.4
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 4.0e-30 136.0 202 43.6
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 5.2e-30 135.6 257 38.9
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 8.9e-30 134.8 256 37.1
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 8.9e-30 134.8 130 58.5
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 1.2e-29 134.4 203 41.4
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 1.5e-29 134.0 155 51.6
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 7.6e-29 131.7 210 40.5
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 1.7e-28 130.6 260 37.7
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 2.9e-28 129.8 257 35.4
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 3.8e-28 129.4 209 41.6
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 6.4e-28 128.6 186 43.0
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 1.1e-27 127.9 243 35.8
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 2.4e-27 126.7 230 39.6
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 4.2e-27 125.9 164 47.6
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 7.1e-27 125.2 235 37.4
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 9.3e-27 124.8 215 39.5
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 1.6e-26 124.0 245 35.9
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 2.1e-26 123.6 250 36.4
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 1.0e-25 121.3 212 36.3
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 2.3e-25 120.2 209 39.7
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 3.0e-25 119.8 212 36.3
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 3.0e-25 119.8 212 36.3
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 3.9e-25 119.4 226 35.4
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 3.9e-25 119.4 211 37.0
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 6.6e-25 118.6 205 37.1
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 6.6e-25 118.6 247 33.6
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 8.7e-25 118.2 194 40.2
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 8.7e-25 118.2 216 38.0
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 8.7e-25 118.2 209 34.9
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 1.1e-24 117.9 211 36.0
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 1.5e-24 117.5 262 34.7
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 1.5e-24 117.5 205 39.0
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 1.5e-24 117.5 213 37.1
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 1.5e-24 117.5 224 37.1
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 1.9e-24 117.1 227 35.2
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 2.5e-24 116.7 205 38.5
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 4.3e-24 115.9 211 35.5
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 1.3e-23 114.4 222 36.0
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 1.3e-23 114.4 216 37.5
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 2.1e-23 113.6 215 35.8
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 2.1e-23 113.6 216 37.5
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 3.6e-23 112.8 207 37.2
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 3.6e-23 112.8 226 38.5
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 6.2e-23 112.1 209 36.4
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 6.2e-23 112.1 219 35.2
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 1.1e-22 111.3 206 36.4
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 1.4e-22 110.9 207 36.2
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 2.4e-22 110.2 254 32.7
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 3.1e-22 109.8 204 38.7
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 5.3e-22 109.0 204 35.8
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 6.9e-22 108.6 220 37.3
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.2e-21 107.8 249 34.1
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 1.2e-21 107.8 171 41.5
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 1.5e-21 107.5 207 34.8
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 2.6e-21 106.7 239 32.2
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.6e-21 106.7 212 35.8
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 3.4e-21 106.3 258 33.7
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 4.5e-21 105.9 239 32.2
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 7.6e-21 105.1 210 33.8
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 9.9e-21 104.8 248 34.7
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 9.9e-21 104.8 164 39.0
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 1.3e-20 104.4 212 35.4
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 4.9e-20 102.4 135 43.7
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 8.4e-20 101.7 271 35.4
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.4e-19 100.9 213 33.8
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.4e-19 100.9 213 33.8
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 3.2e-19 99.8 166 39.2
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 4.2e-19 99.4 211 34.1
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 5.4e-19 99.0 210 34.3
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 5.4e-19 99.0 210 33.8
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 5.4e-19 99.0 201 35.3
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 1.2e-18 97.8 208 32.7
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 1.2e-18 97.8 176 39.2
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 2.7e-18 96.7 205 33.7
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 2.7e-18 96.7 205 33.7
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 2.7e-18 96.7 208 34.6
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 2.7e-18 96.7 203 34.5
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 4.6e-18 95.9 208 35.6
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 6.0e-18 95.5 180 38.9
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 1.0e-17 94.7 203 33.5
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 1.8e-17 94.0 203 33.5
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 1.8e-17 94.0 104 49.0
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 2.3e-17 93.6 178 39.3
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 3.0e-17 93.2 198 33.3
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 6.7e-17 92.0 181 36.5
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 8.7e-17 91.7 253 33.2
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 1.1e-16 91.3 203 34.5
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 1.9e-16 90.5 216 32.4
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 4.3e-16 89.4 196 32.7
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 7.4e-16 88.6 117 45.3
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 1.3e-15 87.8 224 31.7
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 1.3e-15 87.8 224 31.7
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 1.8e-14 84.0 143 35.7
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 2.4e-14 83.6 224 30.8
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 5.3e-14 82.4 202 32.7
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 6.9e-14 82.0 208 31.7
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 9.0e-14 81.6 165 33.3
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 1.2e-13 81.3 216 30.1
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 2.6e-13 80.1 179 33.5
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 3.4e-13 79.7 256 28.5
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 1.7e-12 77.4 215 30.2
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 1.7e-12 77.4 262 27.9
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 2.2e-12 77.0 214 29.9
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 4.9e-12 75.9 129 36.4
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 6.4e-12 75.5 138 35.5
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 8.4e-12 75.1 182 35.2
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 4.6e-10 69.3 81 48.1
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 7.9e-10 68.6 82 47.6
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 1.3e-09 67.8 69 50.7
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.8e-09 67.4 212 28.8
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 3.0e-09 66.6 299 24.1
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 3.0e-09 66.6 90 44.4
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 4.3e-08 62.8 126 32.5
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 7.4e-08 62.0 314 23.6
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 1.6e-07 60.8 94 37.2
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 2.8e-07 60.1 126 34.9
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 6.2e-07 58.9 197 29.9
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 5.3e-06 55.8 93 37.6
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 9.0e-06 55.1 75 45.3


User provided reference genes

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